Wall clock time and date at job start Tue Mar 31 2020 05:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47212 * 2 1 4 4 H 1.09001 * 109.46957 * 54.99486 * 3 2 1 5 5 F 1.39899 * 109.46465 * 294.99834 * 3 2 1 6 6 C 1.50690 * 109.47278 * 174.99604 * 3 2 1 7 7 O 1.21287 * 120.00098 * 44.99654 * 6 3 2 8 8 N 1.34774 * 120.00056 * 224.99987 * 6 3 2 9 9 C 1.47018 * 125.65029 * 359.95931 * 8 6 3 10 10 C 1.54372 * 107.29103 * 181.13095 * 9 8 6 11 11 C 1.55157 * 102.92010 * 22.13544 * 10 9 8 12 12 H 1.09003 * 111.00188 * 82.64231 * 11 10 9 13 13 C 1.53004 * 111.00251 * 206.45481 * 11 10 9 14 14 N 1.46896 * 109.47166 * 290.41738 * 13 11 10 15 15 C 1.46897 * 111.00124 * 293.95737 * 14 13 11 16 16 C 1.46902 * 110.99925 * 169.99935 * 14 13 11 17 17 C 1.50696 * 109.46978 * 190.00261 * 16 14 13 18 18 O 1.21295 * 120.00238 * 359.97438 * 17 16 14 19 19 N 1.34777 * 120.00076 * 180.02562 * 17 16 14 20 20 C 1.37105 * 120.00244 * 180.02562 * 19 17 16 21 21 H 1.07998 * 119.99708 * 359.97438 * 20 19 17 22 22 C 1.38945 * 120.00017 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99901 * 359.71836 * 22 20 19 24 24 Si 1.86800 * 120.00194 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46758 * 269.72227 * 24 22 20 26 26 H 1.48499 * 109.47026 * 29.72075 * 24 22 20 27 27 H 1.48496 * 109.47474 * 149.72111 * 24 22 20 28 28 C 1.47431 * 125.64959 * 180.02562 * 8 6 3 29 29 H 1.09003 * 109.46856 * 60.00489 * 1 2 3 30 30 H 1.08997 * 109.46631 * 179.97438 * 1 2 3 31 31 H 1.08988 * 109.47140 * 300.00075 * 1 2 3 32 32 H 1.09002 * 109.47680 * 239.99663 * 2 1 3 33 33 H 1.09003 * 109.46856 * 119.99511 * 2 1 3 34 34 H 1.09001 * 109.88040 * 300.51265 * 9 8 6 35 35 H 1.08998 * 109.88533 * 61.52066 * 9 8 6 36 36 H 1.08999 * 110.69934 * 263.79182 * 10 9 8 37 37 H 1.08997 * 110.75905 * 140.50575 * 10 9 8 38 38 H 1.09000 * 109.46595 * 170.42279 * 13 11 10 39 39 H 1.08995 * 109.47112 * 50.42008 * 13 11 10 40 40 H 1.08997 * 109.47316 * 296.04141 * 15 14 13 41 41 H 1.09003 * 109.47554 * 56.04624 * 15 14 13 42 42 H 1.09007 * 109.46965 * 176.04316 * 15 14 13 43 43 H 1.08999 * 109.46697 * 70.00700 * 16 14 13 44 44 H 1.08993 * 109.47253 * 310.00350 * 16 14 13 45 45 H 0.97004 * 119.99652 * 359.97438 * 19 17 16 46 46 H 0.97000 * 120.00371 * 0.28325 * 23 22 20 47 47 H 1.09003 * 110.36790 * 36.99410 * 28 8 6 48 48 H 1.08997 * 110.36608 * 274.67919 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 9 1.6699 2.0679 -1.1955 6 6 3.5418 1.4444 0.1239 7 8 4.2064 0.6811 -0.5445 8 7 4.1466 2.2942 0.9775 9 6 3.4658 3.2682 1.8430 10 6 4.5582 4.0354 2.6184 11 6 5.8157 3.8398 1.7308 12 1 5.8331 4.5610 0.9137 13 6 7.0951 3.9296 2.5651 14 7 7.2891 5.3139 3.0166 15 6 7.5498 6.2069 1.8797 16 6 8.3682 5.3973 4.0099 17 6 8.3768 6.7716 4.6281 18 8 7.5642 7.6003 4.2756 19 7 9.2880 7.0803 5.5719 20 6 9.2955 8.3305 6.1347 21 1 8.5715 9.0680 5.8214 22 6 10.2346 8.6485 7.1082 23 7 11.1121 7.7493 7.4933 24 14 10.2453 10.3521 7.8745 25 1 11.1345 11.2434 7.0871 26 1 8.8664 10.9033 7.8749 27 1 10.7434 10.2638 9.2706 28 6 5.6005 2.4019 1.1970 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.8865 3.9631 1.2349 35 1 2.8081 2.7489 2.5400 36 1 4.7103 3.5971 3.6047 37 1 4.3042 5.0922 2.6998 38 1 7.9469 3.6227 1.9580 39 1 7.0109 3.2733 3.4312 40 1 8.4873 5.9226 1.4019 41 1 6.7357 6.1255 1.1595 42 1 7.6199 7.2353 2.2341 43 1 9.3255 5.2121 3.5226 44 1 8.2055 4.6504 4.7868 45 1 9.9381 6.4177 5.8535 46 1 11.1068 6.8648 7.0951 47 1 6.1372 2.2611 0.2588 48 1 5.9278 1.6702 1.9356 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691972163.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:34 Heat of formation + Delta-G solvation = -115.922879 kcal Electronic energy + Delta-G solvation = -28141.201174 eV Core-core repulsion = 23952.552047 eV Total energy + Delta-G solvation = -4188.649127 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.190 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.27428 -40.43420 -38.90251 -38.02689 -36.28632 -34.45871 -34.23974 -32.38860 -31.12302 -29.83597 -28.58858 -27.79589 -26.41685 -24.58089 -23.64064 -22.52116 -22.06368 -20.27678 -19.79609 -19.54612 -18.08209 -17.90600 -17.33769 -16.59053 -16.39515 -15.90417 -15.60609 -15.45819 -15.27811 -14.65398 -14.37638 -14.14456 -14.04080 -13.78139 -13.72339 -13.68387 -13.48444 -13.21276 -12.91964 -12.73970 -12.65024 -12.31459 -12.29651 -11.87307 -11.59784 -11.56223 -11.42615 -11.32418 -11.22181 -11.15946 -11.06688 -10.88601 -10.67343 -10.23498 -10.13859 -9.87759 -9.53087 -9.08238 -8.54689 -8.06591 -7.94959 -6.76904 -3.90253 2.00676 2.38753 3.29235 3.33783 3.52776 3.71991 3.81918 3.85018 3.99301 4.14817 4.27170 4.30358 4.39594 4.46504 4.66626 4.84140 4.85339 4.89989 4.95707 5.01384 5.12264 5.16343 5.22221 5.27561 5.36338 5.43027 5.43345 5.52948 5.59166 5.61103 5.62863 5.68474 5.72421 5.79228 5.83545 5.88784 5.98860 6.01043 6.08502 6.48047 6.99315 7.12974 7.26600 7.59020 7.79601 8.06668 8.58692 8.78876 9.46098 9.86831 10.66558 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.033799 B = 0.001834 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.236746 B =15261.258942 C =15472.775509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.141 4.141 3 C 0.085 3.915 4 H 0.101 0.899 5 F -0.189 7.189 6 C 0.507 3.493 7 O -0.523 6.523 8 N -0.610 5.610 9 C 0.089 3.911 10 C -0.113 4.113 11 C -0.096 4.096 12 H 0.089 0.911 13 C 0.065 3.935 14 N -0.515 5.515 15 C 0.019 3.981 16 C 0.046 3.954 17 C 0.447 3.553 18 O -0.571 6.571 19 N -0.577 5.577 20 C -0.381 4.381 21 H 0.099 0.901 22 C -0.010 4.010 23 N -0.902 5.902 24 Si 1.093 2.907 25 H -0.285 1.285 26 H -0.283 1.283 27 H -0.281 1.281 28 C 0.110 3.890 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.035 0.965 39 H 0.077 0.923 40 H 0.014 0.986 41 H 0.061 0.939 42 H 0.096 0.904 43 H 0.047 0.953 44 H 0.087 0.913 45 H 0.375 0.625 46 H 0.261 0.739 47 H 0.079 0.921 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.174 -14.881 -11.546 24.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.179 4.179 3 C 0.046 3.954 4 H 0.118 0.882 5 F -0.170 7.170 6 C 0.293 3.707 7 O -0.399 6.399 8 N -0.345 5.345 9 C -0.033 4.033 10 C -0.150 4.150 11 C -0.116 4.116 12 H 0.107 0.893 13 C -0.064 4.064 14 N -0.238 5.238 15 C -0.129 4.129 16 C -0.086 4.086 17 C 0.233 3.767 18 O -0.454 6.454 19 N -0.215 5.215 20 C -0.511 4.511 21 H 0.117 0.883 22 C -0.212 4.212 23 N -0.541 5.541 24 Si 0.920 3.080 25 H -0.212 1.212 26 H -0.209 1.209 27 H -0.207 1.207 28 C -0.013 4.013 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.112 0.888 38 H 0.053 0.947 39 H 0.095 0.905 40 H 0.033 0.967 41 H 0.080 0.920 42 H 0.115 0.885 43 H 0.065 0.935 44 H 0.105 0.895 45 H 0.208 0.792 46 H 0.072 0.928 47 H 0.098 0.902 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.084 -13.625 -10.867 23.716 hybrid contribution 0.404 -1.633 -1.389 2.182 sum -15.680 -15.258 -12.257 25.078 Atomic orbital electron populations 1.21775 0.93952 1.02749 1.02608 1.22001 0.97422 0.93412 1.05058 1.21643 0.91646 0.96406 0.85710 0.88154 1.92887 1.91968 1.83929 1.48198 1.20659 0.90256 0.80311 0.79507 1.90740 1.66144 1.39252 1.43751 1.48573 1.08448 1.36864 1.40566 1.22331 0.96628 0.91150 0.93201 1.22585 0.92489 1.01677 0.98283 1.22377 0.95342 0.95344 0.98492 0.89267 1.22034 0.95352 0.90799 0.98228 1.61539 1.43475 1.05622 1.13207 1.22602 0.98178 1.00075 0.92038 1.21867 0.92912 0.98044 0.95732 1.19645 0.84359 0.89016 0.83723 1.90485 1.40565 1.50458 1.63931 1.41955 1.29730 1.14076 1.35745 1.20557 1.18863 0.90169 1.21468 0.88276 1.26500 0.92665 1.06719 0.95344 1.70874 1.35302 1.05305 1.42636 0.83093 0.76239 0.72335 0.76379 1.21150 1.20924 1.20657 1.22300 0.80366 0.97120 1.01520 0.91853 0.91597 0.92242 0.89411 0.89786 0.90959 0.90951 0.90062 0.88766 0.94665 0.90470 0.96698 0.92028 0.88545 0.93543 0.89478 0.79214 0.92750 0.90213 0.90859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.83 37.16 0.37 -0.45 16 2 C -0.14 -0.99 5.41 -26.73 -0.14 -1.14 16 3 C 0.09 0.71 3.54 -27.88 -0.10 0.61 16 4 H 0.10 0.57 6.73 -51.93 -0.35 0.22 16 5 F -0.19 -1.99 16.75 2.25 0.04 -1.95 16 6 C 0.51 5.63 7.19 -10.99 -0.08 5.55 16 7 O -0.52 -7.67 16.86 5.55 0.09 -7.58 16 8 N -0.61 -5.91 3.33 -170.51 -0.57 -6.47 16 9 C 0.09 0.67 5.91 -3.04 -0.02 0.65 16 10 C -0.11 -1.00 6.32 -24.87 -0.16 -1.16 16 11 C -0.10 -0.93 2.94 -88.48 -0.26 -1.19 16 12 H 0.09 0.93 6.34 -51.93 -0.33 0.60 16 13 C 0.06 0.71 4.40 -3.82 -0.02 0.70 16 14 N -0.51 -7.73 4.39 -244.38 -1.07 -8.80 16 15 C 0.02 0.29 9.03 60.06 0.54 0.83 16 16 C 0.05 0.77 5.45 -4.98 -0.03 0.74 16 17 C 0.45 10.16 7.51 -10.99 -0.08 10.08 16 18 O -0.57 -14.89 13.88 5.54 0.08 -14.81 16 19 N -0.58 -14.16 5.28 -10.96 -0.06 -14.22 16 20 C -0.38 -10.52 9.68 -14.93 -0.14 -10.67 16 21 H 0.10 2.90 7.16 -52.49 -0.38 2.52 16 22 C -0.01 -0.27 5.50 -17.47 -0.10 -0.36 16 23 N -0.90 -24.97 13.68 55.50 0.76 -24.21 16 24 Si 1.09 24.01 29.92 -169.99 -5.09 18.92 16 25 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 26 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 27 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 28 C 0.11 1.05 6.38 -2.54 -0.02 1.03 16 29 H 0.06 0.37 7.94 -51.93 -0.41 -0.04 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.26 8.14 -51.94 -0.42 -0.17 16 32 H 0.09 0.74 8.05 -51.93 -0.42 0.32 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.41 7.91 -51.93 -0.41 -0.01 16 36 H 0.08 0.72 7.97 -51.93 -0.41 0.31 16 37 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.04 0.37 8.12 -51.93 -0.42 -0.05 16 39 H 0.08 0.78 7.83 -51.93 -0.41 0.38 16 40 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 41 H 0.06 0.80 6.23 -51.93 -0.32 0.48 16 42 H 0.10 1.83 5.88 -51.93 -0.31 1.52 16 43 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 44 H 0.09 1.29 7.93 -51.93 -0.41 0.88 16 45 H 0.37 8.51 6.73 -40.82 -0.27 8.24 16 46 H 0.26 6.94 6.78 -40.82 -0.28 6.66 16 47 H 0.08 0.84 8.04 -51.93 -0.42 0.42 16 48 H 0.07 0.65 8.03 -51.93 -0.42 0.24 16 LS Contribution 389.13 15.07 5.86 5.86 Total: -1.00 -33.92 389.13 -7.90 -41.82 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -7.72 Total: 6.22 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -0.23 Total: 5.22 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: -0.94 Total: -53.70 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: 0.17 Total: -22.39 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 24.01 SS G_CDS: -5.09 Total: 18.92 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.92 -7.90 -41.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691972163.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.102 kcal (2) G-P(sol) polarization free energy of solvation -33.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds