Wall clock time and date at job start Tue Mar 31 2020 05:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.46983 * 2 1 4 4 C 1.53002 * 109.47146 * 119.99936 * 2 1 3 5 5 H 1.08999 * 109.46982 * 54.67093 * 4 2 1 6 6 F 1.39903 * 109.46920 * 294.67280 * 4 2 1 7 7 C 1.50695 * 109.47187 * 174.67223 * 4 2 1 8 8 O 1.21286 * 119.99584 * 99.27047 * 7 4 2 9 9 N 1.34774 * 120.00222 * 279.27262 * 7 4 2 10 10 C 1.46497 * 119.99722 * 355.35420 * 9 7 4 11 11 C 1.46502 * 120.00067 * 175.35243 * 9 7 4 12 12 C 1.52999 * 109.47174 * 89.99889 * 11 9 7 13 13 H 1.08998 * 112.74741 * 284.23062 * 12 11 9 14 14 C 1.53507 * 113.47657 * 153.37743 * 12 11 9 15 15 C 1.53514 * 83.57611 * 219.21012 * 14 12 11 16 16 N 1.47478 * 113.47377 * 54.99742 * 12 11 9 17 17 C 1.46900 * 111.00444 * 253.47156 * 16 12 11 18 18 C 1.50697 * 109.47406 * 170.00417 * 17 16 12 19 19 O 1.21287 * 120.00168 * 359.97438 * 18 17 16 20 20 N 1.34772 * 119.99877 * 179.97438 * 18 17 16 21 21 C 1.37103 * 120.00057 * 179.97438 * 20 18 17 22 22 H 1.07994 * 120.00167 * 0.02562 * 21 20 18 23 23 C 1.38954 * 120.00149 * 180.02562 * 21 20 18 24 24 N 1.31410 * 119.99940 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99909 * 180.27679 * 23 21 20 26 26 H 1.48500 * 109.46786 * 179.72293 * 25 23 21 27 27 H 1.48500 * 109.47080 * 299.72468 * 25 23 21 28 28 H 1.48501 * 109.47207 * 59.72521 * 25 23 21 29 29 H 1.09000 * 109.46896 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47223 * 300.00111 * 1 2 3 31 31 H 1.08994 * 109.47238 * 60.00256 * 1 2 3 32 32 H 1.08996 * 109.47223 * 239.99889 * 2 1 3 33 33 H 1.09001 * 109.47144 * 185.02213 * 3 2 1 34 34 H 1.09010 * 109.47218 * 305.01694 * 3 2 1 35 35 H 1.09003 * 109.47807 * 65.01835 * 3 2 1 36 36 H 1.09004 * 109.47020 * 275.21358 * 10 9 7 37 37 H 1.08999 * 109.47785 * 35.21469 * 10 9 7 38 38 H 1.09002 * 109.47204 * 155.22077 * 10 9 7 39 39 H 1.08996 * 109.47166 * 330.00007 * 11 9 7 40 40 H 1.08997 * 109.46995 * 210.00238 * 11 9 7 41 41 H 1.08994 * 114.17025 * 332.86215 * 14 12 11 42 42 H 1.09009 * 114.16902 * 105.37406 * 14 12 11 43 43 H 1.09004 * 113.47720 * 271.25685 * 15 14 12 44 44 H 1.09000 * 113.47547 * 140.79457 * 15 14 12 45 45 H 1.08999 * 109.47159 * 49.99453 * 17 16 12 46 46 H 1.09004 * 109.46745 * 290.00664 * 17 16 12 47 47 H 0.97007 * 120.00113 * 0.02562 * 20 18 17 48 48 H 0.97002 * 120.00175 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.6009 -1.7176 1.2983 6 9 1.6764 0.0052 2.3882 7 6 3.5412 -0.8365 1.1851 8 8 4.2362 -0.0530 1.7967 9 7 4.1115 -1.8102 0.4481 10 6 3.2744 -2.8177 -0.2079 11 6 5.5684 -1.8611 0.3030 12 6 6.1631 -2.7148 1.4248 13 1 6.1837 -2.1963 2.3833 14 6 7.5015 -3.3678 1.0524 15 6 6.9349 -4.5667 1.8258 16 7 5.5848 -4.0693 1.5019 17 6 4.6867 -4.1933 2.6577 18 6 3.9305 -5.4938 2.5691 19 8 4.1206 -6.2434 1.6347 20 7 3.0430 -5.8240 3.5281 21 6 2.3546 -7.0069 3.4472 22 1 2.5238 -7.6743 2.6152 23 6 1.4392 -7.3470 4.4357 24 7 1.2336 -6.5351 5.4483 25 14 0.5070 -8.9623 4.3294 26 1 -0.3968 -9.0901 5.5008 27 1 -0.2951 -8.9897 3.0800 28 1 1.4718 -10.0912 4.3231 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 3.1263 1.4438 -0.0900 34 1 1.6051 1.9816 -0.8417 35 1 1.7520 1.9298 0.9315 36 1 3.0524 -3.6199 0.4959 37 1 2.3436 -2.3572 -0.5392 38 1 3.8042 -3.2259 -1.0686 39 1 5.9747 -0.8514 0.3605 40 1 5.8223 -2.3005 -0.6616 41 1 7.6296 -3.5456 -0.0153 42 1 8.3702 -2.9024 1.5184 43 1 7.1624 -4.5427 2.8916 44 1 7.1653 -5.5279 1.3665 45 1 3.9814 -3.3623 2.6607 46 1 5.2727 -4.1757 3.5767 47 1 2.8907 -5.2243 4.2752 48 1 0.5948 -6.7727 6.1386 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691653478.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:25 Heat of formation + Delta-G solvation = -83.187951 kcal Electronic energy + Delta-G solvation = -30194.737436 eV Core-core repulsion = 26007.507801 eV Total energy + Delta-G solvation = -4187.229634 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.190 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -47.82956 -40.59234 -39.34522 -37.73602 -35.83061 -35.31679 -33.90260 -31.38738 -30.80761 -29.55095 -27.59801 -27.37832 -26.22036 -25.79053 -23.72467 -23.27763 -20.95663 -19.81396 -19.31729 -19.21266 -17.89770 -17.48242 -16.89646 -16.38768 -16.03071 -15.85096 -15.50088 -15.28205 -14.70365 -14.52224 -14.21569 -14.18551 -13.76953 -13.71946 -13.37989 -13.30010 -13.03240 -12.80112 -12.66324 -12.42842 -12.38848 -12.29796 -12.15054 -11.62200 -11.56058 -11.51837 -11.41040 -11.28025 -11.14686 -11.04307 -10.86372 -10.80313 -10.53589 -10.44987 -10.21122 -9.65186 -9.49393 -8.96940 -8.51220 -8.18881 -7.96409 -6.41219 -3.82627 2.39889 2.78869 3.18949 3.25135 3.28940 3.89715 4.00015 4.13293 4.22642 4.24736 4.49138 4.50559 4.61454 4.82417 4.97892 5.03910 5.08295 5.12911 5.17572 5.21086 5.30098 5.33621 5.43615 5.45143 5.46522 5.56787 5.62534 5.66079 5.67261 5.70176 5.74773 5.77324 5.80090 5.98265 6.00680 6.05635 6.10464 6.20919 6.28230 6.39649 6.58451 7.17696 7.28241 7.54435 8.00116 8.05480 8.61777 9.18014 9.54545 10.06612 10.76371 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.009998 B = 0.004201 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2799.894769 B = 6663.873173 C = 8622.470097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.149 4.149 4 C 0.080 3.920 5 H 0.108 0.892 6 F -0.184 7.184 7 C 0.493 3.507 8 O -0.526 6.526 9 N -0.599 5.599 10 C 0.076 3.924 11 C 0.138 3.862 12 C 0.003 3.997 13 H 0.079 0.921 14 C -0.136 4.136 15 C 0.004 3.996 16 N -0.429 5.429 17 C 0.011 3.989 18 C 0.447 3.553 19 O -0.575 6.575 20 N -0.566 5.566 21 C -0.300 4.300 22 H 0.102 0.898 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.930 3.070 26 H -0.284 1.284 27 H -0.274 1.274 28 H -0.274 1.274 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.088 0.912 45 H 0.079 0.921 46 H 0.056 0.944 47 H 0.391 0.609 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.491 13.313 -11.164 17.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.134 4.134 3 C -0.207 4.207 4 C 0.041 3.959 5 H 0.126 0.874 6 F -0.164 7.164 7 C 0.279 3.721 8 O -0.402 6.402 9 N -0.331 5.331 10 C -0.067 4.067 11 C 0.015 3.985 12 C -0.108 4.108 13 H 0.097 0.903 14 C -0.175 4.175 15 C -0.125 4.125 16 N -0.151 5.151 17 C -0.121 4.121 18 C 0.232 3.768 19 O -0.458 6.458 20 N -0.204 5.204 21 C -0.429 4.429 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.757 3.243 26 H -0.210 1.210 27 H -0.199 1.199 28 H -0.199 1.199 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.112 0.888 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.106 0.894 45 H 0.097 0.903 46 H 0.074 0.926 47 H 0.224 0.776 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.422 12.918 -11.818 18.058 hybrid contribution -0.364 -0.261 1.536 1.600 sum 4.058 12.657 -10.282 16.804 Atomic orbital electron populations 1.21855 0.93234 1.02755 1.02839 1.21672 0.97727 0.97854 0.96150 1.21822 1.01370 0.94719 1.02756 1.21588 0.92756 0.96995 0.84575 0.87448 1.92860 1.91964 1.79715 1.51908 1.20939 0.90603 0.81082 0.79485 1.90719 1.63964 1.42464 1.43047 1.47695 1.07376 1.27884 1.50192 1.22008 0.94210 0.91468 0.98975 1.21496 0.78716 1.00030 0.98234 1.23893 0.94649 0.92750 0.99531 0.90310 1.23165 0.95783 0.96876 1.01633 1.23735 0.90104 0.99584 0.99054 1.68749 1.06155 1.06024 1.34157 1.22479 0.97694 0.98744 0.93178 1.19635 0.84029 0.88108 0.85059 1.90514 1.68134 1.52794 1.34376 1.41898 1.36070 1.20174 1.22211 1.19624 1.17894 0.96679 1.08729 0.88026 1.25251 0.97895 0.99371 0.95341 1.69608 1.35994 1.37143 1.11495 0.85941 0.79180 0.81582 0.77640 1.20980 1.19909 1.19948 0.91884 0.91719 0.91724 0.88991 0.92334 0.92016 0.91552 0.90715 0.91879 0.90089 0.89855 0.89665 0.88836 0.90748 0.91699 0.89356 0.90253 0.92629 0.77617 0.91811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.11 37.16 0.34 -0.94 16 2 C -0.11 -1.12 2.47 -90.62 -0.22 -1.34 16 3 C -0.15 -1.50 8.83 37.15 0.33 -1.17 16 4 C 0.08 1.02 2.55 -27.88 -0.07 0.95 16 5 H 0.11 1.29 7.06 -51.93 -0.37 0.92 16 6 F -0.18 -2.83 15.65 2.25 0.04 -2.79 16 7 C 0.49 7.01 6.06 -10.99 -0.07 6.94 16 8 O -0.53 -9.11 16.20 5.55 0.09 -9.02 16 9 N -0.60 -7.47 2.59 -181.57 -0.47 -7.95 16 10 C 0.08 0.89 9.38 59.85 0.56 1.45 16 11 C 0.14 1.60 5.57 -4.04 -0.02 1.57 16 12 C 0.00 0.03 3.35 -71.44 -0.24 -0.20 16 13 H 0.08 1.12 7.91 -51.93 -0.41 0.70 16 14 C -0.14 -1.46 8.00 -26.20 -0.21 -1.67 16 15 C 0.00 0.06 7.71 -7.55 -0.06 0.00 16 16 N -0.43 -6.79 5.01 -237.95 -1.19 -7.98 16 17 C 0.01 0.21 4.74 -4.98 -0.02 0.18 16 18 C 0.45 10.43 7.85 -10.99 -0.09 10.34 16 19 O -0.57 -15.20 16.01 5.55 0.09 -15.11 16 20 N -0.57 -14.34 5.29 -10.97 -0.06 -14.40 16 21 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 22 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 23 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 24 N -0.90 -24.59 13.05 55.50 0.72 -23.86 16 25 Si 0.93 20.93 29.55 -169.99 -5.02 15.91 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 28 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.61 7.94 -51.93 -0.41 0.19 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.09 0.76 6.78 -51.93 -0.35 0.41 16 33 H 0.06 0.65 7.43 -51.93 -0.39 0.27 16 34 H 0.06 0.50 8.14 -51.92 -0.42 0.07 16 35 H 0.07 0.74 7.52 -51.93 -0.39 0.35 16 36 H 0.07 1.13 7.49 -51.93 -0.39 0.74 16 37 H 0.06 0.58 5.23 -51.93 -0.27 0.31 16 38 H 0.08 0.86 7.83 -51.93 -0.41 0.46 16 39 H 0.08 0.95 7.49 -51.93 -0.39 0.57 16 40 H 0.09 0.84 7.59 -51.93 -0.39 0.45 16 41 H 0.09 0.91 7.94 -51.93 -0.41 0.50 16 42 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 43 H 0.06 0.89 7.42 -51.93 -0.39 0.51 16 44 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 45 H 0.08 1.43 7.80 -51.93 -0.41 1.02 16 46 H 0.06 0.97 7.30 -51.93 -0.38 0.59 16 47 H 0.39 9.68 7.90 -40.82 -0.32 9.36 16 48 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 390.27 15.07 5.88 5.88 Total: -1.00 -32.81 390.27 -7.63 -40.45 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -7.70 Total: 10.68 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: -0.01 Total: 8.20 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: -1.00 Total: -54.19 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: 0.18 Total: -24.13 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.04 Total: -2.79 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.81 -7.63 -40.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691653478.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.739 kcal (2) G-P(sol) polarization free energy of solvation -32.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds