Wall clock time and date at job start Tue Mar 31 2020 05:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47252 * 2 1 4 4 C 1.53001 * 109.47523 * 120.00110 * 2 1 3 5 5 H 1.09006 * 109.46732 * 54.71564 * 4 2 1 6 6 F 1.39903 * 109.46913 * 294.72041 * 4 2 1 7 7 C 1.50692 * 109.47534 * 174.71491 * 4 2 1 8 8 O 1.21287 * 119.99971 * 97.58993 * 7 4 2 9 9 N 1.34773 * 120.00395 * 277.59133 * 7 4 2 10 10 C 1.46502 * 120.00409 * 185.27158 * 9 7 4 11 11 C 1.46501 * 120.00024 * 5.26834 * 9 7 4 12 12 C 1.52998 * 109.47207 * 270.00544 * 11 9 7 13 13 H 1.08997 * 112.79085 * 75.80724 * 12 11 9 14 14 C 1.53512 * 113.47389 * 206.61853 * 12 11 9 15 15 C 1.53511 * 83.57709 * 140.78761 * 14 12 11 16 16 N 1.47477 * 87.93046 * 333.97487 * 15 14 12 17 17 C 1.46897 * 111.00083 * 138.70485 * 16 15 14 18 18 C 1.50698 * 109.47562 * 91.52410 * 17 16 15 19 19 O 1.21290 * 119.99667 * 0.02562 * 18 17 16 20 20 N 1.34773 * 120.00194 * 180.02562 * 18 17 16 21 21 C 1.37102 * 120.00017 * 179.97438 * 20 18 17 22 22 H 1.07996 * 119.99652 * 0.02562 * 21 20 18 23 23 C 1.38946 * 119.99960 * 180.02562 * 21 20 18 24 24 N 1.31418 * 119.99947 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 120.00116 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.46728 * 90.00074 * 25 23 21 27 27 H 1.48501 * 109.47173 * 210.00023 * 25 23 21 28 28 H 1.48493 * 109.47048 * 330.00233 * 25 23 21 29 29 H 1.08999 * 109.46982 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47112 * 300.00117 * 1 2 3 31 31 H 1.08999 * 109.46700 * 59.99785 * 1 2 3 32 32 H 1.09000 * 109.47112 * 239.99883 * 2 1 3 33 33 H 1.09003 * 109.47186 * 185.02338 * 3 2 1 34 34 H 1.08997 * 109.47155 * 305.01611 * 3 2 1 35 35 H 1.08989 * 109.47163 * 65.02307 * 3 2 1 36 36 H 1.08999 * 109.47114 * 265.24132 * 10 9 7 37 37 H 1.09005 * 109.46802 * 25.24142 * 10 9 7 38 38 H 1.08996 * 109.47499 * 145.23784 * 10 9 7 39 39 H 1.09002 * 109.47340 * 149.99870 * 11 9 7 40 40 H 1.09002 * 109.46830 * 30.00005 * 11 9 7 41 41 H 1.09002 * 114.17452 * 27.13811 * 14 12 11 42 42 H 1.09007 * 114.34511 * 254.44876 * 14 12 11 43 43 H 1.08994 * 113.47573 * 219.20349 * 15 14 12 44 44 H 1.09001 * 113.47344 * 88.74119 * 15 14 12 45 45 H 1.09005 * 109.46790 * 331.52199 * 17 16 15 46 46 H 1.08997 * 109.47367 * 211.52753 * 17 16 15 47 47 H 0.96997 * 120.00379 * 0.02562 * 20 18 17 48 48 H 0.96996 * 119.99818 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6015 -1.7180 1.2977 6 9 1.6755 0.0046 2.3883 7 6 3.5413 -0.8356 1.1855 8 8 4.2360 -0.0334 1.7728 9 7 4.1120 -1.8292 0.4760 10 6 5.5655 -2.0103 0.5072 11 6 3.2790 -2.7282 -0.3266 12 6 2.8543 -3.9261 0.5251 13 1 2.0653 -3.6803 1.2359 14 6 2.5645 -5.1893 -0.2976 15 6 3.2590 -5.9015 0.8716 16 7 3.9887 -4.6467 1.1325 17 6 4.0728 -4.3767 2.5740 18 6 5.3415 -4.9757 3.1242 19 8 6.1010 -5.5689 2.3878 20 7 5.6320 -4.8524 4.4344 21 6 6.7859 -5.3979 4.9350 22 1 7.4622 -5.9261 4.2793 23 6 7.0851 -5.2712 6.2860 24 7 8.1910 -5.7945 6.7659 25 14 5.9156 -4.3570 7.4200 26 1 4.9260 -5.3103 7.9831 27 1 6.6854 -3.7319 8.5254 28 1 5.2057 -3.3022 6.6529 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 3.1263 1.4438 -0.0900 34 1 1.6052 1.9816 -0.8416 35 1 1.7521 1.9297 0.9315 36 1 6.0144 -1.4934 -0.3409 37 1 5.9630 -1.5992 1.4352 38 1 5.8005 -3.0732 0.4507 39 1 3.8476 -3.0782 -1.1881 40 1 2.3929 -2.1935 -0.6690 41 1 3.1095 -5.2430 -1.2401 42 1 1.5054 -5.4264 -0.3989 43 1 3.9043 -6.7221 0.5585 44 1 2.5779 -6.1828 1.6748 45 1 3.2136 -4.8199 3.0774 46 1 4.0768 -3.2998 2.7423 47 1 5.0244 -4.3784 5.0234 48 1 8.4000 -5.7057 7.7089 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691653486.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:41 Heat of formation + Delta-G solvation = -73.228852 kcal Electronic energy + Delta-G solvation = -30313.968918 eV Core-core repulsion = 26127.171142 eV Total energy + Delta-G solvation = -4186.797775 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.190 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -48.02967 -40.80642 -39.48049 -37.94502 -35.98243 -35.41094 -33.93815 -31.71361 -30.98244 -29.44124 -28.50947 -27.56067 -25.97581 -25.69316 -23.59801 -23.58112 -21.10242 -19.97080 -19.60647 -19.36936 -18.36997 -17.59801 -17.12666 -16.47380 -16.02593 -15.97361 -15.67437 -15.32337 -14.82983 -14.72706 -14.64435 -14.14732 -14.03293 -13.74123 -13.43277 -13.25977 -13.18585 -12.91066 -12.68440 -12.60011 -12.44109 -12.34031 -12.23904 -12.07804 -11.85095 -11.74466 -11.56349 -11.42386 -11.31550 -11.17919 -11.04026 -10.94083 -10.70613 -10.56952 -9.95918 -9.76874 -9.54395 -9.13282 -8.60017 -8.34543 -8.15778 -6.29470 -3.80699 2.31299 2.71841 3.06571 3.09596 3.17739 3.72274 3.76657 3.94759 4.04032 4.12717 4.25670 4.31510 4.37079 4.60953 4.74288 4.75719 4.77772 4.88424 4.95760 5.11043 5.13376 5.20168 5.27412 5.29144 5.44084 5.45096 5.50176 5.51918 5.54101 5.57272 5.60168 5.64090 5.74749 5.82306 5.84158 5.93000 5.99076 6.03938 6.20302 6.34136 6.38666 7.00604 7.19089 7.59393 7.94229 8.15352 8.61609 8.96738 9.44249 9.84753 10.83635 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.012962 B = 0.003871 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.596967 B = 7230.778522 C = 8312.024360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.151 4.151 4 C 0.080 3.920 5 H 0.102 0.898 6 F -0.183 7.183 7 C 0.487 3.513 8 O -0.517 6.517 9 N -0.598 5.598 10 C 0.082 3.918 11 C 0.119 3.881 12 C -0.006 4.006 13 H 0.076 0.924 14 C -0.134 4.134 15 C 0.003 3.997 16 N -0.426 5.426 17 C 0.007 3.993 18 C 0.457 3.543 19 O -0.557 6.557 20 N -0.592 5.592 21 C -0.304 4.304 22 H 0.120 0.880 23 C 0.043 3.957 24 N -0.881 5.881 25 Si 0.876 3.124 26 H -0.271 1.271 27 H -0.275 1.275 28 H -0.269 1.269 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.050 0.950 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.096 0.904 42 H 0.076 0.924 43 H 0.091 0.909 44 H 0.067 0.933 45 H 0.057 0.943 46 H 0.084 0.916 47 H 0.369 0.631 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.506 8.673 -16.766 27.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.136 4.136 3 C -0.209 4.209 4 C 0.041 3.959 5 H 0.120 0.880 6 F -0.164 7.164 7 C 0.272 3.728 8 O -0.392 6.392 9 N -0.331 5.331 10 C -0.059 4.059 11 C -0.005 4.005 12 C -0.117 4.117 13 H 0.094 0.906 14 C -0.172 4.172 15 C -0.126 4.126 16 N -0.149 5.149 17 C -0.126 4.126 18 C 0.242 3.758 19 O -0.439 6.439 20 N -0.232 5.232 21 C -0.432 4.432 22 H 0.137 0.863 23 C -0.160 4.160 24 N -0.522 5.522 25 Si 0.703 3.297 26 H -0.196 1.196 27 H -0.201 1.201 28 H -0.195 1.195 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.111 0.889 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.100 0.900 41 H 0.115 0.885 42 H 0.095 0.905 43 H 0.110 0.890 44 H 0.085 0.915 45 H 0.075 0.925 46 H 0.102 0.898 47 H 0.202 0.798 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.727 8.792 -16.936 26.045 hybrid contribution -1.605 0.570 1.799 2.478 sum -19.332 9.363 -15.136 26.277 Atomic orbital electron populations 1.21853 0.93246 1.02463 1.03028 1.21730 0.97654 0.98187 0.96070 1.21831 1.01703 0.94481 1.02845 1.21623 0.93039 0.96532 0.84712 0.88016 1.92867 1.91925 1.79766 1.51847 1.20934 0.90438 0.81651 0.79759 1.90765 1.63871 1.40357 1.44174 1.47695 1.08595 1.29820 1.47000 1.21849 0.77668 1.04065 1.02355 1.21815 0.95269 0.89463 0.93909 1.24020 0.94393 0.95344 0.97945 0.90625 1.23175 1.00949 0.94647 0.98467 1.23763 0.96286 0.95527 0.97004 1.68741 1.31493 1.03493 1.11149 1.22538 0.98078 1.01520 0.90431 1.19463 0.88168 0.85587 0.82599 1.90557 1.50851 1.44985 1.57463 1.42234 1.22075 1.51194 1.07683 1.19407 0.97799 1.32055 0.93954 0.86269 1.25015 0.96611 0.97616 0.96779 1.69620 1.23468 1.44328 1.14740 0.86714 0.81236 0.80218 0.81551 1.19650 1.20055 1.19467 0.92122 0.91712 0.91583 0.88927 0.92082 0.91901 0.91499 0.93146 0.90666 0.88507 0.88727 0.89960 0.88518 0.90504 0.89007 0.91527 0.92468 0.89813 0.79844 0.91624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.11 37.16 0.34 -0.54 16 2 C -0.12 -0.90 2.45 -90.62 -0.22 -1.12 16 3 C -0.15 -1.37 8.82 37.16 0.33 -1.04 16 4 C 0.08 0.84 2.56 -27.89 -0.07 0.77 16 5 H 0.10 0.83 5.94 -51.93 -0.31 0.52 16 6 F -0.18 -2.46 15.66 2.25 0.04 -2.43 16 7 C 0.49 6.64 6.09 -10.99 -0.07 6.58 16 8 O -0.52 -9.38 16.06 5.55 0.09 -9.29 16 9 N -0.60 -7.16 2.58 -181.57 -0.47 -7.62 16 10 C 0.08 1.15 10.22 59.85 0.61 1.76 16 11 C 0.12 0.99 5.18 -4.04 -0.02 0.97 16 12 C -0.01 -0.06 3.13 -71.43 -0.22 -0.28 16 13 H 0.08 0.65 6.72 -51.93 -0.35 0.30 16 14 C -0.13 -1.05 8.00 -26.20 -0.21 -1.26 16 15 C 0.00 0.04 7.69 -7.54 -0.06 -0.02 16 16 N -0.43 -5.99 4.27 -237.95 -1.02 -7.01 16 17 C 0.01 0.11 5.26 -4.98 -0.03 0.08 16 18 C 0.46 10.44 7.83 -10.99 -0.09 10.36 16 19 O -0.56 -14.81 16.01 5.55 0.09 -14.72 16 20 N -0.59 -14.52 5.09 -10.97 -0.06 -14.58 16 21 C -0.30 -8.74 10.16 -14.93 -0.15 -8.89 16 22 H 0.12 3.89 7.39 -52.49 -0.39 3.51 16 23 C 0.04 1.20 5.50 -17.47 -0.10 1.10 16 24 N -0.88 -26.20 13.96 55.50 0.77 -25.42 16 25 Si 0.88 20.14 27.74 -169.99 -4.71 15.43 16 26 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.27 -5.82 6.52 56.52 0.37 -5.45 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.45 7.94 -51.93 -0.41 0.03 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.09 0.56 6.28 -51.93 -0.33 0.23 16 33 H 0.06 0.66 7.36 -51.93 -0.38 0.28 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.69 7.52 -51.94 -0.39 0.30 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 1.26 7.36 -51.93 -0.38 0.87 16 38 H 0.10 1.49 7.11 -51.93 -0.37 1.12 16 39 H 0.09 0.72 7.81 -51.93 -0.41 0.32 16 40 H 0.08 0.46 4.85 -51.93 -0.25 0.20 16 41 H 0.10 0.71 7.94 -51.93 -0.41 0.29 16 42 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.07 0.75 7.44 -51.93 -0.39 0.37 16 45 H 0.06 0.84 7.35 -51.93 -0.38 0.46 16 46 H 0.08 1.40 7.90 -51.93 -0.41 0.99 16 47 H 0.37 8.17 5.76 -40.82 -0.24 7.93 16 48 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 383.94 15.07 5.79 5.79 Total: -1.00 -35.80 383.94 -6.93 -42.73 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -7.50 Total: 8.66 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: 0.04 Total: 8.47 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: -0.76 Total: -54.63 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: 0.18 Total: -24.02 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.04 Total: -2.43 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -4.71 Total: 15.43 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.80 -6.93 -42.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691653486.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.495 kcal (2) G-P(sol) polarization free energy of solvation -35.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds