Wall clock time and date at job start Tue Mar 31 2020 05:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53008 * 109.46986 * 2 1 4 4 H 1.08998 * 109.46748 * 304.99892 * 3 2 1 5 5 F 1.39900 * 109.47355 * 64.99656 * 3 2 1 6 6 C 1.50695 * 109.46781 * 184.99818 * 3 2 1 7 7 O 1.21282 * 120.00544 * 314.99522 * 6 3 2 8 8 N 1.34780 * 119.99706 * 134.99869 * 6 3 2 9 9 C 1.47021 * 125.65006 * 359.97438 * 8 6 3 10 10 C 1.54323 * 107.27173 * 181.09993 * 9 8 6 11 11 C 1.55156 * 102.94428 * 22.19072 * 10 9 8 12 12 H 1.09001 * 111.00185 * 82.61163 * 11 10 9 13 13 C 1.52999 * 111.00595 * 206.42580 * 11 10 9 14 14 N 1.46906 * 109.46937 * 290.41976 * 13 11 10 15 15 C 1.46900 * 110.99589 * 293.95186 * 14 13 11 16 16 C 1.46892 * 110.99804 * 170.00123 * 14 13 11 17 17 C 1.50702 * 109.47256 * 189.99964 * 16 14 13 18 18 O 1.21293 * 119.99490 * 359.97438 * 17 16 14 19 19 N 1.34773 * 120.00426 * 180.02562 * 17 16 14 20 20 C 1.37097 * 120.00363 * 179.97438 * 19 17 16 21 21 H 1.08001 * 120.00037 * 0.02562 * 20 19 17 22 22 C 1.38945 * 120.00220 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99901 * 179.72435 * 22 20 19 24 24 Si 1.86800 * 120.00194 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.46758 * 269.72227 * 24 22 20 26 26 H 1.48499 * 109.47026 * 29.72075 * 24 22 20 27 27 H 1.48496 * 109.47474 * 149.72111 * 24 22 20 28 28 C 1.47469 * 125.62988 * 180.02562 * 8 6 3 29 29 H 1.09009 * 109.47303 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47543 * 300.00180 * 1 2 3 31 31 H 1.09000 * 109.47187 * 60.00404 * 1 2 3 32 32 H 1.08997 * 109.47386 * 239.99326 * 2 1 3 33 33 H 1.08997 * 109.46921 * 119.99128 * 2 1 3 34 34 H 1.08991 * 109.88283 * 61.67642 * 9 8 6 35 35 H 1.09003 * 110.00697 * 300.58471 * 9 8 6 36 36 H 1.08997 * 110.72027 * 263.82797 * 10 9 8 37 37 H 1.09001 * 110.87026 * 140.62351 * 10 9 8 38 38 H 1.08993 * 109.47177 * 170.41841 * 13 11 10 39 39 H 1.09000 * 109.47118 * 50.41737 * 13 11 10 40 40 H 1.09005 * 109.47247 * 296.04668 * 15 14 13 41 41 H 1.08997 * 109.47412 * 56.04901 * 15 14 13 42 42 H 1.08999 * 109.47041 * 176.05082 * 15 14 13 43 43 H 1.09000 * 109.47778 * 69.99571 * 16 14 13 44 44 H 1.09007 * 109.47317 * 309.99868 * 16 14 13 45 45 H 0.97000 * 120.00112 * 359.97438 * 19 17 16 46 46 H 0.96999 * 119.99993 * 180.27541 * 23 22 20 47 47 H 1.08998 * 110.40442 * 37.00497 * 28 8 6 48 48 H 1.09000 * 110.34539 * 274.67418 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 9 1.6698 2.0681 1.1954 6 6 3.5418 1.4443 -0.1238 7 8 4.2063 0.6812 0.5447 8 7 4.1466 2.2941 -0.9774 9 6 3.4657 3.2672 -1.8440 10 6 4.5549 3.9948 -2.6601 11 6 5.7433 2.9981 -2.6198 12 1 5.6317 2.2261 -3.3812 13 6 7.0780 3.7295 -2.7760 14 7 7.1967 4.2446 -4.1467 15 6 7.2853 3.1447 -5.1164 16 6 8.3466 5.1500 -4.2710 17 6 8.2964 5.8453 -5.6071 18 8 7.3917 5.6093 -6.3799 19 7 9.2571 6.7286 -5.9438 20 6 9.2116 7.3607 -7.1595 21 1 8.4057 7.1513 -7.8473 22 6 10.2018 8.2717 -7.5063 23 7 10.1611 8.8735 -8.6738 24 14 11.5954 8.6346 -6.3166 25 1 11.2138 9.7700 -5.4388 26 1 11.8614 7.4335 -5.4847 27 1 12.8187 8.9886 -7.0802 28 6 5.6009 2.4007 -1.1974 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5137 0.8901 34 1 2.9168 3.9854 -1.2351 35 1 2.7805 2.7518 -2.5171 36 1 4.8264 4.9380 -2.1861 37 1 4.2256 4.1609 -3.6858 38 1 7.8967 3.0385 -2.5754 39 1 7.1222 4.5596 -2.0709 40 1 8.1984 2.5765 -4.9389 41 1 6.4217 2.4895 -5.0027 42 1 7.3016 3.5521 -6.1273 43 1 9.2705 4.5768 -4.1943 44 1 8.3125 5.8924 -3.4736 45 1 9.9807 6.9170 -5.3260 46 1 10.8545 9.5065 -8.9176 47 1 6.0654 1.4157 -1.1513 48 1 6.0479 3.0667 -0.4593 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691972162.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:28 Heat of formation + Delta-G solvation = -109.615401 kcal Electronic energy + Delta-G solvation = -28160.184792 eV Core-core repulsion = 23971.809178 eV Total energy + Delta-G solvation = -4188.375615 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.190 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.27716 -40.43538 -38.93647 -38.04030 -36.27800 -34.44953 -33.95516 -32.39635 -31.68949 -29.84352 -28.64761 -27.93712 -26.45013 -24.74461 -23.60888 -22.47097 -22.00752 -20.28328 -19.78278 -19.36586 -18.27955 -18.12398 -17.06966 -16.82814 -16.21276 -15.78442 -15.60345 -15.40382 -15.17730 -14.92790 -14.43094 -14.19998 -14.06959 -13.77327 -13.69023 -13.47201 -13.29376 -13.20142 -12.92587 -12.75198 -12.61202 -12.45133 -12.30573 -12.04511 -11.89663 -11.59089 -11.55821 -11.43014 -11.38379 -11.21147 -11.07873 -11.01965 -10.68453 -10.61687 -10.13750 -9.99892 -9.56236 -9.08276 -8.61233 -8.20419 -7.99633 -6.33266 -3.84699 2.00905 2.38438 3.00383 3.04899 3.13396 3.70073 3.72440 3.83733 3.99672 4.08166 4.15407 4.30125 4.40396 4.44504 4.63746 4.77829 4.83601 4.86986 4.96256 5.00999 5.11895 5.16770 5.19321 5.26184 5.36240 5.42241 5.44505 5.49772 5.58659 5.60350 5.60951 5.68869 5.73024 5.77759 5.81499 5.85724 5.92586 5.99181 6.07836 6.47510 6.99173 7.10106 7.24468 7.56306 7.58985 8.12413 8.58034 8.93187 9.40393 9.81282 10.79808 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.032510 B = 0.001901 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.068179 B =14722.967019 C =14917.586718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.141 4.141 3 C 0.085 3.915 4 H 0.101 0.899 5 F -0.189 7.189 6 C 0.507 3.493 7 O -0.524 6.524 8 N -0.610 5.610 9 C 0.089 3.911 10 C -0.113 4.113 11 C -0.096 4.096 12 H 0.089 0.911 13 C 0.064 3.936 14 N -0.515 5.515 15 C 0.018 3.982 16 C 0.043 3.957 17 C 0.453 3.547 18 O -0.559 6.559 19 N -0.591 5.591 20 C -0.304 4.304 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.881 5.881 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.270 1.270 27 H -0.277 1.277 28 C 0.109 3.891 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.035 0.965 39 H 0.077 0.923 40 H 0.015 0.985 41 H 0.061 0.939 42 H 0.097 0.903 43 H 0.048 0.952 44 H 0.089 0.911 45 H 0.370 0.630 46 H 0.273 0.727 47 H 0.080 0.920 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.381 -14.449 17.518 26.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.179 4.179 3 C 0.046 3.954 4 H 0.119 0.881 5 F -0.170 7.170 6 C 0.293 3.707 7 O -0.399 6.399 8 N -0.345 5.345 9 C -0.033 4.033 10 C -0.151 4.151 11 C -0.115 4.115 12 H 0.108 0.892 13 C -0.064 4.064 14 N -0.239 5.239 15 C -0.129 4.129 16 C -0.088 4.088 17 C 0.239 3.761 18 O -0.441 6.441 19 N -0.231 5.231 20 C -0.433 4.433 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.521 5.521 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.196 1.196 27 H -0.202 1.202 28 C -0.013 4.013 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.113 0.887 38 H 0.054 0.946 39 H 0.096 0.904 40 H 0.033 0.967 41 H 0.080 0.920 42 H 0.116 0.884 43 H 0.066 0.934 44 H 0.107 0.893 45 H 0.203 0.797 46 H 0.084 0.916 47 H 0.098 0.902 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.019 -14.625 17.168 26.555 hybrid contribution 1.997 0.134 1.052 2.261 sum -12.023 -14.491 18.220 26.201 Atomic orbital electron populations 1.21777 0.93948 1.02762 1.02603 1.21998 0.97431 0.93407 1.05065 1.21644 0.91655 0.96428 0.85694 0.88120 1.92884 1.91978 1.83923 1.48233 1.20659 0.90237 0.80149 0.79677 1.90738 1.66165 1.39347 1.43668 1.48582 1.08443 1.36836 1.40591 1.22314 0.96662 0.91280 0.93048 1.22582 0.93219 0.97996 1.01301 1.22384 0.95509 0.98073 0.95563 0.89231 1.22039 0.95031 0.98175 0.91200 1.61540 1.41304 1.17930 1.03098 1.22612 0.98835 0.92409 0.99093 1.21905 0.92110 0.96515 0.98319 1.19625 0.84423 0.83556 0.88516 1.90519 1.35629 1.65410 1.52562 1.42220 1.23753 1.39370 1.17753 1.19417 1.11692 1.19516 0.92681 0.86269 1.25037 0.97951 0.96709 0.96470 1.69620 1.34664 1.27833 1.20010 0.86676 0.82588 0.78988 0.81142 1.19606 1.19565 1.20206 1.22320 0.80440 1.01858 0.96708 0.91593 0.91872 0.92220 0.89758 0.89430 0.90934 0.90952 0.90061 0.88692 0.94640 0.90435 0.96651 0.92011 0.88449 0.93360 0.89282 0.79738 0.91617 0.90189 0.90895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.83 37.15 0.37 -0.45 16 2 C -0.14 -0.99 5.41 -26.73 -0.14 -1.14 16 3 C 0.09 0.70 3.54 -27.88 -0.10 0.60 16 4 H 0.10 0.57 6.68 -51.93 -0.35 0.22 16 5 F -0.19 -1.94 16.75 2.25 0.04 -1.91 16 6 C 0.51 5.52 7.19 -10.99 -0.08 5.44 16 7 O -0.52 -7.57 16.86 5.56 0.09 -7.47 16 8 N -0.61 -5.74 3.33 -170.47 -0.57 -6.31 16 9 C 0.09 0.64 5.95 -3.06 -0.02 0.62 16 10 C -0.11 -0.96 6.32 -24.90 -0.16 -1.12 16 11 C -0.10 -0.87 2.95 -88.46 -0.26 -1.13 16 12 H 0.09 0.85 6.34 -51.93 -0.33 0.52 16 13 C 0.06 0.67 4.40 -3.82 -0.02 0.65 16 14 N -0.52 -7.30 4.39 -244.37 -1.07 -8.37 16 15 C 0.02 0.26 9.03 60.06 0.54 0.80 16 16 C 0.04 0.67 5.45 -4.98 -0.03 0.64 16 17 C 0.45 9.82 7.51 -10.99 -0.08 9.73 16 18 O -0.56 -14.20 13.88 5.55 0.08 -14.12 16 19 N -0.59 -13.66 5.09 -10.96 -0.06 -13.71 16 20 C -0.30 -8.41 10.16 -14.94 -0.15 -8.56 16 21 H 0.12 3.77 7.39 -52.49 -0.39 3.38 16 22 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 23 N -0.88 -25.38 13.96 55.50 0.77 -24.61 16 24 Si 0.88 19.03 27.74 -169.99 -4.72 14.31 16 25 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 26 H -0.27 -5.31 6.51 56.52 0.37 -4.95 16 27 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 28 C 0.11 1.01 6.38 -2.49 -0.02 0.99 16 29 H 0.07 0.30 8.14 -51.92 -0.42 -0.13 16 30 H 0.06 0.37 7.94 -51.93 -0.41 -0.05 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.09 0.73 8.05 -51.93 -0.42 0.31 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.41 7.82 -51.93 -0.41 0.01 16 36 H 0.08 0.71 7.96 -51.93 -0.41 0.30 16 37 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.04 0.35 8.12 -51.93 -0.42 -0.07 16 39 H 0.08 0.74 7.83 -51.93 -0.41 0.33 16 40 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 41 H 0.06 0.75 6.23 -51.93 -0.32 0.43 16 42 H 0.10 1.77 5.88 -51.93 -0.31 1.46 16 43 H 0.05 0.68 8.12 -51.93 -0.42 0.26 16 44 H 0.09 1.20 7.93 -51.93 -0.41 0.79 16 45 H 0.37 7.51 5.76 -40.82 -0.23 7.27 16 46 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 47 H 0.08 0.79 8.04 -51.93 -0.42 0.37 16 48 H 0.07 0.65 8.04 -51.93 -0.42 0.24 16 LS Contribution 387.62 15.07 5.84 5.84 Total: -1.00 -33.75 387.62 -7.61 -41.36 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -7.78 Total: 6.88 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: -0.24 Total: 8.11 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: -0.92 Total: -53.00 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: 0.17 Total: -21.60 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.91 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -4.72 Total: 14.31 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.75 -7.61 -41.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691972162.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.260 kcal (2) G-P(sol) polarization free energy of solvation -33.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds