Wall clock time and date at job start Tue Mar 31 2020 05:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 113.99914 * 2 1 4 4 C 1.53004 * 109.47100 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47233 * 54.99592 * 4 3 2 6 6 O 1.42901 * 109.46808 * 294.99855 * 4 3 2 7 7 C 1.42901 * 113.99716 * 150.00173 * 6 4 3 8 8 C 1.50695 * 109.47082 * 174.99939 * 4 3 2 9 9 O 1.21284 * 120.00221 * 115.00036 * 8 4 3 10 10 N 1.34779 * 120.00286 * 295.00076 * 8 4 3 11 11 C 1.46499 * 119.99671 * 359.97438 * 10 8 4 12 12 C 1.46501 * 120.00109 * 180.02562 * 10 8 4 13 13 C 1.53004 * 109.47060 * 90.00047 * 12 10 8 14 14 N 1.46903 * 109.46859 * 179.97438 * 13 12 10 15 15 C 1.46895 * 111.00057 * 294.29928 * 14 13 12 16 16 C 1.53235 * 109.34105 * 172.74485 * 15 14 13 17 17 N 1.47083 * 108.51921 * 53.83032 * 16 15 14 18 18 C 1.36936 * 120.87945 * 128.83768 * 17 16 15 19 19 H 1.08006 * 119.99962 * 206.56446 * 18 17 16 20 20 C 1.38803 * 120.00426 * 26.56392 * 18 17 16 21 21 N 1.31626 * 119.99861 * 17.01745 * 20 18 17 22 22 Si 1.86798 * 120.00448 * 197.01750 * 20 18 17 23 23 H 1.48499 * 109.47330 * 89.99733 * 22 20 18 24 24 H 1.48500 * 109.47567 * 210.00047 * 22 20 18 25 25 H 1.48506 * 109.47081 * 330.00013 * 22 20 18 26 26 C 1.47082 * 118.23537 * 308.81307 * 17 16 15 27 27 C 1.46895 * 110.99811 * 169.99558 * 14 13 12 28 28 H 1.08997 * 109.46944 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47070 * 299.99927 * 1 2 3 30 30 H 1.08993 * 109.47260 * 59.99875 * 1 2 3 31 31 H 1.09001 * 109.47494 * 60.00273 * 3 2 1 32 32 H 1.08995 * 109.47297 * 300.00316 * 3 2 1 33 33 H 1.09003 * 109.47068 * 299.99379 * 7 6 4 34 34 H 1.09001 * 109.47282 * 180.02562 * 7 6 4 35 35 H 1.08998 * 109.47359 * 59.99837 * 7 6 4 36 36 H 1.09002 * 109.46769 * 90.00097 * 11 10 8 37 37 H 1.09003 * 109.47458 * 210.00438 * 11 10 8 38 38 H 1.09001 * 109.47587 * 330.00797 * 11 10 8 39 39 H 1.08999 * 109.46666 * 209.99225 * 12 10 8 40 40 H 1.08997 * 109.47417 * 329.99721 * 12 10 8 41 41 H 1.08999 * 109.46710 * 299.99151 * 13 12 10 42 42 H 1.08997 * 109.47272 * 59.99585 * 13 12 10 43 43 H 1.08999 * 109.49220 * 292.71101 * 15 14 13 44 44 H 1.09001 * 109.49392 * 52.78913 * 15 14 13 45 45 H 1.09000 * 109.63035 * 294.12269 * 16 15 14 46 46 H 1.08999 * 109.62937 * 173.53662 * 16 15 14 47 47 H 0.97004 * 119.99671 * 180.02562 * 21 20 18 48 48 H 1.08998 * 109.62898 * 291.47408 * 26 17 16 49 49 H 1.09007 * 109.78241 * 170.98842 * 26 17 16 50 50 H 1.09004 * 109.49584 * 307.21379 * 27 14 13 51 51 H 1.09002 * 109.49487 * 67.29469 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8508 0.5684 -0.8427 6 8 3.9658 0.5792 1.2202 7 6 5.1690 -0.1820 1.0988 8 6 4.1479 2.5560 -0.1245 9 8 4.8069 3.0104 0.7867 10 7 3.9634 3.2775 -1.2478 11 6 3.1679 2.7284 -2.3486 12 6 4.5592 4.6104 -1.3684 13 6 5.9564 4.4910 -1.9806 14 7 6.5536 5.8277 -2.1020 15 6 5.8110 6.6504 -3.0661 16 6 6.3496 8.0846 -3.0303 17 7 7.8049 8.0424 -3.2396 18 6 8.4012 8.8273 -4.1901 19 1 9.3335 8.5177 -4.6389 20 6 7.8076 10.0210 -4.5768 21 7 6.8773 10.5678 -3.8231 22 14 8.3290 10.8515 -6.1667 23 1 7.4842 10.3573 -7.2835 24 1 8.1646 12.3214 -6.0345 25 1 9.7530 10.5358 -6.4461 26 6 8.6025 7.1351 -2.4006 27 6 7.9751 5.7384 -2.4612 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8464 -0.8899 33 1 5.0198 -0.9849 0.3768 34 1 5.4283 -0.6088 2.0677 35 1 5.9766 0.4665 0.7592 36 1 2.1225 3.0073 -2.2158 37 1 3.5329 3.1274 -3.2951 38 1 3.2561 1.6420 -2.3542 39 1 3.9336 5.2314 -2.0095 40 1 4.6329 5.0662 -0.3810 41 1 6.5820 3.8701 -1.3394 42 1 5.8827 4.0352 -2.9679 43 1 5.9366 6.2395 -4.0678 44 1 4.7531 6.6527 -2.8035 45 1 6.1320 8.5334 -2.0611 46 1 5.8827 8.6709 -3.8217 47 1 6.4622 11.4018 -4.0935 48 1 8.6014 7.4927 -1.3710 49 1 9.6263 7.0932 -2.7726 50 1 8.4868 5.0791 -1.7600 51 1 8.0708 5.3402 -3.4714 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691940491.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:44 Heat of formation + Delta-G solvation = -72.983089 kcal Electronic energy + Delta-G solvation = -29465.695761 eV Core-core repulsion = 25402.368948 eV Total energy + Delta-G solvation = -4063.326813 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.62928 -38.53526 -38.03278 -37.37151 -35.89165 -34.40496 -32.01714 -31.13048 -29.93306 -29.13809 -27.30394 -26.99404 -26.56221 -25.71261 -24.00444 -23.11540 -22.51848 -21.40747 -19.62350 -19.09876 -17.92793 -17.34761 -16.96094 -16.72565 -16.17169 -16.00531 -15.76456 -15.30804 -15.00803 -14.75542 -14.48181 -14.37239 -14.11350 -13.67721 -13.56597 -13.50603 -13.43637 -13.24872 -13.02977 -12.79432 -12.54843 -12.23998 -12.17233 -11.88935 -11.70273 -11.42638 -11.37931 -11.07140 -10.97576 -10.78656 -10.75492 -10.42147 -10.29725 -10.12220 -10.04237 -9.75212 -9.64368 -9.51625 -8.90555 -8.50404 -7.82908 -6.66383 -5.77756 -3.18909 2.23075 2.56477 3.31975 3.37187 3.40914 3.44089 3.45590 4.21310 4.42556 4.43832 4.50173 4.51755 4.73639 4.83293 4.91701 4.94546 4.97648 5.04920 5.07573 5.17149 5.22244 5.26925 5.28387 5.36386 5.39473 5.43501 5.48468 5.56900 5.78186 5.89500 5.96982 6.06024 6.13194 6.20516 6.27595 6.35635 6.53369 6.61072 6.69108 6.69837 6.95520 7.09385 7.25097 7.59167 7.64265 7.70312 7.82021 7.92152 8.43745 9.21659 9.84967 10.43816 11.31068 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.025271 B = 0.002239 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.739403 B =12505.355559 C =13161.474425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.063 3.937 4 C 0.078 3.922 5 H 0.094 0.906 6 O -0.351 6.351 7 C 0.030 3.970 8 C 0.491 3.509 9 O -0.508 6.508 10 N -0.613 5.613 11 C 0.069 3.931 12 C 0.117 3.883 13 C 0.045 3.955 14 N -0.530 5.530 15 C 0.033 3.967 16 C 0.178 3.822 17 N -0.596 5.596 18 C -0.251 4.251 19 H 0.066 0.934 20 C 0.000 4.000 21 N -0.903 5.903 22 Si 0.903 3.097 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.279 1.279 26 C 0.149 3.851 27 C 0.047 3.953 28 H 0.088 0.912 29 H 0.044 0.956 30 H 0.043 0.957 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.043 0.957 34 H 0.091 0.909 35 H 0.045 0.955 36 H 0.062 0.938 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.095 0.905 41 H 0.069 0.931 42 H 0.025 0.975 43 H 0.024 0.976 44 H 0.061 0.939 45 H 0.027 0.973 46 H 0.088 0.912 47 H 0.254 0.746 48 H 0.026 0.974 49 H 0.056 0.944 50 H 0.061 0.939 51 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.486 -22.576 4.293 26.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C -0.014 4.014 4 C 0.016 3.984 5 H 0.112 0.888 6 O -0.268 6.268 7 C -0.066 4.066 8 C 0.277 3.723 9 O -0.382 6.382 10 N -0.350 5.350 11 C -0.074 4.074 12 C -0.005 4.005 13 C -0.085 4.085 14 N -0.255 5.255 15 C -0.096 4.096 16 C 0.052 3.948 17 N -0.319 5.319 18 C -0.380 4.380 19 H 0.084 0.916 20 C -0.198 4.198 21 N -0.548 5.548 22 Si 0.733 3.267 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.205 1.205 26 C 0.022 3.978 27 C -0.082 4.082 28 H 0.107 0.893 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.062 0.938 34 H 0.109 0.891 35 H 0.064 0.936 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.113 0.887 41 H 0.087 0.913 42 H 0.043 0.957 43 H 0.043 0.957 44 H 0.079 0.921 45 H 0.045 0.955 46 H 0.107 0.893 47 H 0.064 0.936 48 H 0.044 0.956 49 H 0.074 0.926 50 H 0.079 0.921 51 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -12.205 -22.078 5.407 25.800 hybrid contribution 0.216 0.216 -1.983 2.007 sum -11.989 -21.861 3.423 25.167 Atomic orbital electron populations 1.22782 0.80477 1.03042 1.00249 1.87897 1.20031 1.26744 1.95489 1.22656 0.90428 0.86007 1.02344 1.21972 0.94076 0.92112 0.90249 0.88826 1.88014 1.42221 1.66997 1.29532 1.22874 0.86486 0.94294 1.02955 1.21098 0.81649 0.87273 0.82314 1.90764 1.38827 1.70229 1.38387 1.47966 1.52287 1.18417 1.16292 1.22017 0.95460 0.99430 0.90456 1.21572 0.93635 0.81726 1.03603 1.22352 0.95605 0.91935 0.98597 1.61870 1.02932 1.11045 1.49673 1.22974 0.96608 0.97946 0.92121 1.20866 0.83877 0.89467 1.00623 1.44129 1.01872 1.46200 1.39706 1.19209 1.07130 0.98979 1.12694 0.91632 1.25030 0.99883 0.95864 0.99070 1.70039 1.29739 1.18948 1.36089 0.86275 0.78256 0.78497 0.83654 1.21553 1.21744 1.20487 1.20978 0.94013 0.88135 0.94687 1.22599 0.87979 0.99916 0.97708 0.89335 0.93773 0.93870 0.91625 0.90639 0.93808 0.89061 0.93618 0.92003 0.90267 0.90977 0.90014 0.88693 0.91254 0.95667 0.95748 0.92097 0.95492 0.89348 0.93636 0.95558 0.92599 0.92059 0.95516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.38 -3.44 10.67 -40.09 -0.43 -3.87 16 3 C 0.06 0.54 5.34 37.16 0.20 0.73 16 4 C 0.08 0.80 1.99 -27.88 -0.06 0.74 16 5 H 0.09 0.77 6.77 -51.93 -0.35 0.42 16 6 O -0.35 -4.33 9.85 -59.70 -0.59 -4.91 16 7 C 0.03 0.29 10.81 101.05 1.09 1.38 16 8 C 0.49 6.21 7.05 -10.99 -0.08 6.13 16 9 O -0.51 -8.68 16.09 -14.31 -0.23 -8.91 16 10 N -0.61 -6.63 2.87 -181.57 -0.52 -7.15 16 11 C 0.07 0.47 8.92 59.85 0.53 1.00 16 12 C 0.12 1.53 5.34 -4.04 -0.02 1.51 16 13 C 0.04 0.66 5.29 -3.82 -0.02 0.64 16 14 N -0.53 -9.62 4.63 -234.32 -1.08 -10.70 16 15 C 0.03 0.62 5.46 -3.71 -0.02 0.60 16 16 C 0.18 4.29 5.42 -3.60 -0.02 4.27 16 17 N -0.60 -15.27 3.04 -172.01 -0.52 -15.79 16 18 C -0.25 -6.94 9.63 -15.06 -0.15 -7.09 16 19 H 0.07 1.78 7.88 -52.48 -0.41 1.37 16 20 C 0.00 0.00 4.93 -17.43 -0.09 -0.09 16 21 N -0.90 -26.30 11.15 55.49 0.62 -25.69 16 22 Si 0.90 21.71 29.59 -169.99 -5.03 16.68 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 C 0.15 3.25 6.69 -3.60 -0.02 3.22 16 27 C 0.05 0.88 5.62 -3.70 -0.02 0.86 16 28 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.47 5.06 -51.93 -0.26 0.21 16 33 H 0.04 0.33 8.09 -51.93 -0.42 -0.09 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.32 6.95 -51.93 -0.36 -0.04 16 37 H 0.08 0.51 8.07 -51.93 -0.42 0.09 16 38 H 0.07 0.37 6.11 -51.93 -0.32 0.06 16 39 H 0.08 0.98 6.33 -51.93 -0.33 0.66 16 40 H 0.09 1.47 7.42 -51.93 -0.39 1.09 16 41 H 0.07 1.08 7.97 -51.93 -0.41 0.67 16 42 H 0.03 0.36 8.12 -51.93 -0.42 -0.07 16 43 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 1.02 6.16 -51.93 -0.32 0.70 16 45 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.09 2.34 6.12 -51.93 -0.32 2.03 16 47 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 48 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.06 1.17 7.96 -51.93 -0.41 0.75 16 50 H 0.06 1.02 7.99 -51.93 -0.41 0.60 16 51 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 399.45 15.07 6.02 6.02 Total: -1.00 -34.29 399.45 -8.24 -42.53 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -8.92 Total: -3.43 kcal Atomic # 6 Polarization: 12.77 SS G_CDS: 2.45 Total: 15.22 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: -1.51 Total: -59.33 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -1.25 Total: -17.69 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.29 -8.24 -42.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691940491.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.450 kcal (2) G-P(sol) polarization free energy of solvation -34.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds