Wall clock time and date at job start Tue Mar 31 2020 05:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47061 * 2 1 4 4 C 1.53004 * 109.47357 * 120.00214 * 2 1 3 5 5 H 1.09002 * 109.47086 * 185.00094 * 4 2 1 6 6 F 1.39896 * 109.46874 * 305.00063 * 4 2 1 7 7 C 1.50696 * 109.46951 * 65.00170 * 4 2 1 8 8 O 1.21283 * 120.00047 * 314.99560 * 7 4 2 9 9 N 1.34774 * 120.00098 * 135.00117 * 7 4 2 10 10 C 1.46508 * 119.99804 * 359.97438 * 9 7 4 11 11 C 1.46495 * 120.00476 * 179.97438 * 9 7 4 12 12 C 1.52994 * 109.47142 * 89.99699 * 11 9 7 13 13 H 1.09001 * 112.79371 * 284.19519 * 12 11 9 14 14 C 1.53515 * 113.47612 * 153.38006 * 12 11 9 15 15 C 1.53516 * 83.57865 * 219.21291 * 14 12 11 16 16 N 1.47484 * 87.93044 * 26.02725 * 15 14 12 17 17 C 1.46906 * 110.99709 * 221.29807 * 16 15 14 18 18 C 1.50698 * 109.46688 * 265.96661 * 17 16 15 19 19 O 1.21293 * 120.00006 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99538 * 179.97438 * 18 17 16 21 21 C 1.37102 * 119.99634 * 180.02562 * 20 18 17 22 22 H 1.08001 * 120.00399 * 0.02562 * 21 20 18 23 23 C 1.38954 * 120.00062 * 180.02562 * 21 20 18 24 24 N 1.31414 * 119.99693 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00141 * 179.72913 * 23 21 20 26 26 H 1.48502 * 109.47314 * 180.27179 * 25 23 21 27 27 H 1.48506 * 109.46947 * 300.27161 * 25 23 21 28 28 H 1.48493 * 109.47595 * 60.27030 * 25 23 21 29 29 H 1.08993 * 109.47198 * 59.99893 * 1 2 3 30 30 H 1.09009 * 109.46762 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47142 * 299.99673 * 1 2 3 32 32 H 1.09004 * 109.46993 * 240.00188 * 2 1 3 33 33 H 1.09002 * 109.47518 * 180.02562 * 3 2 1 34 34 H 1.09006 * 109.47484 * 300.00009 * 3 2 1 35 35 H 1.09004 * 109.47063 * 60.00231 * 3 2 1 36 36 H 1.09000 * 109.46881 * 269.99727 * 10 9 7 37 37 H 1.08996 * 109.46926 * 29.99872 * 10 9 7 38 38 H 1.09000 * 109.47049 * 150.00085 * 10 9 7 39 39 H 1.09008 * 109.47039 * 330.00011 * 11 9 7 40 40 H 1.08998 * 109.47667 * 210.00583 * 11 9 7 41 41 H 1.08993 * 114.17417 * 332.86506 * 14 12 11 42 42 H 1.09008 * 114.16607 * 105.37958 * 14 12 11 43 43 H 1.08998 * 113.47778 * 271.26234 * 15 14 12 44 44 H 1.08994 * 113.47825 * 140.79327 * 15 14 12 45 45 H 1.09003 * 109.46625 * 145.97243 * 17 16 15 46 46 H 1.08993 * 109.47154 * 25.97386 * 17 16 15 47 47 H 0.96991 * 120.00493 * 0.02562 * 20 18 17 48 48 H 0.97005 * 120.00032 * 359.72836 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1264 -0.6443 1.2951 6 9 1.4822 -0.1316 2.3886 7 6 1.6414 -2.1733 1.1888 8 8 0.5143 -2.4797 0.8621 9 7 2.5374 -3.1315 1.4978 10 6 3.8990 -2.7615 1.8920 11 6 2.1498 -4.5431 1.4396 12 6 2.4299 -5.0915 0.0391 13 1 1.6956 -4.7645 -0.6971 14 6 2.6878 -6.6047 0.0152 15 6 3.7515 -6.2327 -1.0274 16 7 3.8255 -4.9008 -0.3983 17 6 3.9190 -3.8434 -1.4138 18 6 5.3677 -3.5067 -1.6563 19 8 6.2368 -4.0905 -1.0438 20 7 5.6977 -2.5576 -2.5545 21 6 7.0158 -2.2517 -2.7755 22 1 7.7896 -2.7714 -2.2302 23 6 7.3560 -1.2728 -3.7012 24 7 6.4144 -0.6406 -4.3651 25 14 9.1515 -0.8506 -3.9968 26 1 9.2459 0.2221 -5.0194 27 1 9.7648 -0.3809 -2.7285 28 1 9.8711 -2.0573 -4.4774 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 4.5324 -2.7104 1.0064 37 1 3.8832 -1.7890 2.3840 38 1 4.2945 -3.5098 2.5789 39 1 1.0865 -4.6374 1.6608 40 1 2.7248 -5.1084 2.1730 41 1 3.0941 -7.0029 0.9448 42 1 1.8587 -7.1925 -0.3789 43 1 3.3698 -6.2101 -2.0481 44 1 4.6718 -6.8090 -0.9335 45 1 3.3934 -2.9552 -1.0629 46 1 3.4661 -4.1904 -2.3424 47 1 5.0028 -2.0910 -3.0445 48 1 5.4821 -0.8601 -4.2118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691653481.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:35 Heat of formation + Delta-G solvation = -76.596770 kcal Electronic energy + Delta-G solvation = -30467.636210 eV Core-core repulsion = 26280.692391 eV Total energy + Delta-G solvation = -4186.943819 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.190 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -47.99978 -40.68688 -39.46945 -37.94046 -35.81865 -35.20381 -34.30604 -31.43019 -30.77381 -29.63237 -27.58161 -27.16375 -26.29686 -25.66957 -23.69257 -23.36929 -20.84047 -19.84923 -19.71468 -19.27587 -17.94945 -17.69288 -17.06966 -16.39570 -16.31350 -15.94165 -15.68356 -15.53127 -14.67615 -14.51429 -14.36513 -13.97323 -13.82167 -13.73120 -13.56025 -13.30157 -12.94003 -12.87411 -12.82178 -12.61280 -12.51637 -12.17453 -12.04826 -11.67910 -11.65537 -11.43106 -11.25816 -11.18880 -11.03124 -10.98886 -10.92330 -10.72214 -10.58620 -10.23569 -9.89178 -9.56878 -9.50247 -9.06520 -8.59289 -8.28963 -8.06409 -6.77887 -3.91507 2.28938 2.72413 3.27916 3.32297 3.52292 3.79617 3.91064 4.09170 4.27281 4.30016 4.42608 4.50187 4.68290 4.74230 4.86665 5.02785 5.07896 5.14929 5.16031 5.25191 5.29908 5.34855 5.36305 5.44514 5.53459 5.54673 5.60218 5.64590 5.66329 5.70895 5.82801 5.88260 5.93643 5.97966 5.99088 6.00347 6.13623 6.19999 6.26315 6.45185 6.49123 7.07489 7.20251 7.77045 7.92285 8.04672 8.56965 8.77499 9.44390 9.85595 10.65199 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.009630 B = 0.004612 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2906.927530 B = 6069.304419 C = 8094.649510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.109 4.109 3 C -0.149 4.149 4 C 0.079 3.921 5 H 0.104 0.896 6 F -0.190 7.190 7 C 0.493 3.507 8 O -0.522 6.522 9 N -0.596 5.596 10 C 0.075 3.925 11 C 0.135 3.865 12 C 0.003 3.997 13 H 0.079 0.921 14 C -0.136 4.136 15 C 0.004 3.996 16 N -0.429 5.429 17 C 0.011 3.989 18 C 0.449 3.551 19 O -0.567 6.567 20 N -0.578 5.578 21 C -0.381 4.381 22 H 0.098 0.902 23 C -0.009 4.009 24 N -0.901 5.901 25 Si 1.090 2.910 26 H -0.279 1.279 27 H -0.284 1.284 28 H -0.284 1.284 29 H 0.053 0.947 30 H 0.091 0.909 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.075 0.925 43 H 0.065 0.935 44 H 0.089 0.911 45 H 0.079 0.921 46 H 0.055 0.945 47 H 0.374 0.626 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.039 -3.370 9.944 15.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.128 4.128 3 C -0.207 4.207 4 C 0.040 3.960 5 H 0.122 0.878 6 F -0.171 7.171 7 C 0.279 3.721 8 O -0.398 6.398 9 N -0.327 5.327 10 C -0.068 4.068 11 C 0.012 3.988 12 C -0.107 4.107 13 H 0.097 0.903 14 C -0.174 4.174 15 C -0.125 4.125 16 N -0.151 5.151 17 C -0.121 4.121 18 C 0.234 3.766 19 O -0.450 6.450 20 N -0.217 5.217 21 C -0.510 4.510 22 H 0.116 0.884 23 C -0.211 4.211 24 N -0.540 5.540 25 Si 0.916 3.084 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.211 1.211 29 H 0.072 0.928 30 H 0.110 0.890 31 H 0.074 0.926 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.113 0.887 42 H 0.094 0.906 43 H 0.083 0.917 44 H 0.107 0.893 45 H 0.097 0.903 46 H 0.073 0.927 47 H 0.206 0.794 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.451 -2.729 9.813 13.895 hybrid contribution -1.935 -0.689 -0.119 2.057 sum -11.386 -3.418 9.695 15.339 Atomic orbital electron populations 1.22103 0.93330 1.05043 1.01489 1.21537 0.98400 0.97095 0.95757 1.21852 1.01466 0.94687 1.02646 1.21787 0.99797 0.89564 0.84844 0.87798 1.92841 1.87612 1.84633 1.52002 1.20972 0.85396 0.87970 0.77766 1.90593 1.19869 1.82812 1.46538 1.47816 1.12488 1.06299 1.66143 1.22013 0.81924 1.00847 1.01974 1.21521 1.01308 0.79950 0.95976 1.23899 0.92773 0.96010 0.98064 0.90349 1.23165 0.98969 0.94634 1.00617 1.23744 0.99802 0.92455 0.96510 1.68774 1.18750 1.01093 1.26478 1.22484 0.97474 0.97033 0.95116 1.19561 0.89286 0.83821 0.83907 1.90530 1.49997 1.53660 1.50781 1.41966 1.08395 1.34639 1.36696 1.20501 0.83359 1.22378 1.24784 0.88388 1.26480 1.07898 0.93454 0.93305 1.70911 1.00859 1.41283 1.40923 0.83150 0.71916 0.76637 0.76717 1.20411 1.20996 1.21058 0.92753 0.89024 0.92628 0.89425 0.92038 0.91591 0.92094 0.90503 0.91647 0.90242 0.89572 0.89602 0.88739 0.90639 0.91702 0.89289 0.90323 0.92689 0.79375 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 8.71 37.16 0.32 -1.71 16 2 C -0.11 -1.35 2.75 -90.62 -0.25 -1.60 16 3 C -0.15 -1.68 9.11 37.16 0.34 -1.34 16 4 C 0.08 1.01 2.85 -27.88 -0.08 0.93 16 5 H 0.10 1.21 5.86 -51.93 -0.30 0.91 16 6 F -0.19 -2.59 16.03 2.25 0.04 -2.55 16 7 C 0.49 6.84 7.01 -10.99 -0.08 6.76 16 8 O -0.52 -8.24 13.37 5.55 0.07 -8.17 16 9 N -0.60 -7.52 2.59 -181.57 -0.47 -8.00 16 10 C 0.07 0.91 9.48 59.85 0.57 1.48 16 11 C 0.14 1.55 5.60 -4.05 -0.02 1.53 16 12 C 0.00 0.04 3.35 -71.41 -0.24 -0.20 16 13 H 0.08 1.02 7.91 -51.93 -0.41 0.61 16 14 C -0.14 -1.40 8.00 -26.20 -0.21 -1.61 16 15 C 0.00 0.05 7.71 -7.53 -0.06 -0.01 16 16 N -0.43 -6.56 4.85 -237.89 -1.15 -7.72 16 17 C 0.01 0.19 4.62 -4.97 -0.02 0.17 16 18 C 0.45 10.21 7.85 -10.99 -0.09 10.13 16 19 O -0.57 -14.92 16.01 5.55 0.09 -14.83 16 20 N -0.58 -14.12 5.28 -10.96 -0.06 -14.18 16 21 C -0.38 -10.42 9.68 -14.93 -0.14 -10.57 16 22 H 0.10 2.85 7.16 -52.49 -0.38 2.47 16 23 C -0.01 -0.24 5.50 -17.47 -0.10 -0.33 16 24 N -0.90 -24.75 13.68 55.50 0.76 -23.99 16 25 Si 1.09 23.83 29.92 -169.99 -5.09 18.75 16 26 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 27 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 28 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 1.30 5.25 -51.92 -0.27 1.03 16 31 H 0.05 0.69 7.68 -51.93 -0.40 0.29 16 32 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.66 7.94 -51.93 -0.41 0.24 16 36 H 0.08 1.17 7.21 -51.93 -0.37 0.80 16 37 H 0.06 0.69 6.23 -51.93 -0.32 0.36 16 38 H 0.08 0.88 7.89 -51.93 -0.41 0.47 16 39 H 0.09 0.98 7.42 -51.92 -0.39 0.60 16 40 H 0.09 0.87 7.63 -51.93 -0.40 0.47 16 41 H 0.09 0.90 7.94 -51.93 -0.41 0.49 16 42 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 43 H 0.06 0.85 7.42 -51.93 -0.39 0.47 16 44 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 45 H 0.08 1.30 7.83 -51.93 -0.41 0.89 16 46 H 0.06 0.90 7.30 -51.93 -0.38 0.52 16 47 H 0.37 8.54 6.73 -40.82 -0.27 8.26 16 48 H 0.26 6.89 6.78 -40.82 -0.28 6.62 16 LS Contribution 386.29 15.07 5.82 5.82 Total: -1.00 -32.45 386.29 -7.57 -40.03 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -7.53 Total: 11.20 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -0.06 Total: 3.64 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: -0.92 Total: -53.88 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: 0.16 Total: -22.99 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.04 Total: -2.55 kcal Atomic # 14 Polarization: 23.83 SS G_CDS: -5.09 Total: 18.75 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.45 -7.57 -40.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691653481.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.571 kcal (2) G-P(sol) polarization free energy of solvation -32.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds