Wall clock time and date at job start Tue Mar 31 2020 05:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47204 * 2 1 4 4 H 1.09000 * 109.46871 * 55.00706 * 3 2 1 5 5 F 1.39891 * 109.47558 * 295.00277 * 3 2 1 6 6 C 1.50704 * 109.47045 * 174.99991 * 3 2 1 7 7 O 1.21279 * 119.99604 * 45.00195 * 6 3 2 8 8 N 1.34778 * 119.99891 * 225.00493 * 6 3 2 9 9 C 1.47016 * 125.64797 * 0.04200 * 8 6 3 10 10 C 1.54371 * 107.28585 * 178.87405 * 9 8 6 11 11 C 1.55157 * 102.92314 * 337.85835 * 10 9 8 12 12 H 1.08999 * 111.00674 * 277.36291 * 11 10 9 13 13 C 1.53004 * 111.00571 * 153.54406 * 11 10 9 14 14 N 1.46898 * 109.46619 * 69.58741 * 13 11 10 15 15 C 1.46901 * 111.00443 * 66.04574 * 14 13 11 16 16 C 1.46906 * 110.99820 * 189.99887 * 14 13 11 17 17 C 1.50696 * 109.47351 * 169.99890 * 16 14 13 18 18 O 1.21297 * 120.00140 * 0.02562 * 17 16 14 19 19 N 1.34775 * 120.00393 * 180.02562 * 17 16 14 20 20 C 1.37096 * 120.00184 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00243 * 359.97438 * 20 19 17 22 22 C 1.38951 * 119.99747 * 180.02562 * 20 19 17 23 23 N 1.31411 * 120.00149 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99786 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.46923 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47098 * 119.99907 * 24 22 20 27 27 H 1.48496 * 109.46915 * 240.00093 * 24 22 20 28 28 C 1.47424 * 125.64370 * 179.97438 * 8 6 3 29 29 H 1.08994 * 109.47016 * 59.99607 * 1 2 3 30 30 H 1.08997 * 109.46823 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46541 * 299.99792 * 1 2 3 32 32 H 1.09010 * 109.47037 * 240.00535 * 2 1 3 33 33 H 1.09001 * 109.47400 * 120.00545 * 2 1 3 34 34 H 1.09002 * 109.88325 * 298.32182 * 9 8 6 35 35 H 1.09001 * 109.88627 * 59.33838 * 9 8 6 36 36 H 1.09009 * 110.75566 * 219.49289 * 10 9 8 37 37 H 1.09005 * 110.70936 * 96.20131 * 10 9 8 38 38 H 1.08994 * 109.47270 * 309.58606 * 13 11 10 39 39 H 1.08999 * 109.47017 * 189.58483 * 13 11 10 40 40 H 1.09002 * 109.47401 * 183.95136 * 15 14 13 41 41 H 1.09001 * 109.46874 * 63.95149 * 15 14 13 42 42 H 1.09004 * 109.46970 * 303.95282 * 15 14 13 43 43 H 1.08997 * 109.46995 * 289.99871 * 16 14 13 44 44 H 1.09001 * 109.46848 * 49.99877 * 16 14 13 45 45 H 0.96996 * 119.99654 * 0.02562 * 19 17 16 46 46 H 0.96999 * 119.99951 * 179.97438 * 23 22 20 47 47 H 1.09002 * 110.36486 * 85.32609 * 28 8 6 48 48 H 1.08996 * 110.36975 * 323.00134 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 0.8419 5 9 1.6700 2.0680 -1.1953 6 6 3.5420 1.4442 0.1238 7 8 4.2064 0.6810 -0.5447 8 7 4.1468 2.2939 0.9775 9 6 3.4659 3.2667 1.8444 10 6 4.5550 3.9943 2.6613 11 6 5.7437 2.9980 2.6196 12 1 5.6328 2.2254 3.3805 13 6 7.0784 3.7297 2.7756 14 7 7.1976 4.2436 4.1465 15 6 7.2871 3.1431 5.1155 16 6 8.3475 5.1494 4.2710 17 6 8.2978 5.8436 5.6076 18 8 7.3937 5.6068 6.3808 19 7 9.2579 6.7276 5.9440 20 6 9.2124 7.3595 7.1598 21 1 8.4070 7.1493 7.8478 22 6 10.2020 8.2713 7.5063 23 7 11.1818 8.5275 6.6689 24 14 10.1404 9.1319 9.1632 25 1 8.9457 8.6718 9.9157 26 1 11.3670 8.8082 9.9350 27 1 10.0590 10.6000 8.9557 28 6 5.6006 2.4007 1.1976 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.9167 3.9851 1.2356 35 1 2.7805 2.7492 2.5156 36 1 4.2242 4.1573 3.6871 37 1 4.8261 4.9380 2.1878 38 1 7.1219 4.5602 2.0711 39 1 7.8971 3.0390 2.5739 40 1 7.3039 3.5498 6.1267 41 1 8.2002 2.5753 4.9370 42 1 6.4235 2.4878 5.0017 43 1 9.2714 4.5764 4.1933 44 1 8.3127 5.8923 3.4742 45 1 9.9807 6.9173 5.3256 46 1 11.8724 9.1643 6.9106 47 1 6.0480 3.0668 0.4599 48 1 6.0647 1.4156 1.1514 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691972161.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:24 Heat of formation + Delta-G solvation = -116.921938 kcal Electronic energy + Delta-G solvation = -28104.610745 eV Core-core repulsion = 23915.918295 eV Total energy + Delta-G solvation = -4188.692450 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.190 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -48.25894 -40.40227 -38.80163 -37.94437 -36.17404 -34.43152 -33.89805 -32.33972 -31.25403 -29.80003 -28.56775 -27.78892 -26.38530 -24.79115 -23.62469 -22.46742 -22.01258 -20.22998 -19.75546 -19.16197 -18.11351 -17.85427 -17.03746 -16.80278 -16.17598 -15.75095 -15.58168 -15.31354 -15.12211 -14.64868 -14.42208 -14.16195 -14.02144 -13.71440 -13.69214 -13.43264 -13.39458 -13.26500 -12.88001 -12.71102 -12.57469 -12.28491 -12.14532 -11.81103 -11.61213 -11.56219 -11.46599 -11.34328 -11.29043 -11.15604 -11.02747 -10.93297 -10.62982 -10.35991 -10.24319 -10.10915 -9.50595 -9.04994 -8.48252 -7.99930 -7.87524 -6.43569 -3.84365 2.03649 2.41583 3.14673 3.25441 3.32225 3.75647 3.87918 3.90782 4.01606 4.17371 4.20092 4.33778 4.42424 4.51139 4.70822 4.86602 4.88932 4.97942 5.02078 5.07952 5.16600 5.18600 5.23428 5.32336 5.41482 5.45774 5.48295 5.60227 5.62221 5.68528 5.69409 5.73839 5.75877 5.83923 5.91499 5.97804 6.02733 6.12336 6.26160 6.53678 7.02429 7.22139 7.34273 7.53625 7.61861 8.04855 8.60003 9.16545 9.52897 10.04531 10.74213 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.033602 B = 0.001833 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.080918 B =15269.193244 C =15497.367120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.141 4.141 3 C 0.085 3.915 4 H 0.101 0.899 5 F -0.189 7.189 6 C 0.507 3.493 7 O -0.524 6.524 8 N -0.610 5.610 9 C 0.089 3.911 10 C -0.113 4.113 11 C -0.096 4.096 12 H 0.089 0.911 13 C 0.064 3.936 14 N -0.515 5.515 15 C 0.019 3.981 16 C 0.046 3.954 17 C 0.445 3.555 18 O -0.578 6.578 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.104 0.896 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.109 3.891 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.035 0.965 40 H 0.096 0.904 41 H 0.014 0.986 42 H 0.059 0.941 43 H 0.047 0.953 44 H 0.088 0.912 45 H 0.392 0.608 46 H 0.271 0.729 47 H 0.073 0.927 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.529 -13.399 -12.709 24.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.179 4.179 3 C 0.046 3.954 4 H 0.119 0.881 5 F -0.170 7.170 6 C 0.293 3.707 7 O -0.399 6.399 8 N -0.344 5.344 9 C -0.033 4.033 10 C -0.150 4.150 11 C -0.115 4.115 12 H 0.107 0.893 13 C -0.065 4.065 14 N -0.239 5.239 15 C -0.128 4.128 16 C -0.086 4.086 17 C 0.230 3.770 18 O -0.462 6.462 19 N -0.202 5.202 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.014 4.014 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.053 0.947 40 H 0.115 0.885 41 H 0.033 0.967 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.106 0.894 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.091 0.909 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.095 -13.600 -12.499 24.500 hybrid contribution 1.307 0.309 0.147 1.351 sum -14.787 -13.291 -12.352 23.407 Atomic orbital electron populations 1.21775 0.93966 1.02745 1.02593 1.22000 0.97411 0.93428 1.05067 1.21641 0.91687 0.96405 0.85684 0.88140 1.92881 1.91981 1.83922 1.48237 1.20653 0.90224 0.80172 0.79696 1.90737 1.66171 1.39347 1.43665 1.48573 1.08477 1.36817 1.40561 1.22333 0.96659 0.91284 0.93036 1.22591 0.93202 0.98039 1.01216 1.22377 0.95579 0.98039 0.95502 0.89300 1.22035 0.94903 0.98164 0.91362 1.61548 1.41580 1.17795 1.02952 1.22596 0.98667 0.92411 0.99168 1.21872 0.91808 0.96332 0.98542 1.19723 0.84723 0.84055 0.88503 1.90477 1.36374 1.66507 1.52857 1.41879 1.23521 1.37144 1.17612 1.19741 1.09916 1.19420 0.93693 0.87855 1.25263 0.95455 0.97703 0.99566 1.69618 1.12946 1.35505 1.36233 0.85807 0.78299 0.78807 0.81471 1.19230 1.20796 1.20763 1.22311 0.80396 1.01867 0.96776 0.91874 0.91604 0.92235 0.89424 0.89765 0.90957 0.91009 0.88749 0.90027 0.90451 0.94691 0.88509 0.96745 0.92196 0.93476 0.89417 0.77513 0.91931 0.90868 0.90200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.83 37.16 0.37 -0.47 16 2 C -0.14 -1.02 5.41 -26.73 -0.14 -1.16 16 3 C 0.09 0.72 3.54 -27.88 -0.10 0.62 16 4 H 0.10 0.59 6.68 -51.93 -0.35 0.24 16 5 F -0.19 -1.98 16.75 2.25 0.04 -1.95 16 6 C 0.51 5.66 7.19 -10.98 -0.08 5.58 16 7 O -0.52 -7.71 16.86 5.56 0.09 -7.62 16 8 N -0.61 -5.95 3.33 -170.50 -0.57 -6.52 16 9 C 0.09 0.67 5.95 -3.04 -0.02 0.65 16 10 C -0.11 -1.01 6.32 -24.87 -0.16 -1.16 16 11 C -0.10 -0.91 2.94 -88.48 -0.26 -1.17 16 12 H 0.09 0.88 6.34 -51.93 -0.33 0.55 16 13 C 0.06 0.71 4.40 -3.82 -0.02 0.70 16 14 N -0.52 -7.72 4.39 -244.37 -1.07 -8.79 16 15 C 0.02 0.29 9.03 60.07 0.54 0.83 16 16 C 0.05 0.77 5.45 -4.97 -0.03 0.74 16 17 C 0.44 10.07 7.51 -10.99 -0.08 9.99 16 18 O -0.58 -14.89 13.88 5.54 0.08 -14.82 16 19 N -0.56 -13.94 5.29 -10.96 -0.06 -14.00 16 20 C -0.30 -8.14 9.68 -14.93 -0.14 -8.28 16 21 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.20 13.05 55.50 0.72 -23.48 16 24 Si 0.93 20.73 29.55 -169.99 -5.02 15.70 16 25 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 26 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 27 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 28 C 0.11 1.06 6.38 -2.54 -0.02 1.04 16 29 H 0.06 0.37 7.93 -51.93 -0.41 -0.04 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.09 0.75 8.05 -51.92 -0.42 0.33 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.43 7.82 -51.93 -0.41 0.02 16 36 H 0.09 0.92 8.14 -51.92 -0.42 0.50 16 37 H 0.08 0.76 7.97 -51.93 -0.41 0.34 16 38 H 0.08 0.81 7.83 -51.93 -0.41 0.40 16 39 H 0.03 0.37 8.12 -51.93 -0.42 -0.05 16 40 H 0.10 1.81 5.88 -51.93 -0.31 1.50 16 41 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 42 H 0.06 0.76 6.23 -51.93 -0.32 0.44 16 43 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 44 H 0.09 1.33 7.93 -51.93 -0.41 0.92 16 45 H 0.39 9.28 7.90 -40.82 -0.32 8.96 16 46 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 47 H 0.07 0.70 8.04 -51.93 -0.42 0.28 16 48 H 0.08 0.82 8.04 -51.93 -0.42 0.40 16 LS Contribution 390.74 15.07 5.89 5.89 Total: -1.00 -32.51 390.74 -7.95 -40.47 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -7.82 Total: 6.73 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: -0.23 Total: 8.38 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: -0.97 Total: -52.79 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: 0.17 Total: -22.44 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.51 -7.95 -40.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691972161.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.454 kcal (2) G-P(sol) polarization free energy of solvation -32.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds