Wall clock time and date at job start Tue Mar 31 2020 04:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 114.00042 * 2 1 4 4 C 1.53005 * 109.47016 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.46972 * 54.99802 * 4 3 2 6 6 O 1.42905 * 109.47194 * 295.00076 * 4 3 2 7 7 C 1.42894 * 114.00082 * 149.99888 * 6 4 3 8 8 C 1.50693 * 109.47399 * 175.00261 * 4 3 2 9 9 O 1.21284 * 120.00590 * 114.99787 * 8 4 3 10 10 N 1.34776 * 119.99751 * 294.99975 * 8 4 3 11 11 C 1.46502 * 120.00136 * 179.97438 * 10 8 4 12 12 H 1.09001 * 112.84814 * 336.19787 * 11 10 8 13 13 C 1.53951 * 113.74299 * 107.40273 * 11 10 8 14 14 C 1.53781 * 87.02106 * 139.94718 * 13 11 10 15 15 H 1.08998 * 113.61542 * 89.23147 * 14 13 11 16 16 N 1.46903 * 113.61473 * 220.04847 * 14 13 11 17 17 C 1.46896 * 110.99955 * 254.13631 * 16 14 13 18 18 C 1.50700 * 109.46942 * 179.97438 * 17 16 14 19 19 O 1.21293 * 120.00282 * 359.97438 * 18 17 16 20 20 N 1.34777 * 120.00075 * 179.97438 * 18 17 16 21 21 C 1.37104 * 120.00173 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99666 * 359.97438 * 21 20 18 23 23 C 1.38945 * 120.00001 * 180.27893 * 21 20 18 24 24 N 1.31407 * 120.00135 * 179.72366 * 23 21 20 25 25 Si 1.86800 * 120.00194 * 359.72088 * 23 21 20 26 26 H 1.48500 * 109.47210 * 89.99937 * 25 23 21 27 27 H 1.48496 * 109.47530 * 210.00374 * 25 23 21 28 28 H 1.48501 * 109.47312 * 330.00618 * 25 23 21 29 29 C 1.53776 * 87.17065 * 334.63541 * 14 13 11 30 30 H 1.09001 * 109.47175 * 59.99313 * 1 2 3 31 31 H 1.08996 * 109.47395 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46666 * 299.99900 * 1 2 3 33 33 H 1.08998 * 109.47033 * 60.00654 * 3 2 1 34 34 H 1.08998 * 109.47311 * 300.00109 * 3 2 1 35 35 H 1.09002 * 109.47390 * 59.99843 * 7 6 4 36 36 H 1.09005 * 109.47402 * 180.02562 * 7 6 4 37 37 H 1.09006 * 109.47332 * 299.99664 * 7 6 4 38 38 H 0.96996 * 120.00252 * 0.02562 * 10 8 4 39 39 H 1.09004 * 113.61483 * 25.42627 * 13 11 10 40 40 H 1.09002 * 113.67099 * 254.47507 * 13 11 10 41 41 H 1.00907 * 111.00029 * 18.09143 * 16 14 13 42 42 H 1.08994 * 109.47346 * 60.00149 * 17 16 14 43 43 H 1.08998 * 109.47279 * 299.99821 * 17 16 14 44 44 H 0.97000 * 120.00140 * 0.02562 * 20 18 17 45 45 H 0.97004 * 120.00486 * 179.97438 * 24 23 21 46 46 H 1.09005 * 113.61131 * 139.93810 * 29 14 13 47 47 H 1.08994 * 113.62140 * 270.75678 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8508 0.5684 -0.8426 6 8 3.9659 0.5791 1.2201 7 6 5.1691 -0.1822 1.0988 8 6 4.1481 2.5558 -0.1244 9 8 4.8070 3.0102 0.7868 10 7 3.9636 3.2773 -1.2477 11 6 4.5586 4.6107 -1.3679 12 1 4.7567 5.0744 -0.4015 13 6 5.7545 4.6709 -2.3355 14 6 5.1982 6.0231 -2.8118 15 1 5.5707 6.8738 -2.2412 16 7 5.2987 6.2222 -4.2638 17 6 6.3664 7.1764 -4.5917 18 6 6.4396 7.3542 -6.0863 19 8 5.6776 6.7455 -6.8076 20 7 7.3517 8.1895 -6.6218 21 6 7.4179 8.3517 -7.9816 22 1 6.7394 7.8097 -8.6237 23 6 8.3621 9.2084 -8.5339 24 7 8.4292 9.3597 -9.8375 25 14 9.5362 10.1453 -7.4233 26 1 10.7622 9.3365 -7.2046 27 1 9.9012 11.4343 -8.0639 28 1 8.8785 10.4098 -6.1184 29 6 3.8161 5.5302 -2.3518 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8901 33 1 1.6887 1.8463 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 5.9767 0.4663 0.7592 36 1 5.4283 -0.6090 2.0677 37 1 5.0198 -0.9851 0.3767 38 1 3.4362 2.9142 -1.9763 39 1 5.7353 3.8963 -3.1022 40 1 6.7194 4.7478 -1.8343 41 1 5.4396 5.3440 -4.7403 42 1 7.3193 6.7956 -4.2244 43 1 6.1530 8.1362 -4.1213 44 1 7.9614 8.6760 -6.0451 45 1 9.0881 9.9581 -10.2231 46 1 3.2183 6.3000 -1.8637 47 1 3.2653 4.9924 -3.1233 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690355612.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:52 Heat of formation + Delta-G solvation = -128.246933 kcal Electronic energy + Delta-G solvation = -27566.273413 eV Core-core repulsion = 23364.717085 eV Total energy + Delta-G solvation = -4201.556328 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.74721 -39.40586 -38.41105 -38.06275 -37.28469 -34.77501 -33.97093 -32.89858 -31.67383 -31.07181 -27.34235 -27.09106 -26.48924 -25.90736 -24.72604 -23.90923 -22.57220 -20.88043 -20.22209 -19.35489 -18.35741 -18.01367 -17.61119 -16.98651 -16.51902 -16.17566 -15.94466 -15.79603 -15.53979 -15.14108 -14.99473 -14.83955 -14.62173 -14.45799 -13.90004 -13.66266 -13.41282 -13.17764 -12.95522 -12.89135 -12.68508 -12.42549 -12.26240 -12.12464 -11.83952 -11.82245 -11.55057 -11.38300 -11.21278 -11.09796 -10.97150 -10.90702 -10.61277 -10.23633 -9.99678 -9.68490 -9.59691 -9.37692 -8.61562 -8.21899 -8.14150 -6.33275 -3.84876 2.06943 2.57436 3.01247 3.05119 3.13713 3.23499 3.36075 3.71272 4.05594 4.09178 4.22724 4.34262 4.37991 4.45938 4.48443 4.65870 4.71828 4.74207 4.85865 4.90832 4.93786 4.96737 5.07983 5.12834 5.19911 5.22920 5.31808 5.37468 5.50818 5.52934 5.59998 5.68787 5.78348 5.82109 5.82700 5.93781 6.22482 6.51757 6.59245 7.05917 7.11374 7.51248 7.56097 7.79706 8.12035 8.57246 8.92542 9.40078 9.79910 10.79760 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.024367 B = 0.001780 C = 0.001725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.829645 B =15724.063446 C =16225.199899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.070 3.930 4 C 0.075 3.925 5 H 0.096 0.904 6 O -0.351 6.351 7 C 0.030 3.970 8 C 0.494 3.506 9 O -0.518 6.518 10 N -0.715 5.715 11 C 0.120 3.880 12 H 0.116 0.884 13 C -0.182 4.182 14 C 0.071 3.929 15 H 0.101 0.899 16 N -0.654 5.654 17 C 0.047 3.953 18 C 0.449 3.551 19 O -0.566 6.566 20 N -0.590 5.590 21 C -0.306 4.306 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.881 5.881 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.269 1.269 29 C -0.132 4.132 30 H 0.044 0.956 31 H 0.089 0.911 32 H 0.044 0.956 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.044 0.956 36 H 0.091 0.909 37 H 0.045 0.955 38 H 0.402 0.598 39 H 0.088 0.912 40 H 0.071 0.929 41 H 0.353 0.647 42 H 0.046 0.954 43 H 0.088 0.912 44 H 0.371 0.629 45 H 0.273 0.727 46 H 0.077 0.923 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.600 -15.922 22.622 29.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C -0.007 4.007 4 C 0.013 3.987 5 H 0.114 0.886 6 O -0.267 6.267 7 C -0.066 4.066 8 C 0.278 3.722 9 O -0.393 6.393 10 N -0.368 5.368 11 C 0.015 3.985 12 H 0.133 0.867 13 C -0.223 4.223 14 C -0.041 4.041 15 H 0.119 0.881 16 N -0.286 5.286 17 C -0.086 4.086 18 C 0.235 3.765 19 O -0.448 6.448 20 N -0.229 5.229 21 C -0.435 4.435 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.521 5.521 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.201 1.201 28 H -0.195 1.195 29 C -0.171 4.171 30 H 0.063 0.937 31 H 0.107 0.893 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.109 0.891 37 H 0.064 0.936 38 H 0.237 0.763 39 H 0.106 0.894 40 H 0.090 0.910 41 H 0.174 0.826 42 H 0.064 0.936 43 H 0.106 0.894 44 H 0.203 0.797 45 H 0.084 0.916 46 H 0.096 0.904 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.010 -15.582 22.755 29.696 hybrid contribution 1.636 0.368 0.244 1.694 sum -9.374 -15.215 23.000 29.126 Atomic orbital electron populations 1.22799 0.80311 1.03168 1.00298 1.87904 1.20171 1.26590 1.95475 1.22470 0.90274 0.86058 1.01897 1.22012 0.94107 0.92016 0.90583 0.88584 1.88018 1.42284 1.66995 1.29451 1.22882 0.86380 0.94350 1.03031 1.21146 0.81243 0.87290 0.82497 1.90734 1.39105 1.70603 1.38850 1.46092 1.54310 1.17973 1.18412 1.22486 0.94404 0.82330 0.99241 0.86655 1.24288 0.98863 0.99379 0.99775 1.22816 0.96036 0.95845 0.89360 0.88133 1.60001 1.47097 1.16231 1.05247 1.21756 0.93305 0.97714 0.95820 1.19726 0.83889 0.84021 0.88912 1.90561 1.42914 1.49475 1.61868 1.42213 1.32249 1.40462 1.08008 1.19432 1.18295 1.25342 0.80381 0.86285 1.25042 0.97724 0.97562 0.95832 1.69619 1.35486 1.37312 1.09653 0.86668 0.81680 0.80541 0.80478 1.19663 1.20141 1.19457 1.23463 0.97497 0.98506 0.97660 0.93736 0.89258 0.93766 0.91564 0.91209 0.93683 0.89068 0.93647 0.76311 0.89357 0.90996 0.82649 0.93611 0.89389 0.79674 0.91593 0.90449 0.88882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.38 -3.13 10.67 -40.08 -0.43 -3.56 16 3 C 0.07 0.50 5.57 37.16 0.21 0.71 16 4 C 0.08 0.63 2.80 -27.88 -0.08 0.55 16 5 H 0.10 0.63 7.79 -51.93 -0.40 0.23 16 6 O -0.35 -3.76 9.85 -59.70 -0.59 -4.34 16 7 C 0.03 0.24 10.81 101.05 1.09 1.33 16 8 C 0.49 4.90 7.13 -10.99 -0.08 4.82 16 9 O -0.52 -7.30 16.11 -14.31 -0.23 -7.53 16 10 N -0.71 -5.45 5.26 -52.93 -0.28 -5.73 16 11 C 0.12 1.05 4.24 -67.03 -0.28 0.76 16 12 H 0.12 1.14 7.46 -51.93 -0.39 0.75 16 13 C -0.18 -1.71 7.52 -25.83 -0.19 -1.90 16 14 C 0.07 0.74 4.16 -66.90 -0.28 0.46 16 15 H 0.10 0.98 7.88 -51.93 -0.41 0.57 16 16 N -0.65 -9.34 6.24 -107.14 -0.67 -10.01 16 17 C 0.05 0.74 6.02 -4.98 -0.03 0.71 16 18 C 0.45 9.98 7.82 -10.98 -0.09 9.89 16 19 O -0.57 -14.92 15.78 5.55 0.09 -14.84 16 20 N -0.59 -13.87 5.09 -10.96 -0.06 -13.93 16 21 C -0.31 -8.59 10.16 -14.93 -0.15 -8.74 16 22 H 0.12 3.82 7.39 -52.49 -0.39 3.44 16 23 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 24 N -0.88 -25.58 13.96 55.50 0.77 -24.81 16 25 Si 0.88 19.21 27.73 -169.99 -4.71 14.50 16 26 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 27 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 28 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 29 C -0.13 -1.14 7.63 -25.92 -0.20 -1.34 16 30 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.32 7.77 -51.93 -0.40 -0.08 16 35 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.04 0.29 8.09 -51.93 -0.42 -0.13 16 38 H 0.40 2.07 8.43 -40.82 -0.34 1.72 16 39 H 0.09 0.82 7.83 -51.93 -0.41 0.42 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.35 5.22 7.91 -39.29 -0.31 4.90 16 42 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.09 1.25 8.13 -51.93 -0.42 0.83 16 44 H 0.37 7.63 5.77 -40.82 -0.24 7.40 16 45 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 46 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.09 0.80 8.12 -51.93 -0.42 0.38 16 LS Contribution 395.93 15.07 5.97 5.97 Total: -1.00 -36.22 395.93 -6.72 -42.95 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: -7.52 Total: 11.78 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: 0.94 Total: 9.55 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: -0.23 Total: -54.47 kcal Atomic # 8 Polarization: -29.11 SS G_CDS: -1.16 Total: -30.27 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.71 Total: 14.50 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.22 -6.72 -42.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690355612.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.300 kcal (2) G-P(sol) polarization free energy of solvation -36.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds