Wall clock time and date at job start Tue Mar 31 2020 05:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42896 * 114.00244 * 2 1 4 4 C 1.53000 * 109.47625 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.46713 * 304.99840 * 4 3 2 6 6 O 1.42898 * 109.46755 * 64.99540 * 4 3 2 7 7 C 1.42895 * 114.00300 * 270.00035 * 6 4 3 8 8 C 1.50701 * 109.47319 * 185.00191 * 4 3 2 9 9 O 1.21284 * 119.99463 * 244.99809 * 8 4 3 10 10 N 1.34775 * 119.99968 * 64.99576 * 8 4 3 11 11 C 1.46492 * 119.99947 * 0.02562 * 10 8 4 12 12 C 1.46503 * 119.99286 * 180.02562 * 10 8 4 13 13 C 1.53003 * 109.46814 * 269.99588 * 12 10 8 14 14 N 1.46900 * 109.46690 * 180.02562 * 13 12 10 15 15 C 1.46898 * 111.00268 * 294.30469 * 14 13 12 16 16 C 1.53238 * 109.34000 * 172.74898 * 15 14 13 17 17 N 1.47079 * 108.52550 * 53.83223 * 16 15 14 18 18 C 1.36931 * 120.88662 * 128.83594 * 17 16 15 19 19 H 1.08004 * 120.00114 * 206.56339 * 18 17 16 20 20 C 1.38815 * 119.99893 * 26.55820 * 18 17 16 21 21 N 1.31625 * 119.99986 * 17.02880 * 20 18 17 22 22 Si 1.86797 * 120.00083 * 197.03050 * 20 18 17 23 23 H 1.48499 * 109.46972 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47483 * 120.00301 * 22 20 18 25 25 H 1.48498 * 109.47127 * 240.00060 * 22 20 18 26 26 C 1.47087 * 118.23224 * 308.81392 * 17 16 15 27 27 C 1.46903 * 110.99810 * 170.00476 * 14 13 12 28 28 H 1.09006 * 109.46932 * 59.99969 * 1 2 3 29 29 H 1.08998 * 109.46867 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46718 * 300.00124 * 1 2 3 31 31 H 1.09000 * 109.47047 * 59.99470 * 3 2 1 32 32 H 1.09001 * 109.46893 * 300.00167 * 3 2 1 33 33 H 1.08998 * 109.46910 * 60.00163 * 7 6 4 34 34 H 1.09006 * 109.47284 * 180.02562 * 7 6 4 35 35 H 1.09004 * 109.47538 * 300.00807 * 7 6 4 36 36 H 1.09005 * 109.46917 * 269.99164 * 11 10 8 37 37 H 1.08998 * 109.47583 * 30.00087 * 11 10 8 38 38 H 1.09010 * 109.46640 * 150.00054 * 11 10 8 39 39 H 1.08996 * 109.47660 * 29.99886 * 12 10 8 40 40 H 1.09001 * 109.46839 * 150.00638 * 12 10 8 41 41 H 1.08992 * 109.47558 * 300.00152 * 13 12 10 42 42 H 1.08999 * 109.46828 * 60.01349 * 13 12 10 43 43 H 1.09005 * 109.49536 * 292.70710 * 15 14 13 44 44 H 1.09000 * 109.49239 * 52.78993 * 15 14 13 45 45 H 1.08995 * 109.62854 * 294.11694 * 16 15 14 46 46 H 1.09003 * 109.62832 * 173.54106 * 16 15 14 47 47 H 0.96994 * 119.99733 * 180.02562 * 21 20 18 48 48 H 1.08997 * 109.62864 * 291.47163 * 26 17 16 49 49 H 1.08997 * 109.78253 * 170.98825 * 26 17 16 50 50 H 1.09000 * 109.49411 * 307.21416 * 27 14 13 51 51 H 1.08995 * 109.49591 * 67.29443 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.8515 0.5682 0.8410 6 8 3.9648 0.5796 -1.2219 7 6 4.0463 -0.8460 -1.1671 8 6 4.1481 2.5560 0.1232 9 8 4.8063 3.0106 -0.7884 10 7 3.9644 3.2771 1.2469 11 6 3.1698 2.7276 2.3481 12 6 4.5595 4.6104 1.3670 13 6 5.9574 4.4918 1.9774 14 7 6.5539 5.8288 2.0984 15 6 6.7915 6.4209 0.7752 16 6 7.2416 7.8760 0.9438 17 7 8.3960 7.9055 1.8546 18 6 9.5478 8.5604 1.5087 19 1 10.4931 8.2484 1.9277 20 6 9.5004 9.6252 0.6195 21 7 8.3545 10.2219 0.3677 22 14 11.0628 10.2114 -0.2199 23 1 12.2082 9.3806 0.2306 24 1 10.9101 10.0884 -1.6919 25 1 11.3123 11.6316 0.1348 26 6 8.2803 7.2133 3.1473 27 6 7.7894 5.7842 2.8919 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.6886 1.8463 0.8899 32 1 1.6886 1.8463 -0.8900 33 1 3.0646 -1.2572 -0.9322 34 1 4.3794 -1.2283 -2.1321 35 1 4.7575 -1.1399 -0.3951 36 1 2.1243 3.0066 2.2162 37 1 3.2581 1.6412 2.3533 38 1 3.5356 3.1264 3.2944 39 1 4.6317 5.0664 0.3796 40 1 3.9342 5.2308 2.0090 41 1 5.8853 4.0359 2.9648 42 1 6.5828 3.8714 1.3354 43 1 7.5686 5.8574 0.2587 44 1 5.8710 6.3902 0.1923 45 1 6.4271 8.4646 1.3657 46 1 7.5290 8.2849 -0.0249 47 1 8.3213 10.9657 -0.2540 48 1 7.5656 7.7382 3.7811 49 1 9.2529 7.1840 3.6384 50 1 7.5925 5.2917 3.8441 51 1 8.5525 5.2296 2.3460 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691940490.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:40 Heat of formation + Delta-G solvation = -72.135429 kcal Electronic energy + Delta-G solvation = -29524.914643 eV Core-core repulsion = 25461.624587 eV Total energy + Delta-G solvation = -4063.290056 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.58363 -38.65678 -38.00158 -37.28574 -35.89805 -34.36990 -31.97575 -31.06341 -29.87496 -29.05374 -27.51312 -27.05558 -26.39789 -25.72631 -23.97020 -23.00793 -22.50302 -21.41279 -19.57505 -19.04944 -17.87746 -17.33573 -16.94124 -16.75869 -16.21378 -16.03548 -15.81807 -15.23209 -14.87053 -14.71290 -14.42568 -14.33379 -14.15338 -13.69435 -13.53297 -13.46792 -13.36918 -13.22669 -13.03218 -12.75928 -12.47403 -12.36783 -12.24232 -11.89955 -11.78227 -11.50449 -11.37404 -11.02969 -10.93439 -10.70395 -10.37817 -10.26922 -10.23249 -10.09135 -10.00089 -9.73647 -9.70226 -9.55326 -8.88887 -8.46016 -7.80423 -6.62003 -5.73431 -3.14326 2.26974 2.45357 3.25814 3.41194 3.48806 3.50986 3.56873 4.28344 4.37249 4.47186 4.51219 4.55773 4.71874 4.82212 4.88421 4.91344 4.99144 5.07077 5.08243 5.19801 5.21769 5.30038 5.32401 5.37028 5.43988 5.48020 5.54649 5.60917 5.84591 5.96776 5.98977 6.00699 6.17671 6.26193 6.36786 6.43782 6.55815 6.59217 6.72158 6.75343 6.96013 7.10881 7.30308 7.62310 7.69348 7.75266 7.86801 7.95504 8.48376 9.26069 9.89610 10.48005 11.35415 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.022785 B = 0.002292 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.578362 B =12214.616278 C =12630.923162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.037 3.963 4 C 0.079 3.921 5 H 0.093 0.907 6 O -0.355 6.355 7 C 0.029 3.971 8 C 0.514 3.486 9 O -0.502 6.502 10 N -0.614 5.614 11 C 0.071 3.929 12 C 0.118 3.882 13 C 0.042 3.958 14 N -0.530 5.530 15 C 0.033 3.967 16 C 0.178 3.822 17 N -0.596 5.596 18 C -0.250 4.250 19 H 0.066 0.934 20 C 0.000 4.000 21 N -0.903 5.903 22 Si 0.902 3.098 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.291 1.291 26 C 0.150 3.850 27 C 0.046 3.954 28 H 0.043 0.957 29 H 0.088 0.912 30 H 0.043 0.957 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.087 0.913 35 H 0.039 0.961 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.066 0.934 42 H 0.030 0.970 43 H 0.026 0.974 44 H 0.063 0.937 45 H 0.026 0.974 46 H 0.088 0.912 47 H 0.253 0.747 48 H 0.025 0.975 49 H 0.055 0.945 50 H 0.060 0.940 51 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.337 -22.440 4.051 28.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C -0.040 4.040 4 C 0.017 3.983 5 H 0.111 0.889 6 O -0.272 6.272 7 C -0.068 4.068 8 C 0.299 3.701 9 O -0.375 6.375 10 N -0.350 5.350 11 C -0.072 4.072 12 C -0.004 4.004 13 C -0.088 4.088 14 N -0.256 5.256 15 C -0.096 4.096 16 C 0.052 3.948 17 N -0.319 5.319 18 C -0.380 4.380 19 H 0.084 0.916 20 C -0.198 4.198 21 N -0.548 5.548 22 Si 0.732 3.268 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.218 1.218 26 C 0.023 3.977 27 C -0.084 4.084 28 H 0.062 0.938 29 H 0.106 0.894 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.106 0.894 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.085 0.915 42 H 0.049 0.951 43 H 0.045 0.955 44 H 0.081 0.919 45 H 0.044 0.956 46 H 0.106 0.894 47 H 0.063 0.937 48 H 0.043 0.957 49 H 0.073 0.927 50 H 0.078 0.922 51 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -17.151 -21.799 3.511 27.958 hybrid contribution 0.975 -0.255 -0.545 1.146 sum -16.176 -22.053 2.965 27.510 Atomic orbital electron populations 1.22782 0.80483 1.02962 1.00315 1.87839 1.20210 1.27100 1.95522 1.23212 0.92529 0.85879 1.02377 1.21885 0.92531 0.93677 0.90229 0.88901 1.88030 1.87763 1.20250 1.31178 1.22956 1.01095 0.80232 1.02476 1.20103 0.81392 0.86084 0.82473 1.90784 1.38320 1.69964 1.38402 1.47838 1.52637 1.18411 1.16089 1.22009 0.95404 0.99347 0.90465 1.21575 0.94025 0.81484 1.03283 1.22363 0.95015 0.91658 0.99752 1.61948 1.27598 1.18731 1.17288 1.22966 0.98816 0.99640 0.88189 1.20869 0.88639 0.88869 0.96374 1.44131 1.13661 1.60850 1.13273 1.19229 0.85700 1.08647 1.24395 0.91650 1.25024 0.96761 0.95986 1.02065 1.70039 1.24214 1.23039 1.37489 0.86228 0.82989 0.78148 0.79451 1.20345 1.21560 1.21756 1.20960 0.97859 0.89706 0.89177 1.22611 0.89771 0.99966 0.96013 0.93794 0.89390 0.93823 0.91073 0.91650 0.92243 0.89443 0.94188 0.92103 0.91093 0.90089 0.89244 0.89275 0.91529 0.95123 0.95548 0.91880 0.95576 0.89353 0.93699 0.95692 0.92659 0.92164 0.95454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -3.12 8.83 -40.09 -0.35 -3.47 16 3 C 0.04 0.31 5.34 37.16 0.20 0.51 16 4 C 0.08 0.83 2.10 -27.88 -0.06 0.77 16 5 H 0.09 0.78 6.77 -51.93 -0.35 0.43 16 6 O -0.35 -4.55 9.88 -59.70 -0.59 -5.14 16 7 C 0.03 0.26 10.71 101.05 1.08 1.34 16 8 C 0.51 6.86 7.10 -10.99 -0.08 6.78 16 9 O -0.50 -9.22 16.09 -14.31 -0.23 -9.45 16 10 N -0.61 -6.68 2.87 -181.57 -0.52 -7.20 16 11 C 0.07 0.45 8.92 59.84 0.53 0.98 16 12 C 0.12 1.55 5.34 -4.04 -0.02 1.53 16 13 C 0.04 0.62 5.29 -3.82 -0.02 0.60 16 14 N -0.53 -9.68 4.63 -234.32 -1.08 -10.77 16 15 C 0.03 0.69 5.46 -3.70 -0.02 0.67 16 16 C 0.18 4.47 5.42 -3.60 -0.02 4.45 16 17 N -0.60 -15.57 3.04 -172.01 -0.52 -16.09 16 18 C -0.25 -7.08 9.63 -15.06 -0.15 -7.22 16 19 H 0.07 1.82 7.88 -52.48 -0.41 1.40 16 20 C 0.00 0.00 4.94 -17.43 -0.09 -0.09 16 21 N -0.90 -26.82 11.15 55.49 0.62 -26.20 16 22 Si 0.90 22.27 29.59 -169.99 -5.03 17.25 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 C 0.15 3.26 6.69 -3.60 -0.02 3.23 16 27 C 0.05 0.85 5.62 -3.70 -0.02 0.83 16 28 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.07 0.44 5.07 -51.93 -0.26 0.18 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.49 6.40 -51.93 -0.33 0.16 16 34 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.04 0.31 8.09 -51.93 -0.42 -0.11 16 36 H 0.06 0.29 6.95 -51.93 -0.36 -0.07 16 37 H 0.07 0.35 6.11 -51.93 -0.32 0.03 16 38 H 0.08 0.45 8.07 -51.92 -0.42 0.03 16 39 H 0.09 1.41 5.68 -51.93 -0.30 1.11 16 40 H 0.09 1.04 8.07 -51.93 -0.42 0.62 16 41 H 0.07 0.86 7.97 -51.93 -0.41 0.45 16 42 H 0.03 0.52 8.12 -51.93 -0.42 0.10 16 43 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 1.22 6.16 -51.93 -0.32 0.90 16 45 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.09 2.46 6.12 -51.93 -0.32 2.14 16 47 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 48 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.05 1.15 7.96 -51.93 -0.41 0.74 16 50 H 0.06 0.94 7.99 -51.93 -0.41 0.52 16 51 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 395.96 15.07 5.97 5.97 Total: -1.00 -35.07 395.96 -8.15 -43.22 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -8.83 Total: -3.76 kcal Atomic # 6 Polarization: 13.22 SS G_CDS: 2.43 Total: 15.65 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: -1.51 Total: -60.26 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -1.17 Total: -18.07 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.03 Total: 17.25 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.07 -8.15 -43.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691940490.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.914 kcal (2) G-P(sol) polarization free energy of solvation -35.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds