Wall clock time and date at job start Tue Mar 31 2020 05:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47248 * 2 1 4 4 C 1.53008 * 109.46714 * 119.99945 * 2 1 3 5 5 H 1.09008 * 109.46484 * 185.00260 * 4 2 1 6 6 F 1.39895 * 109.47046 * 304.99825 * 4 2 1 7 7 C 1.50699 * 109.47054 * 65.00054 * 4 2 1 8 8 O 1.21272 * 120.00069 * 314.41478 * 7 4 2 9 9 N 1.34775 * 119.99542 * 134.41108 * 7 4 2 10 10 C 1.46501 * 120.00496 * 3.28872 * 9 7 4 11 11 C 1.46507 * 120.00052 * 183.28591 * 9 7 4 12 12 C 1.53002 * 109.46732 * 90.00308 * 11 9 7 13 13 H 1.08991 * 112.96020 * 74.67087 * 12 11 9 14 14 C 1.53934 * 113.75411 * 206.31694 * 12 11 9 15 15 C 1.53938 * 86.33976 * 138.03728 * 14 12 11 16 16 N 1.47955 * 113.75772 * 303.01837 * 12 11 9 17 17 C 1.46906 * 110.99777 * 108.10591 * 16 12 11 18 18 C 1.50700 * 109.47290 * 169.99700 * 17 16 12 19 19 O 1.21291 * 119.99929 * 0.02562 * 18 17 16 20 20 N 1.34773 * 120.00242 * 179.97438 * 18 17 16 21 21 C 1.37096 * 120.00150 * 180.02562 * 20 18 17 22 22 H 1.07995 * 120.00384 * 0.02562 * 21 20 18 23 23 C 1.38954 * 119.99740 * 179.97438 * 21 20 18 24 24 N 1.31412 * 120.00307 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99699 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46975 * 90.00580 * 25 23 21 27 27 H 1.48503 * 109.47135 * 210.00083 * 25 23 21 28 28 H 1.48496 * 109.47214 * 330.00695 * 25 23 21 29 29 H 1.09005 * 109.47004 * 60.00766 * 1 2 3 30 30 H 1.09008 * 109.47124 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47665 * 299.99999 * 1 2 3 32 32 H 1.09000 * 109.47440 * 239.99515 * 2 1 3 33 33 H 1.08997 * 109.47352 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.46796 * 299.99894 * 3 2 1 35 35 H 1.08998 * 109.46786 * 59.99464 * 3 2 1 36 36 H 1.09004 * 109.47089 * 84.34912 * 10 9 7 37 37 H 1.08995 * 109.47481 * 204.35147 * 10 9 7 38 38 H 1.09000 * 109.47168 * 324.35847 * 10 9 7 39 39 H 1.08996 * 109.46951 * 210.00426 * 11 9 7 40 40 H 1.08999 * 109.46837 * 330.00758 * 11 9 7 41 41 H 1.09005 * 113.73605 * 252.39366 * 14 12 11 42 42 H 1.09002 * 113.73997 * 23.68105 * 14 12 11 43 43 H 1.09000 * 113.76070 * 90.59605 * 15 14 12 44 44 H 1.09000 * 113.76232 * 221.84546 * 15 14 12 45 45 H 1.09003 * 109.47015 * 289.99957 * 17 16 12 46 46 H 1.08992 * 109.47150 * 49.99847 * 17 16 12 47 47 H 0.97001 * 120.00114 * 0.02562 * 20 18 17 48 48 H 0.96998 * 120.00110 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 3.1263 -0.6443 1.2952 6 9 1.4821 -0.1315 2.3886 7 6 1.6412 -2.1733 1.1890 8 8 0.5112 -2.4792 0.8724 9 7 2.5405 -3.1319 1.4867 10 6 3.8840 -2.7613 1.9384 11 6 2.1747 -4.5448 1.3586 12 6 2.5059 -5.0313 -0.0538 13 1 3.5738 -5.1809 -0.2124 14 6 1.6377 -6.2130 -0.5221 15 6 1.5601 -5.4902 -1.8790 16 7 1.8482 -4.2486 -1.1233 17 6 2.8213 -3.4101 -1.8363 18 6 2.1733 -2.8207 -3.0626 19 8 1.0147 -3.0737 -3.3173 20 7 2.8808 -2.0115 -3.8757 21 6 2.2911 -1.4749 -4.9909 22 1 1.2596 -1.7002 -5.2178 23 6 3.0205 -0.6402 -5.8289 24 7 4.2755 -0.3657 -5.5527 25 14 2.2172 0.0904 -7.3490 26 1 1.5956 1.3938 -7.0023 27 1 3.2446 0.2963 -8.4013 28 1 1.1728 -0.8379 -7.8516 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8899 36 1 3.8677 -2.5753 3.0124 37 1 4.5775 -3.5735 1.7208 38 1 4.2062 -1.8591 1.4184 39 1 2.7347 -5.1325 2.0859 40 1 1.1067 -4.6616 1.5419 41 1 2.1724 -7.1621 -0.5605 42 1 0.6794 -6.2844 -0.0076 43 1 2.3513 -5.7733 -2.5733 44 1 0.5690 -5.5120 -2.3322 45 1 3.1574 -2.6065 -1.1811 46 1 3.6757 -4.0179 -2.1335 47 1 3.8072 -1.8088 -3.6718 48 1 4.7845 0.2173 -6.1375 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691653479.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:29 Heat of formation + Delta-G solvation = -75.635276 kcal Electronic energy + Delta-G solvation = -30958.044173 eV Core-core repulsion = 26771.142047 eV Total energy + Delta-G solvation = -4186.902126 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.190 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -47.82349 -40.37902 -39.11670 -37.65001 -35.66846 -34.93026 -33.88520 -31.34162 -30.72071 -29.50259 -27.51593 -26.85248 -26.29103 -25.69947 -23.64070 -23.29170 -20.58645 -19.47911 -19.24037 -19.15750 -17.89059 -17.60793 -16.86469 -16.18563 -15.94833 -15.76811 -15.40517 -15.22912 -14.61608 -14.37284 -14.25679 -13.80571 -13.72701 -13.60074 -13.35305 -13.13423 -12.78790 -12.71396 -12.69172 -12.53038 -12.21361 -11.93265 -11.78438 -11.65530 -11.60195 -11.46082 -11.26198 -11.05641 -10.92108 -10.73991 -10.67919 -10.44251 -10.43041 -10.38453 -10.19672 -9.48321 -9.16588 -8.83470 -8.38435 -8.13600 -7.94150 -6.40682 -3.80866 2.64295 2.83739 3.18290 3.26804 3.32849 3.91170 4.01306 4.21258 4.31415 4.52609 4.57915 4.60847 4.82890 4.92055 4.98247 5.03294 5.08573 5.23584 5.24200 5.28145 5.42389 5.45968 5.50987 5.55000 5.56351 5.69261 5.75070 5.79474 5.85259 5.89309 5.99151 6.10372 6.13019 6.23215 6.28689 6.36875 6.39798 6.44782 6.54310 6.75012 6.88925 7.27539 7.37614 7.56428 8.07509 8.26285 8.63448 9.20122 9.55632 10.08420 10.77222 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.010851 B = 0.004841 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.797983 B = 5782.921698 C = 7371.071058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.108 4.108 3 C -0.146 4.146 4 C 0.080 3.920 5 H 0.096 0.904 6 F -0.193 7.193 7 C 0.498 3.502 8 O -0.478 6.478 9 N -0.614 5.614 10 C 0.072 3.928 11 C 0.138 3.862 12 C 0.003 3.997 13 H 0.074 0.926 14 C -0.137 4.137 15 C 0.019 3.981 16 N -0.428 5.428 17 C 0.015 3.985 18 C 0.446 3.554 19 O -0.571 6.571 20 N -0.567 5.567 21 C -0.295 4.295 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.904 5.904 25 Si 0.927 3.073 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 H 0.054 0.946 30 H 0.095 0.905 31 H 0.048 0.952 32 H 0.093 0.907 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.091 0.909 41 H 0.068 0.932 42 H 0.091 0.909 43 H 0.062 0.938 44 H 0.093 0.907 45 H 0.078 0.922 46 H 0.047 0.953 47 H 0.390 0.610 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.728 -5.425 16.208 17.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.127 4.127 3 C -0.203 4.203 4 C 0.041 3.959 5 H 0.114 0.886 6 F -0.174 7.174 7 C 0.282 3.718 8 O -0.349 6.349 9 N -0.349 5.349 10 C -0.071 4.071 11 C 0.016 3.984 12 C -0.108 4.108 13 H 0.092 0.908 14 C -0.176 4.176 15 C -0.109 4.109 16 N -0.151 5.151 17 C -0.117 4.117 18 C 0.231 3.769 19 O -0.454 6.454 20 N -0.204 5.204 21 C -0.424 4.424 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.545 5.545 25 Si 0.754 3.246 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.195 1.195 29 H 0.073 0.927 30 H 0.113 0.887 31 H 0.067 0.933 32 H 0.111 0.889 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.109 0.891 41 H 0.087 0.913 42 H 0.109 0.891 43 H 0.080 0.920 44 H 0.111 0.889 45 H 0.096 0.904 46 H 0.065 0.935 47 H 0.223 0.777 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.898 -5.143 15.932 16.849 hybrid contribution 1.431 0.263 -0.948 1.736 sum 3.329 -4.881 14.985 16.107 Atomic orbital electron populations 1.22039 0.93172 1.05373 1.00969 1.21524 0.98844 0.96599 0.95732 1.21825 1.00725 0.95226 1.02539 1.21828 0.99017 0.90142 0.84913 0.88609 1.92825 1.87665 1.84765 1.52137 1.20736 0.85804 0.87374 0.77843 1.90667 1.19170 1.82131 1.42978 1.47758 1.13204 1.06393 1.67538 1.21909 0.83621 1.01875 0.99711 1.21410 1.02518 0.80000 0.94516 1.23982 0.97579 0.94604 0.94665 0.90793 1.23374 1.00352 0.96214 0.97611 1.23700 1.03104 0.89417 0.94729 1.68535 1.30168 1.10778 1.05573 1.22417 0.94429 0.98476 0.96391 1.19670 0.87724 0.84158 0.85392 1.90542 1.17022 1.63228 1.74563 1.41858 1.13527 1.42388 1.22659 1.19672 0.98278 1.24675 0.99824 0.88041 1.25215 0.95532 0.97556 0.99569 1.69605 1.08089 1.37595 1.39260 0.85899 0.78616 0.79388 0.80660 1.20401 1.20981 1.19465 0.92678 0.88680 0.93258 0.88873 0.92652 0.91480 0.92448 0.92348 0.90577 0.91130 0.90381 0.89075 0.91334 0.89077 0.92001 0.88851 0.90414 0.93451 0.77746 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 8.71 37.16 0.32 -2.40 16 2 C -0.11 -1.70 2.75 -90.62 -0.25 -1.95 16 3 C -0.15 -1.98 9.11 37.16 0.34 -1.64 16 4 C 0.08 1.11 3.08 -27.88 -0.09 1.02 16 5 H 0.10 1.04 5.49 -51.92 -0.29 0.75 16 6 F -0.19 -2.82 16.03 2.25 0.04 -2.78 16 7 C 0.50 7.55 6.27 -10.99 -0.07 7.48 16 8 O -0.48 -9.05 13.01 5.56 0.07 -8.98 16 9 N -0.61 -7.22 2.83 -181.57 -0.51 -7.74 16 10 C 0.07 0.57 10.13 59.85 0.61 1.17 16 11 C 0.14 1.53 5.59 -4.04 -0.02 1.50 16 12 C 0.00 0.03 3.58 -66.66 -0.24 -0.21 16 13 H 0.07 0.81 7.79 -51.93 -0.40 0.40 16 14 C -0.14 -1.60 7.84 -25.79 -0.20 -1.80 16 15 C 0.02 0.31 6.77 -2.64 -0.02 0.29 16 16 N -0.43 -7.24 4.82 -231.17 -1.11 -8.35 16 17 C 0.02 0.27 5.31 -4.97 -0.03 0.25 16 18 C 0.45 10.61 7.59 -10.99 -0.08 10.52 16 19 O -0.57 -15.74 15.14 5.55 0.08 -15.66 16 20 N -0.57 -14.30 5.29 -10.97 -0.06 -14.36 16 21 C -0.29 -8.22 9.68 -14.93 -0.14 -8.36 16 22 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.37 13.05 55.50 0.72 -23.64 16 25 Si 0.93 21.19 29.55 -169.99 -5.02 16.16 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 28 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.09 1.88 5.26 -51.92 -0.27 1.61 16 31 H 0.05 0.78 7.68 -51.93 -0.40 0.38 16 32 H 0.09 1.71 8.14 -51.93 -0.42 1.28 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.72 7.94 -51.93 -0.41 0.31 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.46 8.03 -51.93 -0.42 0.05 16 38 H 0.07 0.53 5.93 -51.93 -0.31 0.22 16 39 H 0.08 0.60 8.07 -51.93 -0.42 0.19 16 40 H 0.09 1.19 7.11 -51.93 -0.37 0.82 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.09 1.06 7.92 -51.93 -0.41 0.65 16 43 H 0.06 0.97 7.78 -51.93 -0.40 0.57 16 44 H 0.09 1.69 8.10 -51.93 -0.42 1.27 16 45 H 0.08 1.32 7.91 -51.93 -0.41 0.91 16 46 H 0.05 0.78 7.69 -51.93 -0.40 0.38 16 47 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 48 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 387.87 15.07 5.85 5.85 Total: -1.00 -33.57 387.87 -7.62 -41.18 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -7.70 Total: 11.94 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: 0.03 Total: 6.38 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: -0.96 Total: -54.09 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: 0.16 Total: -24.64 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.04 Total: -2.78 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.57 -7.62 -41.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691653479.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.451 kcal (2) G-P(sol) polarization free energy of solvation -33.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds