Wall clock time and date at job start Tue Mar 31 2020 04:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42897 * 113.99982 * 2 1 4 4 C 1.52999 * 109.47074 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47708 * 305.00466 * 4 3 2 6 6 O 1.42901 * 109.47161 * 65.00038 * 4 3 2 7 7 C 1.42900 * 114.00155 * 270.00192 * 6 4 3 8 8 C 1.50697 * 109.47608 * 184.99839 * 4 3 2 9 9 O 1.21283 * 120.00521 * 244.72998 * 8 4 3 10 10 N 1.34784 * 119.99774 * 65.00104 * 8 4 3 11 11 C 1.46499 * 119.99893 * 179.72962 * 10 8 4 12 12 H 1.08994 * 112.85555 * 23.80061 * 11 10 8 13 13 C 1.53777 * 113.61200 * 155.00334 * 11 10 8 14 14 C 1.53781 * 87.08274 * 139.97613 * 13 11 10 15 15 H 1.09007 * 113.61465 * 89.11410 * 14 13 11 16 16 N 1.46896 * 113.61583 * 219.92791 * 14 13 11 17 17 C 1.46899 * 111.00538 * 204.99787 * 16 14 13 18 18 C 1.50691 * 109.47527 * 180.02562 * 17 16 14 19 19 O 1.21293 * 119.99907 * 359.97438 * 18 17 16 20 20 N 1.34777 * 120.00086 * 180.02562 * 18 17 16 21 21 C 1.37094 * 119.99975 * 179.97438 * 20 18 17 22 22 H 1.07993 * 120.00328 * 0.02562 * 21 20 18 23 23 C 1.38955 * 120.00114 * 180.02562 * 21 20 18 24 24 N 1.31412 * 119.99524 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00177 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47541 * 89.99766 * 25 23 21 27 27 H 1.48497 * 109.47165 * 209.99704 * 25 23 21 28 28 H 1.48494 * 109.47288 * 329.99735 * 25 23 21 29 29 C 1.53775 * 87.07928 * 334.56404 * 14 13 11 30 30 H 1.08995 * 109.46858 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46987 * 300.00085 * 1 2 3 32 32 H 1.08998 * 109.46444 * 59.99738 * 1 2 3 33 33 H 1.09005 * 109.47497 * 60.00003 * 3 2 1 34 34 H 1.08996 * 109.47505 * 299.99744 * 3 2 1 35 35 H 1.09002 * 109.47176 * 59.99659 * 7 6 4 36 36 H 1.08997 * 109.47307 * 179.97438 * 7 6 4 37 37 H 1.08995 * 109.46898 * 299.99833 * 7 6 4 38 38 H 0.97005 * 119.99846 * 359.72750 * 10 8 4 39 39 H 1.09003 * 113.61102 * 254.52380 * 13 11 10 40 40 H 1.08994 * 113.61778 * 25.42685 * 13 11 10 41 41 H 1.00907 * 110.99580 * 81.04656 * 16 14 13 42 42 H 1.09000 * 109.46765 * 300.01004 * 17 16 14 43 43 H 1.09005 * 109.46658 * 60.00119 * 17 16 14 44 44 H 0.97000 * 119.99795 * 0.02562 * 20 18 17 45 45 H 0.97005 * 119.99446 * 180.02562 * 24 23 21 46 46 H 1.08997 * 113.61959 * 270.88049 * 29 14 13 47 47 H 1.09002 * 113.61358 * 139.97938 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8509 0.5684 0.8426 6 8 3.9659 0.5792 -1.2201 7 6 4.0473 -0.8464 -1.1648 8 6 4.1481 2.5559 0.1244 9 8 4.8112 3.0083 -0.7848 10 7 3.9636 3.2774 1.2478 11 6 4.5640 4.6081 1.3706 12 1 4.7669 5.0717 0.4052 13 6 3.8229 5.5300 2.3531 14 6 5.2059 6.0149 2.8189 15 1 5.5855 6.8637 2.2499 16 7 5.3015 6.2133 4.2713 17 6 6.3491 7.1887 4.6017 18 6 6.4178 7.3651 6.0966 19 8 5.6675 6.7402 6.8162 20 7 7.3123 8.2181 6.6341 21 6 7.3744 8.3790 7.9942 22 1 6.7070 7.8220 8.6349 23 6 8.2962 9.2588 8.5483 24 7 9.1087 9.9362 7.7686 25 14 8.3814 9.4775 10.4014 26 1 9.3440 8.5009 10.9715 27 1 8.8309 10.8573 10.7169 28 1 7.0372 9.2484 10.9893 29 6 5.7543 4.6594 2.3430 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3632 0.5139 -0.8900 33 1 1.6887 1.8464 0.8900 34 1 1.6887 1.8464 -0.8900 35 1 3.0653 -1.2576 -0.9306 36 1 4.3803 -1.2291 -2.1296 37 1 4.7578 -1.1400 -0.3922 38 1 3.4332 2.9157 1.9750 39 1 3.2309 6.3036 1.8640 40 1 3.2670 4.9927 3.1214 41 1 5.4604 5.3373 4.7462 42 1 7.3099 6.8284 4.2340 43 1 6.1161 8.1448 4.1329 44 1 7.9115 8.7187 6.0586 45 1 9.7525 10.5501 8.1555 46 1 5.7266 3.8840 3.1085 47 1 6.7217 4.7301 1.8456 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690355613.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:00 Heat of formation + Delta-G solvation = -134.657378 kcal Electronic energy + Delta-G solvation = -27477.536883 eV Core-core repulsion = 23275.702578 eV Total energy + Delta-G solvation = -4201.834306 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -40.66787 -39.36944 -38.38577 -37.94200 -37.24094 -34.69497 -33.90630 -32.79924 -31.23284 -30.93327 -27.54439 -26.92057 -26.33220 -25.83130 -24.72776 -23.98702 -22.55078 -20.83832 -20.15137 -19.17419 -17.97991 -17.86208 -17.58325 -17.01361 -16.49338 -16.24455 -15.91219 -15.79048 -15.42942 -15.05125 -14.86606 -14.54492 -14.49592 -14.41758 -14.07434 -13.53139 -13.36488 -13.24770 -13.03318 -12.89055 -12.61198 -12.35676 -12.13467 -11.95838 -11.67821 -11.62699 -11.56902 -11.28187 -11.08063 -11.02139 -10.87485 -10.40342 -10.36175 -10.24557 -10.22364 -9.83201 -9.52210 -9.32380 -8.46945 -8.05045 -7.96673 -6.42779 -3.83665 2.13508 2.45979 3.16933 3.19164 3.25762 3.31632 3.61109 3.89539 4.09361 4.24946 4.28599 4.35858 4.44723 4.50718 4.55715 4.70476 4.75207 4.83370 4.84783 4.88544 4.99069 5.14033 5.16693 5.17865 5.22704 5.26086 5.39704 5.47292 5.57988 5.62061 5.75709 5.78734 5.87564 5.90521 5.99759 6.23114 6.31293 6.49372 6.62423 7.13395 7.22577 7.54132 7.62263 7.85438 8.05108 8.59965 9.16658 9.53159 10.04398 10.74881 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.026472 B = 0.001673 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.469872 B =16727.534008 C =17093.219248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.388 6.388 3 C 0.045 3.955 4 C 0.075 3.925 5 H 0.096 0.904 6 O -0.356 6.356 7 C 0.028 3.972 8 C 0.518 3.482 9 O -0.512 6.512 10 N -0.715 5.715 11 C 0.122 3.878 12 H 0.117 0.883 13 C -0.132 4.132 14 C 0.071 3.929 15 H 0.100 0.900 16 N -0.655 5.655 17 C 0.049 3.951 18 C 0.440 3.560 19 O -0.585 6.585 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.931 3.069 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 C -0.182 4.182 30 H 0.088 0.912 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.087 0.913 37 H 0.041 0.959 38 H 0.402 0.598 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.351 0.649 42 H 0.045 0.955 43 H 0.087 0.913 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.088 0.912 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.219 -17.616 -17.666 28.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.307 6.307 3 C -0.033 4.033 4 C 0.013 3.987 5 H 0.113 0.887 6 O -0.273 6.273 7 C -0.068 4.068 8 C 0.302 3.698 9 O -0.386 6.386 10 N -0.368 5.368 11 C 0.017 3.983 12 H 0.135 0.865 13 C -0.171 4.171 14 C -0.041 4.041 15 H 0.119 0.881 16 N -0.286 5.286 17 C -0.083 4.083 18 C 0.225 3.775 19 O -0.469 6.469 20 N -0.200 5.200 21 C -0.430 4.430 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.542 5.542 25 Si 0.758 3.242 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 C -0.222 4.222 30 H 0.107 0.893 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.106 0.894 37 H 0.059 0.941 38 H 0.237 0.763 39 H 0.095 0.905 40 H 0.110 0.890 41 H 0.172 0.828 42 H 0.063 0.937 43 H 0.105 0.895 44 H 0.226 0.774 45 H 0.081 0.919 46 H 0.106 0.894 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.428 -17.152 -17.935 28.216 hybrid contribution 0.801 -0.196 1.000 1.296 sum -12.627 -17.348 -16.935 27.335 Atomic orbital electron populations 1.22797 0.80328 1.03079 1.00374 1.87846 1.20344 1.26959 1.95509 1.23034 0.92416 0.85915 1.01920 1.21929 0.92531 0.93647 0.90559 0.88672 1.88015 1.87738 1.20355 1.31190 1.22966 1.01251 0.80108 1.02488 1.20116 0.81045 0.85993 0.82617 1.90745 1.38473 1.70379 1.38960 1.45980 1.54304 1.18221 1.18250 1.22473 0.94415 0.82086 0.99303 0.86542 1.23478 0.97615 0.98459 0.97588 1.22810 0.95900 0.95836 0.89525 0.88150 1.60015 1.48278 1.15193 1.05079 1.21727 0.93290 0.97241 0.96080 1.19826 0.84302 0.84449 0.88898 1.90517 1.44167 1.50185 1.62081 1.41868 1.32378 1.37730 1.07990 1.19703 1.18175 1.22920 0.82178 0.87924 1.25271 0.95937 0.96268 1.00483 1.69615 1.21559 1.27307 1.35755 0.85849 0.78753 0.77416 0.82217 1.20438 1.20911 1.19415 1.24250 0.98944 0.99354 0.99679 0.89320 0.93692 0.93777 0.91706 0.91565 0.92180 0.89443 0.94068 0.76331 0.90482 0.88959 0.82825 0.93708 0.89511 0.77435 0.91860 0.89375 0.90915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.39 -2.85 8.83 -40.09 -0.35 -3.21 16 3 C 0.04 0.31 5.57 37.16 0.21 0.52 16 4 C 0.08 0.66 2.91 -27.89 -0.08 0.57 16 5 H 0.10 0.65 7.79 -51.93 -0.40 0.25 16 6 O -0.36 -3.92 9.88 -59.70 -0.59 -4.51 16 7 C 0.03 0.22 10.71 101.05 1.08 1.30 16 8 C 0.52 5.49 7.18 -10.98 -0.08 5.42 16 9 O -0.51 -7.72 16.11 -14.31 -0.23 -7.96 16 10 N -0.71 -5.82 5.26 -53.02 -0.28 -6.10 16 11 C 0.12 1.13 4.24 -67.12 -0.28 0.85 16 12 H 0.12 1.22 7.46 -51.93 -0.39 0.83 16 13 C -0.13 -1.22 7.63 -25.92 -0.20 -1.42 16 14 C 0.07 0.80 4.18 -66.91 -0.28 0.52 16 15 H 0.10 1.07 7.87 -51.92 -0.41 0.66 16 16 N -0.65 -9.93 6.24 -107.14 -0.67 -10.60 16 17 C 0.05 0.84 6.01 -4.98 -0.03 0.81 16 18 C 0.44 10.25 7.82 -10.99 -0.09 10.17 16 19 O -0.59 -15.69 15.78 5.55 0.09 -15.60 16 20 N -0.56 -14.19 5.29 -10.97 -0.06 -14.24 16 21 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 22 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.44 13.05 55.50 0.72 -23.71 16 25 Si 0.93 20.96 29.55 -169.99 -5.02 15.94 16 26 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 28 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 29 C -0.18 -1.84 7.50 -25.92 -0.19 -2.03 16 30 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.06 0.32 7.76 -51.93 -0.40 -0.08 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.43 6.40 -51.93 -0.33 0.10 16 36 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.04 0.27 8.08 -51.93 -0.42 -0.15 16 38 H 0.40 2.23 8.42 -40.82 -0.34 1.89 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.09 0.84 8.12 -51.93 -0.42 0.42 16 41 H 0.35 5.49 7.90 -39.29 -0.31 5.18 16 42 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.09 1.37 8.13 -51.93 -0.42 0.95 16 44 H 0.39 9.45 7.90 -40.82 -0.32 9.12 16 45 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 46 H 0.09 0.88 7.83 -51.93 -0.41 0.48 16 47 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 395.50 15.07 5.96 5.96 Total: -1.00 -34.98 395.50 -6.98 -41.96 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: -7.47 Total: 12.11 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: 0.93 Total: 9.96 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: -0.28 Total: -54.65 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -1.09 Total: -31.27 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.98 -6.98 -41.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690355613.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.698 kcal (2) G-P(sol) polarization free energy of solvation -34.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds