Wall clock time and date at job start Tue Mar 31 2020 05:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47491 * 2 1 4 4 F 1.39899 * 109.46938 * 239.99640 * 2 1 3 5 5 C 1.50703 * 109.46828 * 120.00166 * 2 1 3 6 6 O 1.21283 * 119.99488 * 249.99420 * 5 2 1 7 7 N 1.34777 * 120.00290 * 69.99860 * 5 2 1 8 8 C 1.46498 * 119.99828 * 180.27728 * 7 5 2 9 9 C 1.52996 * 109.47059 * 179.72339 * 8 7 5 10 10 C 1.53003 * 109.47301 * 179.97438 * 9 8 7 11 11 H 1.09000 * 110.27419 * 54.29951 * 10 9 8 12 12 C 1.54591 * 110.30668 * 292.20886 * 10 9 8 13 13 C 1.55104 * 102.84466 * 219.18440 * 12 10 9 14 14 N 1.48536 * 103.28343 * 37.30449 * 13 12 10 15 15 C 1.46903 * 110.99891 * 200.33389 * 14 13 12 16 16 C 1.50699 * 109.46879 * 307.39608 * 15 14 13 17 17 O 1.21288 * 120.00388 * 0.02562 * 16 15 14 18 18 N 1.34782 * 119.99567 * 180.02562 * 16 15 14 19 19 C 1.37100 * 119.99844 * 180.02562 * 18 16 15 20 20 H 1.08006 * 119.99706 * 359.97438 * 19 18 16 21 21 C 1.38946 * 120.00121 * 180.02562 * 19 18 16 22 22 N 1.31413 * 119.99652 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00442 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47209 * 89.99551 * 23 21 19 25 25 H 1.48497 * 109.47714 * 209.99971 * 23 21 19 26 26 H 1.48505 * 109.46857 * 330.00314 * 23 21 19 27 27 C 1.47903 * 105.82083 * 320.84922 * 14 13 12 28 28 H 1.09001 * 109.46983 * 300.00374 * 1 2 3 29 29 H 1.09007 * 109.47200 * 59.99854 * 1 2 3 30 30 H 1.08994 * 109.47574 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47391 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.47109 * 299.99708 * 3 2 1 33 33 H 1.09001 * 109.47313 * 59.99827 * 3 2 1 34 34 H 0.97001 * 119.99727 * 359.97438 * 7 5 2 35 35 H 1.09004 * 109.46963 * 299.72135 * 8 7 5 36 36 H 1.08994 * 109.47567 * 59.72287 * 8 7 5 37 37 H 1.09004 * 109.47066 * 299.99732 * 9 8 7 38 38 H 1.09000 * 109.47665 * 59.99541 * 9 8 7 39 39 H 1.08995 * 110.72674 * 337.48401 * 12 10 9 40 40 H 1.09003 * 110.72162 * 100.77407 * 12 10 9 41 41 H 1.09004 * 110.59491 * 278.88040 * 13 12 10 42 42 H 1.08995 * 110.82952 * 155.84884 * 13 12 10 43 43 H 1.08995 * 109.46996 * 67.39672 * 15 14 13 44 44 H 1.08997 * 109.46635 * 187.40178 * 15 14 13 45 45 H 0.96998 * 120.00380 * 0.02562 * 18 16 15 46 46 H 0.97006 * 120.00132 * 180.02562 * 22 21 19 47 47 H 1.09002 * 109.91187 * 265.97634 * 27 14 13 48 48 H 1.08996 * 110.07841 * 144.77217 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 9 1.9963 -0.6596 -1.1422 5 6 2.0323 -0.7105 1.2305 6 8 2.5731 -0.0817 2.1154 7 7 1.8805 -2.0445 1.3476 8 6 2.3633 -2.7342 2.5465 9 6 2.0632 -4.2299 2.4301 10 6 2.5680 -4.9504 3.6819 11 1 2.1504 -4.4896 4.5771 12 6 4.1128 -4.9188 3.7329 13 6 4.4691 -6.3309 4.2663 14 7 3.4626 -7.2065 3.6132 15 6 3.3199 -8.4762 4.3381 16 6 4.6764 -9.1078 4.5168 17 8 5.6649 -8.5544 4.0834 18 7 4.7912 -10.2876 5.1582 19 6 6.0254 -10.8619 5.3213 20 1 6.9056 -10.3691 4.9354 21 6 6.1438 -12.0785 5.9821 22 7 5.0727 -12.6782 6.4512 23 14 7.8251 -12.8614 6.2037 24 1 8.4251 -12.3930 7.4789 25 1 7.6827 -14.3391 6.2370 26 1 8.7045 -12.4742 5.0714 27 6 2.1956 -6.4435 3.6260 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6768 1.9563 -0.8901 33 1 1.6768 1.9563 0.8900 34 1 1.4476 -2.5473 0.6400 35 1 3.4389 -2.5859 2.6426 36 1 1.8609 -2.3302 3.4253 37 1 0.9876 -4.3783 2.3340 38 1 2.5656 -4.6341 1.5512 39 1 4.5286 -4.7667 2.7369 40 1 4.4603 -4.1466 4.4192 41 1 4.3658 -6.3685 5.3507 42 1 5.4780 -6.6150 3.9672 43 1 2.8748 -8.2887 5.3152 44 1 2.6780 -9.1490 3.7694 45 1 4.0007 -10.7304 5.5045 46 1 5.1553 -13.5274 6.9129 47 1 1.6088 -6.7131 4.5042 48 1 1.6251 -6.6503 2.7205 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691869134.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:00 Heat of formation + Delta-G solvation = -127.306319 kcal Electronic energy + Delta-G solvation = -27739.152021 eV Core-core repulsion = 23550.009270 eV Total energy + Delta-G solvation = -4189.142750 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.190 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.35825 -40.14785 -39.33030 -37.74470 -35.79095 -34.15799 -33.99751 -32.95705 -31.28812 -29.96235 -28.36677 -27.92181 -26.45235 -24.56131 -23.85028 -22.54690 -21.05129 -20.67928 -19.83591 -19.22504 -18.30837 -17.87119 -16.75000 -16.49084 -16.13071 -15.75672 -15.46127 -15.35750 -15.01152 -14.87836 -14.48321 -14.26097 -14.00997 -13.75243 -13.64242 -13.45904 -13.04459 -12.89714 -12.75481 -12.61022 -12.56571 -12.49300 -12.34792 -12.10525 -11.71786 -11.54003 -11.52678 -11.36789 -11.16436 -10.92940 -10.87254 -10.70266 -10.48107 -10.33387 -10.22841 -10.12420 -9.49544 -9.48748 -8.35424 -8.01121 -7.88241 -6.42879 -3.83713 2.02807 2.57533 3.17063 3.25957 3.31927 3.81987 3.88815 3.91123 4.09384 4.15581 4.26409 4.32406 4.42740 4.66109 4.71670 4.91154 4.96008 4.98404 5.10220 5.13863 5.15507 5.24320 5.34118 5.39204 5.44804 5.45981 5.51576 5.61759 5.62671 5.70253 5.75827 5.82390 5.94645 5.96762 6.02412 6.06222 6.16481 6.27291 6.38229 6.72960 6.97641 7.27295 7.34119 7.54333 7.65743 8.05113 8.60581 9.16887 9.52719 10.04526 10.74780 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.037323 B = 0.001682 C = 0.001660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.031320 B =16646.109822 C =16867.233599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.102 3.898 3 C -0.159 4.159 4 F -0.195 7.195 5 C 0.498 3.502 6 O -0.523 6.523 7 N -0.718 5.718 8 C 0.116 3.884 9 C -0.120 4.120 10 C -0.094 4.094 11 H 0.075 0.925 12 C -0.124 4.124 13 C 0.037 3.963 14 N -0.496 5.496 15 C 0.036 3.964 16 C 0.442 3.558 17 O -0.581 6.581 18 N -0.562 5.562 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.901 5.901 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.269 1.269 27 C 0.038 3.962 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.404 0.596 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.034 0.966 42 H 0.118 0.882 43 H 0.048 0.952 44 H 0.089 0.911 45 H 0.392 0.608 46 H 0.271 0.729 47 H 0.042 0.958 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.888 22.750 -10.223 28.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.080 3.920 3 C -0.217 4.217 4 F -0.176 7.176 5 C 0.282 3.718 6 O -0.399 6.399 7 N -0.370 5.370 8 C -0.007 4.007 9 C -0.158 4.158 10 C -0.114 4.114 11 H 0.093 0.907 12 C -0.162 4.162 13 C -0.090 4.090 14 N -0.220 5.220 15 C -0.095 4.095 16 C 0.228 3.772 17 O -0.465 6.465 18 N -0.198 5.198 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.090 4.090 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.239 0.761 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.052 0.948 42 H 0.135 0.865 43 H 0.066 0.934 44 H 0.107 0.893 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.060 0.940 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.669 23.200 -10.306 28.372 hybrid contribution -0.286 -1.050 0.874 1.396 sum -12.956 22.149 -9.432 27.339 Atomic orbital electron populations 1.22390 0.91392 1.04365 1.04823 1.21223 0.96433 0.93655 0.80683 1.22179 1.03279 0.92166 1.04029 1.92929 1.90259 1.82636 1.51754 1.20811 0.79604 0.82833 0.88602 1.90749 1.41767 1.65887 1.41452 1.46031 1.60848 1.07527 1.22568 1.21524 1.00447 0.91921 0.86803 1.21869 1.01590 0.92922 0.99404 1.21924 0.96966 0.95219 0.97268 0.90669 1.22722 0.93854 0.97696 1.01909 1.23506 0.99800 0.89798 0.95865 1.64594 1.04911 1.02526 1.49984 1.22096 0.97608 0.92835 0.97001 1.19727 0.89873 0.83558 0.84088 1.90435 1.39074 1.63300 1.53714 1.41857 1.09937 1.18342 1.49701 1.19707 0.86299 1.02837 1.34048 0.87879 1.25266 0.99117 0.96722 0.96831 1.69615 1.28604 1.17804 1.38242 0.85851 0.81608 0.77924 0.78868 1.20434 1.20914 1.19396 1.22977 0.92952 0.92061 1.01021 0.89899 0.89878 0.90793 0.90707 0.90580 0.89678 0.76120 0.90788 0.91255 0.91266 0.90403 0.90750 0.91417 0.94778 0.86454 0.93431 0.89310 0.77461 0.91867 0.93984 0.90493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.77 8.91 37.16 0.33 -0.44 16 2 C 0.10 0.73 1.54 -91.77 -0.14 0.59 16 3 C -0.16 -1.04 8.28 37.15 0.31 -0.73 16 4 F -0.20 -1.67 16.74 2.25 0.04 -1.63 16 5 C 0.50 4.82 6.79 -10.98 -0.07 4.74 16 6 O -0.52 -6.86 15.98 5.55 0.09 -6.77 16 7 N -0.72 -5.78 5.53 -60.30 -0.33 -6.11 16 8 C 0.12 1.01 5.53 -4.04 -0.02 0.99 16 9 C -0.12 -0.98 4.48 -26.73 -0.12 -1.09 16 10 C -0.09 -0.98 3.01 -89.26 -0.27 -1.25 16 11 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 12 C -0.12 -1.56 5.81 -24.78 -0.14 -1.70 16 13 C 0.04 0.63 5.31 -1.81 -0.01 0.62 16 14 N -0.50 -8.29 5.26 -231.78 -1.22 -9.51 16 15 C 0.04 0.66 5.52 -4.97 -0.03 0.63 16 16 C 0.44 10.41 7.49 -10.98 -0.08 10.33 16 17 O -0.58 -15.38 13.09 5.55 0.07 -15.31 16 18 N -0.56 -14.25 5.29 -10.96 -0.06 -14.31 16 19 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 20 H 0.10 3.00 7.16 -52.48 -0.38 2.63 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.49 13.05 55.50 0.72 -23.76 16 23 Si 0.93 21.04 29.55 -169.99 -5.02 16.02 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 27 C 0.04 0.47 6.36 -2.75 -0.02 0.46 16 28 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.54 7.99 -51.93 -0.41 0.13 16 34 H 0.40 2.40 8.44 -40.82 -0.34 2.05 16 35 H 0.07 0.76 7.52 -51.93 -0.39 0.37 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.69 8.03 -51.93 -0.42 0.27 16 39 H 0.07 0.95 7.79 -51.93 -0.40 0.54 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.03 0.59 8.02 -51.93 -0.42 0.17 16 42 H 0.12 2.39 5.96 -51.93 -0.31 2.08 16 43 H 0.05 0.79 7.81 -51.93 -0.41 0.39 16 44 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 45 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 46 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 47 H 0.04 0.50 7.57 -51.93 -0.39 0.10 16 48 H 0.08 0.86 7.68 -51.93 -0.40 0.46 16 LS Contribution 391.61 15.07 5.90 5.90 Total: -1.00 -32.75 391.61 -8.27 -41.02 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -7.96 Total: 9.28 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: -0.51 Total: 5.17 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: -0.89 Total: -53.69 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: 0.16 Total: -22.08 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.75 -8.27 -41.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691869134.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.287 kcal (2) G-P(sol) polarization free energy of solvation -32.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds