Wall clock time and date at job start Tue Mar 31 2020 05:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47286 * 2 1 4 4 H 1.09007 * 109.46859 * 305.00031 * 3 2 1 5 5 F 1.39897 * 109.47187 * 64.99793 * 3 2 1 6 6 C 1.50692 * 109.47245 * 185.00055 * 3 2 1 7 7 O 1.21280 * 120.00101 * 315.00084 * 6 3 2 8 8 N 1.34784 * 120.00162 * 134.99707 * 6 3 2 9 9 C 1.47019 * 125.64786 * 359.97438 * 8 6 3 10 10 C 1.54322 * 107.27101 * 178.96188 * 9 8 6 11 11 C 1.55154 * 102.94292 * 337.80674 * 10 9 8 12 12 H 1.08995 * 111.00178 * 277.42960 * 11 10 9 13 13 C 1.52997 * 111.00190 * 153.57761 * 11 10 9 14 14 N 1.46894 * 109.47389 * 71.83284 * 13 11 10 15 15 C 1.46905 * 111.00063 * 199.75963 * 14 13 11 16 16 C 1.46896 * 111.00120 * 75.80320 * 14 13 11 17 17 C 1.50700 * 109.47205 * 190.00225 * 16 14 13 18 18 O 1.21286 * 120.00196 * 359.97438 * 17 16 14 19 19 N 1.34776 * 119.99914 * 180.02562 * 17 16 14 20 20 C 1.37100 * 120.00035 * 179.97438 * 19 17 16 21 21 H 1.08002 * 119.99803 * 359.97438 * 20 19 17 22 22 C 1.38951 * 120.00146 * 179.97438 * 20 19 17 23 23 N 1.31416 * 119.99848 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00026 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47397 * 90.00048 * 24 22 20 26 26 H 1.48501 * 109.47375 * 210.00053 * 24 22 20 27 27 H 1.48502 * 109.47435 * 330.00190 * 24 22 20 28 28 C 1.47426 * 125.65029 * 180.02562 * 8 6 3 29 29 H 1.09009 * 109.47259 * 300.00339 * 1 2 3 30 30 H 1.09003 * 109.47508 * 59.99960 * 1 2 3 31 31 H 1.09000 * 109.47286 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47028 * 239.99458 * 2 1 3 33 33 H 1.09001 * 109.46991 * 120.00021 * 2 1 3 34 34 H 1.09006 * 109.88130 * 298.38008 * 9 8 6 35 35 H 1.09000 * 109.88055 * 59.53914 * 9 8 6 36 36 H 1.09004 * 110.71899 * 96.16925 * 10 9 8 37 37 H 1.08998 * 110.71638 * 219.26521 * 10 9 8 38 38 H 1.09001 * 109.46733 * 191.83260 * 13 11 10 39 39 H 1.09002 * 109.47454 * 311.82953 * 13 11 10 40 40 H 1.08998 * 109.47266 * 65.04084 * 15 14 13 41 41 H 1.09001 * 109.47122 * 185.04264 * 15 14 13 42 42 H 1.09003 * 109.46755 * 305.03774 * 15 14 13 43 43 H 1.09000 * 109.47310 * 310.00140 * 16 14 13 44 44 H 1.09000 * 109.47129 * 70.00156 * 16 14 13 45 45 H 0.97001 * 120.00237 * 359.97438 * 19 17 16 46 46 H 0.97002 * 119.99778 * 179.97438 * 23 22 20 47 47 H 1.09007 * 110.36288 * 322.94094 * 28 8 6 48 48 H 1.09000 * 110.36735 * 85.26417 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 9 1.6699 2.0680 1.1954 6 6 3.5418 1.4442 -0.1238 7 8 4.2063 0.6810 0.5446 8 7 4.1467 2.2940 -0.9775 9 6 3.4658 3.2671 -1.8441 10 6 4.5582 4.0324 -2.6203 11 6 5.8157 3.8391 -1.7322 12 1 5.8322 4.5612 -0.9160 13 6 7.0951 3.9281 -2.5664 14 7 7.3172 5.3215 -2.9752 15 6 8.2263 5.3937 -4.1269 16 6 7.8229 6.1248 -1.8541 17 6 7.8059 7.5832 -2.2332 18 8 7.4119 7.9202 -3.3297 19 7 8.2297 8.5129 -1.3543 20 6 8.2148 9.8397 -1.6994 21 1 7.8638 10.1398 -2.6757 22 6 8.6511 10.7983 -0.7931 23 7 9.0786 10.4331 0.3947 24 14 8.6301 12.6060 -1.2630 25 1 7.3235 13.2010 -0.8837 26 1 9.7227 13.3156 -0.5502 27 1 8.8275 12.7388 -2.7289 28 6 5.6005 2.4009 -1.1977 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.8104 2.7466 -2.5425 35 1 2.8863 3.9625 -1.2368 36 1 4.7108 3.5925 -3.6059 37 1 4.3021 5.0883 -2.7063 38 1 7.9414 3.5847 -1.9714 39 1 6.9957 3.3010 -3.4524 40 1 7.7555 4.9256 -4.9913 41 1 8.4444 6.4375 -4.3527 42 1 9.1536 4.8716 -3.8910 43 1 7.1896 5.9691 -0.9807 44 1 8.8437 5.8217 -1.6213 45 1 8.5452 8.2434 -0.4776 46 1 9.3836 11.1022 1.0273 47 1 6.1375 2.2607 -0.2595 48 1 5.9272 1.6686 -1.9360 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691972164.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:38 Heat of formation + Delta-G solvation = -117.400425 kcal Electronic energy + Delta-G solvation = -28379.194401 eV Core-core repulsion = 24190.481203 eV Total energy + Delta-G solvation = -4188.713199 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.190 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -48.19188 -40.34859 -38.80031 -37.87449 -36.14889 -34.39797 -33.88570 -32.31916 -31.25282 -29.75472 -28.46933 -27.99793 -26.21898 -24.70213 -23.58785 -22.40726 -21.92750 -20.40652 -19.75684 -19.08656 -18.02113 -17.82313 -17.25166 -16.43356 -16.32248 -15.80610 -15.40271 -15.29919 -14.97193 -14.49441 -14.36451 -14.28224 -13.89397 -13.73530 -13.66177 -13.52950 -13.39677 -13.15327 -12.77547 -12.64538 -12.58503 -12.23965 -12.16775 -11.85447 -11.56168 -11.52594 -11.48713 -11.34984 -11.29563 -11.08716 -10.99968 -10.91998 -10.58400 -10.40431 -10.22771 -10.05980 -9.48365 -9.00213 -8.44608 -7.99297 -7.88826 -6.42540 -3.83456 2.08385 2.47037 3.16926 3.25766 3.31104 3.80450 3.88897 3.94259 4.05677 4.20553 4.21890 4.38601 4.45641 4.55970 4.70724 4.90254 4.92426 5.01347 5.07159 5.08937 5.20719 5.22225 5.25244 5.35509 5.46518 5.47883 5.50870 5.62486 5.64684 5.67929 5.72295 5.75338 5.77554 5.88576 5.93096 5.99722 6.07599 6.17911 6.27909 6.49930 7.07307 7.23639 7.35121 7.54247 7.66866 8.05398 8.60715 9.17197 9.53664 10.05228 10.75144 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.016722 B = 0.002236 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.071599 B =12520.385562 C =13376.330029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.141 4.141 3 C 0.085 3.915 4 H 0.100 0.900 5 F -0.188 7.188 6 C 0.507 3.493 7 O -0.524 6.524 8 N -0.610 5.610 9 C 0.089 3.911 10 C -0.113 4.113 11 C -0.096 4.096 12 H 0.090 0.910 13 C 0.066 3.934 14 N -0.516 5.516 15 C 0.025 3.975 16 C 0.043 3.957 17 C 0.444 3.556 18 O -0.578 6.578 19 N -0.565 5.565 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.109 3.891 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.038 0.962 39 H 0.076 0.924 40 H 0.060 0.940 41 H 0.095 0.905 42 H 0.013 0.987 43 H 0.087 0.913 44 H 0.047 0.953 45 H 0.392 0.608 46 H 0.271 0.729 47 H 0.080 0.920 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.040 -19.803 -3.216 23.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.179 4.179 3 C 0.046 3.954 4 H 0.118 0.882 5 F -0.169 7.169 6 C 0.293 3.707 7 O -0.399 6.399 8 N -0.344 5.344 9 C -0.033 4.033 10 C -0.150 4.150 11 C -0.116 4.116 12 H 0.108 0.892 13 C -0.063 4.063 14 N -0.240 5.240 15 C -0.123 4.123 16 C -0.089 4.089 17 C 0.229 3.771 18 O -0.462 6.462 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.194 1.194 28 C -0.013 4.013 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.113 0.887 38 H 0.056 0.944 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.113 0.887 42 H 0.032 0.968 43 H 0.105 0.895 44 H 0.065 0.935 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.098 0.902 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.371 -19.701 -3.505 23.526 hybrid contribution 0.984 0.548 0.775 1.367 sum -11.386 -19.154 -2.730 22.449 Atomic orbital electron populations 1.21778 0.93988 1.02694 1.02628 1.21995 0.97390 0.93473 1.05017 1.21637 0.91689 0.96329 0.85763 0.88191 1.92893 1.91954 1.83906 1.48153 1.20653 0.90245 0.80329 0.79505 1.90735 1.66147 1.39331 1.43697 1.48573 1.08480 1.36855 1.40529 1.22324 0.96644 0.91173 0.93175 1.22571 0.92689 1.01744 0.98031 1.22381 0.95367 0.95202 0.98623 0.89193 1.22018 0.95387 0.90370 0.98530 1.61511 1.48151 1.08008 1.06296 1.22508 0.92813 1.04548 0.92447 1.21926 0.98817 0.93978 0.94144 1.19724 0.84400 0.86462 0.86485 1.90484 1.51617 1.81546 1.22558 1.41886 1.56480 1.06277 1.15478 1.19686 1.40350 0.81178 1.01607 0.87913 1.25268 0.96995 1.00601 0.95140 1.69615 1.43323 1.35152 1.06184 0.85862 0.77833 0.81874 0.78737 1.20396 1.20965 1.19440 1.22319 0.80353 0.97156 1.01519 0.91822 0.92269 0.91639 0.89840 0.89408 0.91066 0.90843 0.90350 0.88691 0.94397 0.90550 0.92119 0.88670 0.96831 0.89500 0.93487 0.77519 0.91869 0.90151 0.90996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.83 37.16 0.37 -0.52 16 2 C -0.14 -1.06 5.41 -26.73 -0.14 -1.20 16 3 C 0.09 0.77 3.54 -27.89 -0.10 0.67 16 4 H 0.10 0.64 6.74 -51.93 -0.35 0.29 16 5 F -0.19 -2.16 16.75 2.25 0.04 -2.12 16 6 C 0.51 5.99 7.19 -10.99 -0.08 5.91 16 7 O -0.52 -8.03 16.86 5.56 0.09 -7.94 16 8 N -0.61 -6.33 3.33 -170.51 -0.57 -6.90 16 9 C 0.09 0.73 5.90 -3.07 -0.02 0.71 16 10 C -0.11 -1.05 6.35 -24.90 -0.16 -1.21 16 11 C -0.10 -1.01 3.09 -88.46 -0.27 -1.28 16 12 H 0.09 1.08 6.71 -51.93 -0.35 0.73 16 13 C 0.07 0.74 4.44 -3.83 -0.02 0.72 16 14 N -0.52 -7.81 4.36 -244.37 -1.07 -8.87 16 15 C 0.02 0.37 9.15 60.07 0.55 0.92 16 16 C 0.04 0.73 5.27 -4.98 -0.03 0.70 16 17 C 0.44 10.12 7.42 -10.99 -0.08 10.04 16 18 O -0.58 -14.97 13.96 5.55 0.08 -14.89 16 19 N -0.56 -14.05 5.29 -10.96 -0.06 -14.11 16 20 C -0.30 -8.20 9.68 -14.93 -0.14 -8.34 16 21 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.41 13.05 55.50 0.72 -23.68 16 24 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 25 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 28 C 0.11 1.11 6.38 -2.52 -0.02 1.09 16 29 H 0.06 0.41 7.94 -51.92 -0.41 0.00 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.09 0.78 8.05 -51.93 -0.42 0.36 16 34 H 0.07 0.42 7.91 -51.93 -0.41 0.01 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.67 7.93 -51.93 -0.41 0.26 16 37 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.04 0.41 8.00 -51.93 -0.42 -0.01 16 39 H 0.08 0.75 7.79 -51.93 -0.40 0.34 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.09 1.79 5.79 -51.93 -0.30 1.49 16 42 H 0.01 0.18 8.13 -51.93 -0.42 -0.24 16 43 H 0.09 1.36 6.59 -51.93 -0.34 1.01 16 44 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 45 H 0.39 9.40 7.90 -40.82 -0.32 9.07 16 46 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 47 H 0.08 0.91 8.04 -51.93 -0.42 0.49 16 48 H 0.07 0.66 8.04 -51.93 -0.42 0.24 16 LS Contribution 391.62 15.07 5.90 5.90 Total: -1.00 -32.77 391.62 -7.98 -40.75 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -7.86 Total: 7.31 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: -0.24 Total: 8.68 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: -0.97 Total: -53.56 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: 0.17 Total: -22.83 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.77 -7.98 -40.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691972164.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.651 kcal (2) G-P(sol) polarization free energy of solvation -32.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds