Wall clock time and date at job start Tue Mar 31 2020 04:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42897 * 113.99982 * 2 1 4 4 C 1.52999 * 109.47074 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47708 * 305.00466 * 4 3 2 6 6 O 1.42901 * 109.47161 * 65.00038 * 4 3 2 7 7 C 1.42900 * 114.00155 * 270.00192 * 6 4 3 8 8 C 1.50697 * 109.47608 * 184.99839 * 4 3 2 9 9 O 1.21283 * 120.00521 * 244.72998 * 8 4 3 10 10 N 1.34784 * 119.99774 * 65.00104 * 8 4 3 11 11 C 1.46499 * 119.99893 * 179.72962 * 10 8 4 12 12 H 1.08994 * 112.85555 * 23.80061 * 11 10 8 13 13 C 1.53777 * 113.61200 * 155.00334 * 11 10 8 14 14 C 1.53781 * 87.08274 * 139.97613 * 13 11 10 15 15 H 1.09007 * 113.61465 * 89.11410 * 14 13 11 16 16 N 1.46896 * 113.61583 * 219.92791 * 14 13 11 17 17 C 1.46899 * 111.00538 * 204.99787 * 16 14 13 18 18 C 1.50691 * 109.47527 * 180.02562 * 17 16 14 19 19 O 1.21293 * 119.99907 * 359.97438 * 18 17 16 20 20 N 1.34777 * 120.00086 * 180.02562 * 18 17 16 21 21 C 1.37094 * 119.99975 * 179.97438 * 20 18 17 22 22 H 1.07993 * 120.00328 * 0.02562 * 21 20 18 23 23 C 1.38955 * 120.00114 * 180.02562 * 21 20 18 24 24 N 1.31412 * 119.99524 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00177 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47541 * 89.99766 * 25 23 21 27 27 H 1.48497 * 109.47165 * 209.99704 * 25 23 21 28 28 H 1.48494 * 109.47288 * 329.99735 * 25 23 21 29 29 C 1.53775 * 87.07928 * 334.56404 * 14 13 11 30 30 H 1.08995 * 109.46858 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46987 * 300.00085 * 1 2 3 32 32 H 1.08998 * 109.46444 * 59.99738 * 1 2 3 33 33 H 1.09005 * 109.47497 * 60.00003 * 3 2 1 34 34 H 1.08996 * 109.47505 * 299.99744 * 3 2 1 35 35 H 1.09002 * 109.47176 * 59.99659 * 7 6 4 36 36 H 1.08997 * 109.47307 * 179.97438 * 7 6 4 37 37 H 1.08995 * 109.46898 * 299.99833 * 7 6 4 38 38 H 0.97005 * 119.99846 * 359.72750 * 10 8 4 39 39 H 1.09003 * 113.61102 * 254.52380 * 13 11 10 40 40 H 1.08994 * 113.61778 * 25.42685 * 13 11 10 41 41 H 1.00907 * 110.99580 * 81.04656 * 16 14 13 42 42 H 1.09000 * 109.46765 * 300.01004 * 17 16 14 43 43 H 1.09005 * 109.46658 * 60.00119 * 17 16 14 44 44 H 0.97000 * 119.99795 * 0.02562 * 20 18 17 45 45 H 0.97005 * 119.99446 * 180.02562 * 24 23 21 46 46 H 1.08997 * 113.61959 * 270.88049 * 29 14 13 47 47 H 1.09002 * 113.61358 * 139.97938 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8509 0.5684 0.8426 6 8 3.9659 0.5792 -1.2201 7 6 4.0473 -0.8464 -1.1648 8 6 4.1481 2.5559 0.1244 9 8 4.8112 3.0083 -0.7848 10 7 3.9636 3.2774 1.2478 11 6 4.5640 4.6081 1.3706 12 1 4.7669 5.0717 0.4052 13 6 3.8229 5.5300 2.3531 14 6 5.2059 6.0149 2.8189 15 1 5.5855 6.8637 2.2499 16 7 5.3015 6.2133 4.2713 17 6 6.3491 7.1887 4.6017 18 6 6.4178 7.3651 6.0966 19 8 5.6675 6.7402 6.8162 20 7 7.3123 8.2181 6.6341 21 6 7.3744 8.3790 7.9942 22 1 6.7070 7.8220 8.6349 23 6 8.2962 9.2588 8.5483 24 7 9.1087 9.9362 7.7686 25 14 8.3814 9.4775 10.4014 26 1 9.3440 8.5009 10.9715 27 1 8.8309 10.8573 10.7169 28 1 7.0372 9.2484 10.9893 29 6 5.7543 4.6594 2.3430 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3632 0.5139 -0.8900 33 1 1.6887 1.8464 0.8900 34 1 1.6887 1.8464 -0.8900 35 1 3.0653 -1.2576 -0.9306 36 1 4.3803 -1.2291 -2.1296 37 1 4.7578 -1.1400 -0.3922 38 1 3.4332 2.9157 1.9750 39 1 3.2309 6.3036 1.8640 40 1 3.2670 4.9927 3.1214 41 1 5.4604 5.3373 4.7462 42 1 7.3099 6.8284 4.2340 43 1 6.1161 8.1448 4.1329 44 1 7.9115 8.7187 6.0586 45 1 9.7525 10.5501 8.1555 46 1 5.7266 3.8840 3.1085 47 1 6.7217 4.7301 1.8456 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690355613.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:57 Heat of formation + Delta-G solvation = -163.152863 kcal Electronic energy + Delta-G solvation = -27478.772540 eV Core-core repulsion = 23275.702578 eV Total energy + Delta-G solvation = -4203.069963 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.47540 -40.36014 -39.76943 -38.90918 -37.90303 -36.12492 -35.49011 -33.88680 -33.21210 -31.61845 -28.45953 -27.97915 -26.96352 -26.62843 -26.12620 -25.01325 -23.44845 -21.65183 -21.27849 -20.71501 -19.88256 -18.64329 -18.28745 -17.81300 -17.59424 -16.97905 -16.91201 -16.79888 -16.35387 -16.34439 -16.02058 -15.82157 -15.67850 -15.48690 -14.97480 -14.83133 -14.53512 -14.31540 -14.05483 -13.57735 -13.51006 -13.41570 -13.39116 -13.13538 -12.86904 -12.80931 -12.46518 -12.41701 -12.21606 -12.13019 -12.11850 -11.93147 -11.77666 -11.49872 -11.08240 -10.80762 -10.52433 -10.32407 -10.12437 -10.00997 -9.23367 -8.46188 -5.94950 1.35077 1.38553 1.42469 1.55222 1.74457 2.06078 2.29797 2.66229 2.90605 3.06947 3.21263 3.44850 3.61579 3.65051 3.73479 3.83115 3.91931 3.93841 4.02195 4.26175 4.34134 4.40414 4.48638 4.50992 4.55166 4.55491 4.60506 4.64984 4.67598 4.79962 4.81854 4.86486 4.93847 4.99823 5.07016 5.11344 5.41458 5.50049 5.93102 5.98304 6.06187 6.15106 6.42301 6.46836 6.60609 7.10513 7.13053 7.57084 8.12009 8.71106 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.026472 B = 0.001673 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.469872 B =16727.534008 C =17093.219248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.403 6.403 3 C 0.049 3.951 4 C 0.075 3.925 5 H 0.115 0.885 6 O -0.388 6.388 7 C 0.027 3.973 8 C 0.519 3.481 9 O -0.563 6.563 10 N -0.698 5.698 11 C 0.128 3.872 12 H 0.106 0.894 13 C -0.119 4.119 14 C 0.066 3.934 15 H 0.109 0.891 16 N -0.665 5.665 17 C 0.063 3.937 18 C 0.437 3.563 19 O -0.623 6.623 20 N -0.574 5.574 21 C -0.334 4.334 22 H 0.080 0.920 23 C -0.014 4.014 24 N -0.920 5.920 25 Si 0.994 3.006 26 H -0.271 1.271 27 H -0.271 1.271 28 H -0.273 1.273 29 C -0.176 4.176 30 H 0.100 0.900 31 H 0.056 0.944 32 H 0.045 0.955 33 H 0.089 0.911 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.094 0.906 37 H 0.050 0.950 38 H 0.417 0.583 39 H 0.086 0.914 40 H 0.098 0.902 41 H 0.347 0.653 42 H 0.065 0.935 43 H 0.105 0.895 44 H 0.396 0.604 45 H 0.277 0.723 46 H 0.091 0.909 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.924 -18.054 -17.502 28.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.322 6.322 3 C -0.028 4.028 4 C 0.014 3.986 5 H 0.133 0.867 6 O -0.307 6.307 7 C -0.069 4.069 8 C 0.305 3.695 9 O -0.441 6.441 10 N -0.352 5.352 11 C 0.023 3.977 12 H 0.124 0.876 13 C -0.158 4.158 14 C -0.045 4.045 15 H 0.127 0.873 16 N -0.297 5.297 17 C -0.069 4.069 18 C 0.225 3.775 19 O -0.510 6.510 20 N -0.211 5.211 21 C -0.464 4.464 22 H 0.098 0.902 23 C -0.213 4.213 24 N -0.561 5.561 25 Si 0.817 3.183 26 H -0.197 1.197 27 H -0.196 1.196 28 H -0.197 1.197 29 C -0.217 4.217 30 H 0.118 0.882 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.107 0.893 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.113 0.887 37 H 0.069 0.931 38 H 0.255 0.745 39 H 0.105 0.895 40 H 0.116 0.884 41 H 0.167 0.833 42 H 0.083 0.917 43 H 0.123 0.877 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.109 0.891 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.154 -17.597 -17.771 28.737 hybrid contribution 0.976 -0.111 0.914 1.342 sum -13.178 -17.708 -16.857 27.774 Atomic orbital electron populations 1.22966 0.79023 1.04105 1.01008 1.87813 1.21753 1.26996 1.95637 1.22970 0.91196 0.86098 1.02553 1.22009 0.93538 0.92490 0.90572 0.86716 1.87970 1.88133 1.21983 1.32587 1.23076 1.01779 0.78711 1.03342 1.20502 0.80204 0.86597 0.82239 1.90722 1.40913 1.71643 1.40791 1.45843 1.53625 1.17595 1.18089 1.22296 0.94209 0.82542 0.98675 0.87558 1.23394 0.96659 0.98453 0.97325 1.22955 0.97628 0.96736 0.87196 0.87309 1.60050 1.47512 1.14651 1.07436 1.21594 0.95166 0.98976 0.91166 1.20917 0.82540 0.82597 0.91473 1.90484 1.45311 1.51247 1.63950 1.41949 1.33209 1.38585 1.07354 1.19676 1.19073 1.24181 0.83465 0.90243 1.26051 0.95101 0.95423 1.04772 1.69677 1.21686 1.27374 1.37384 0.84918 0.78543 0.77905 0.76914 1.19652 1.19614 1.19740 1.24195 0.98989 0.98776 0.99723 0.88193 0.92551 0.93639 0.89303 0.92658 0.91795 0.88735 0.93136 0.74502 0.89532 0.88403 0.83335 0.91700 0.87722 0.76991 0.91329 0.89091 0.91422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 11.01 113.37 1.25 1.44 16 2 O -0.40 -5.27 8.83 -144.34 -1.27 -6.55 16 3 C 0.05 0.62 5.57 71.98 0.40 1.02 16 4 C 0.08 1.23 2.91 29.85 0.09 1.31 16 5 H 0.12 1.36 7.79 -2.39 -0.02 1.34 16 6 O -0.39 -8.42 9.88 -125.58 -1.24 -9.66 16 7 C 0.03 0.39 10.71 113.37 1.21 1.60 16 8 C 0.52 10.58 7.18 87.65 0.63 11.21 16 9 O -0.56 -17.12 16.11 15.96 0.26 -16.87 16 10 N -0.70 -10.17 5.26 -440.04 -2.31 -12.48 16 11 C 0.13 2.17 4.24 45.52 0.19 2.37 16 12 H 0.11 2.12 7.46 -2.39 -0.02 2.10 16 13 C -0.12 -1.94 7.63 31.12 0.24 -1.70 16 14 C 0.07 1.34 4.18 45.44 0.19 1.53 16 15 H 0.11 2.07 7.87 -2.38 -0.02 2.06 16 16 N -0.67 -19.19 6.24 -492.88 -3.08 -22.27 16 17 C 0.06 2.08 6.01 85.55 0.51 2.59 16 18 C 0.44 20.41 7.82 87.65 0.69 21.10 16 19 O -0.62 -33.86 15.78 -3.07 -0.05 -33.91 16 20 N -0.57 -29.20 5.29 -307.00 -1.62 -30.82 16 21 C -0.33 -18.90 9.68 84.04 0.81 -18.08 16 22 H 0.08 4.78 7.16 -2.91 -0.02 4.75 16 23 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 24 N -0.92 -49.51 13.05 21.66 0.28 -49.23 16 25 Si 0.99 42.69 29.55 68.60 2.03 44.71 16 26 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 27 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 28 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 29 C -0.18 -3.29 7.50 31.12 0.23 -3.06 16 30 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.04 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.09 0.65 7.76 -2.38 -0.02 0.63 16 34 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.06 0.86 6.40 -2.39 -0.02 0.84 16 36 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.05 0.61 8.08 -2.39 -0.02 0.59 16 38 H 0.42 3.57 8.42 -92.70 -0.78 2.79 16 39 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.10 1.52 8.12 -2.39 -0.02 1.51 16 41 H 0.35 10.47 7.90 -89.69 -0.71 9.77 16 42 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.10 3.10 8.13 -2.38 -0.02 3.08 16 44 H 0.40 19.17 7.90 -92.71 -0.73 18.43 16 45 H 0.28 13.97 8.31 -92.70 -0.77 13.20 16 46 H 0.09 1.67 7.83 -2.39 -0.02 1.65 16 47 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -76.38 395.50 -1.31 -77.69 By element: Atomic # 1 Polarization: 39.52 SS G_CDS: -1.21 Total: 38.30 kcal Atomic # 6 Polarization: 14.16 SS G_CDS: 6.91 Total: 21.07 kcal Atomic # 7 Polarization: -108.06 SS G_CDS: -6.73 Total: -114.80 kcal Atomic # 8 Polarization: -64.68 SS G_CDS: -2.31 Total: -66.99 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.71 kcal Total: -76.38 -1.31 -77.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690355613.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.460 kcal (2) G-P(sol) polarization free energy of solvation -76.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds