Wall clock time and date at job start Tue Mar 31 2020 04:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.46956 * 2 1 4 4 C 1.52995 * 109.47556 * 120.00412 * 2 1 3 5 5 N 1.46906 * 109.46759 * 295.00244 * 4 2 1 6 6 C 1.46903 * 110.99955 * 179.97438 * 5 4 2 7 7 C 1.50693 * 109.47348 * 179.97438 * 6 5 4 8 8 O 1.21293 * 120.00058 * 0.02562 * 7 6 5 9 9 N 1.34780 * 120.00248 * 179.97438 * 7 6 5 10 10 C 1.37094 * 120.00159 * 180.02562 * 9 7 6 11 11 H 1.08000 * 120.00353 * 0.02562 * 10 9 7 12 12 C 1.38953 * 120.00283 * 179.97438 * 10 9 7 13 13 N 1.31415 * 119.99568 * 0.02562 * 12 10 9 14 14 Si 1.86791 * 120.00264 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47420 * 90.00183 * 14 12 10 16 16 H 1.48501 * 109.47079 * 210.00037 * 14 12 10 17 17 H 1.48500 * 109.47222 * 330.00159 * 14 12 10 18 18 C 1.52999 * 109.47277 * 240.00650 * 2 1 3 19 19 N 1.46504 * 109.47417 * 64.99424 * 18 2 1 20 20 C 1.34776 * 120.00350 * 180.02562 * 19 18 2 21 21 O 1.21277 * 119.99422 * 0.02562 * 20 19 18 22 22 C 1.50696 * 120.00044 * 180.02562 * 20 19 18 23 23 H 1.09002 * 109.52564 * 55.00191 * 22 20 19 24 24 C 1.53142 * 109.57817 * 294.83652 * 22 20 19 25 25 O 1.43076 * 109.15309 * 184.75656 * 24 22 20 26 26 C 1.43071 * 113.59272 * 57.94704 * 25 24 22 27 27 C 1.53142 * 109.15400 * 302.05246 * 26 25 24 28 28 O 1.43071 * 109.14896 * 55.31231 * 27 26 25 29 29 H 1.09003 * 109.47349 * 299.99281 * 1 2 3 30 30 H 1.09001 * 109.47847 * 59.99470 * 1 2 3 31 31 H 1.09001 * 109.46956 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47494 * 54.99741 * 4 2 1 33 33 H 1.09003 * 109.47491 * 175.00713 * 4 2 1 34 34 H 1.00897 * 110.99944 * 303.94864 * 5 4 2 35 35 H 1.09000 * 109.46902 * 300.00534 * 6 5 4 36 36 H 1.09004 * 109.46987 * 59.99884 * 6 5 4 37 37 H 0.96999 * 119.99541 * 0.02562 * 9 7 6 38 38 H 0.96998 * 119.99977 * 179.97438 * 13 12 10 39 39 H 1.09000 * 109.46970 * 304.99549 * 18 2 1 40 40 H 1.09002 * 109.47039 * 184.99596 * 18 2 1 41 41 H 0.97004 * 119.99610 * 0.02562 * 19 18 2 42 42 H 1.09004 * 109.52211 * 304.65589 * 24 22 20 43 43 H 1.08996 * 109.52384 * 64.85111 * 24 22 20 44 44 H 1.09001 * 109.52532 * 182.14605 * 26 25 24 45 45 H 1.09001 * 109.57305 * 61.98897 * 26 25 24 46 46 H 1.08994 * 109.52217 * 295.40909 * 27 26 25 47 47 H 1.09000 * 109.52128 * 175.21003 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 1.6513 0.0373 2.4456 6 6 2.1248 -0.6272 3.6671 7 6 1.7088 0.1784 4.8708 8 8 1.0794 1.2050 4.7254 9 7 2.0353 -0.2423 6.1089 10 6 1.6564 0.4904 7.2040 11 1 1.0960 1.4045 7.0746 12 6 1.9925 0.0564 8.4805 13 7 2.6739 -1.0561 8.6380 14 14 1.4756 1.0543 9.9725 15 1 0.1419 0.5955 10.4372 16 1 2.4694 0.8691 11.0603 17 1 1.4047 2.4917 9.6063 18 6 2.0400 -0.7211 -1.2493 19 7 1.6523 0.0355 -2.4424 20 6 1.9954 -0.4133 -3.6661 21 8 2.6247 -1.4438 -3.7794 22 6 1.5972 0.3654 -4.8933 23 1 1.9572 1.3906 -4.8070 24 6 0.0716 0.3681 -5.0266 25 8 -0.2915 1.0129 -6.2511 26 6 0.2800 0.4017 -7.4115 27 6 1.8056 0.3989 -7.2782 28 8 2.1686 -0.2460 -6.0538 29 1 -0.3634 0.5137 0.8901 30 1 -0.3635 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6055 -1.7198 1.2951 33 1 3.1264 -0.7994 1.2055 34 1 1.9881 0.9872 2.3967 35 1 1.6905 -1.6251 3.7295 36 1 3.2117 -0.7051 3.6404 37 1 2.5383 -1.0635 6.2252 38 1 2.9089 -1.3589 9.5291 39 1 1.6054 -1.7197 -1.2953 40 1 3.1263 -0.7992 -1.2056 41 1 1.1487 0.8596 -2.3517 42 1 -0.2954 -0.6583 -5.0327 43 1 -0.3665 0.9076 -4.1869 44 1 -0.0071 0.9655 -8.2991 45 1 -0.0799 -0.6235 -7.4990 46 1 2.1726 1.4253 -7.2721 47 1 2.2437 -0.1406 -8.1179 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698742113.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:46:54 Heat of formation + Delta-G solvation = -164.092938 kcal Electronic energy + Delta-G solvation = -27394.813175 eV Core-core repulsion = 23191.702448 eV Total energy + Delta-G solvation = -4203.110727 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.96014 -39.45594 -38.38003 -37.27133 -36.50622 -34.96756 -33.89461 -32.88515 -31.82762 -31.19466 -28.88177 -27.43185 -26.75392 -25.52952 -24.70528 -23.18216 -22.28136 -21.01451 -20.51543 -19.22288 -18.14242 -17.84497 -17.55996 -17.08022 -16.55493 -16.28550 -16.03079 -15.79391 -15.61582 -15.22560 -15.17486 -14.70243 -14.36528 -14.21888 -13.97732 -13.71592 -13.62235 -13.39915 -13.22163 -12.86369 -12.61558 -12.41554 -12.19899 -11.95698 -11.70099 -11.52819 -11.42240 -11.19376 -11.18378 -11.08955 -11.00589 -10.92206 -10.40196 -10.22818 -10.15683 -9.76827 -9.51735 -9.44588 -8.47848 -8.07639 -7.96746 -6.42489 -3.83408 2.14823 2.31677 3.07981 3.17358 3.26056 3.31672 3.40023 3.89922 3.91346 4.06369 4.19511 4.27640 4.30509 4.38137 4.51364 4.62435 4.65974 4.75958 4.84008 4.90566 4.98059 5.14983 5.15134 5.18089 5.24847 5.28702 5.42286 5.52772 5.64056 5.72180 5.83078 5.84954 5.95545 5.97236 6.14122 6.25673 6.31102 6.33508 6.36103 7.05113 7.17296 7.54386 7.62581 7.79008 8.05418 8.60336 9.17003 9.53522 10.04801 10.75215 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.042981 B = 0.001523 C = 0.001489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.298274 B =18375.461185 C =18796.043512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.100 4.100 3 H 0.078 0.922 4 C 0.066 3.934 5 N -0.666 5.666 6 C 0.051 3.949 7 C 0.441 3.559 8 O -0.584 6.584 9 N -0.564 5.564 10 C -0.300 4.300 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.901 5.901 14 Si 0.931 3.069 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.270 1.270 18 C 0.125 3.875 19 N -0.723 5.723 20 C 0.521 3.479 21 O -0.514 6.514 22 C 0.037 3.963 23 H 0.095 0.905 24 C 0.037 3.963 25 O -0.372 6.372 26 C 0.020 3.980 27 C 0.023 3.977 28 O -0.351 6.351 29 H 0.078 0.922 30 H 0.044 0.956 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.030 0.970 34 H 0.348 0.652 35 H 0.086 0.914 36 H 0.043 0.957 37 H 0.392 0.608 38 H 0.271 0.729 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.402 0.598 42 H 0.070 0.930 43 H 0.112 0.888 44 H 0.109 0.891 45 H 0.065 0.935 46 H 0.064 0.936 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.058 1.424 -29.921 30.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 H 0.096 0.904 4 C -0.065 4.065 5 N -0.298 5.298 6 C -0.082 4.082 7 C 0.226 3.774 8 O -0.468 6.468 9 N -0.200 5.200 10 C -0.430 4.430 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.758 3.242 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.194 1.194 18 C 0.001 3.999 19 N -0.377 5.377 20 C 0.304 3.696 21 O -0.388 6.388 22 C -0.025 4.025 23 H 0.113 0.887 24 C -0.040 4.040 25 O -0.291 6.291 26 C -0.057 4.057 27 C -0.054 4.054 28 O -0.269 6.269 29 H 0.097 0.903 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.048 0.952 34 H 0.168 0.832 35 H 0.104 0.896 36 H 0.061 0.939 37 H 0.225 0.775 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.237 0.763 42 H 0.088 0.912 43 H 0.130 0.870 44 H 0.127 0.873 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.565 0.971 -29.878 30.003 hybrid contribution 0.896 0.459 0.853 1.320 sum -1.670 1.431 -29.024 29.107 Atomic orbital electron populations 1.21769 0.93646 1.02254 1.02141 1.21348 0.97683 1.00014 0.92865 0.90401 1.21894 0.97395 0.97991 0.89179 1.60036 1.64168 1.05835 0.99778 1.21665 0.97774 0.98658 0.90091 1.19806 0.85566 0.87935 0.84089 1.90517 1.44142 1.26435 1.85749 1.41866 1.49483 1.24216 1.04446 1.19706 1.32924 1.06731 0.83626 0.87916 1.25266 0.96891 0.96654 0.99119 1.69614 1.38856 1.21729 1.24072 0.85850 0.78180 0.79901 0.80307 1.20386 1.20943 1.19440 1.21454 1.00275 0.95459 0.82670 1.45914 1.58165 1.28174 1.05429 1.19880 0.80132 0.85727 0.83821 1.90756 1.38266 1.23521 1.86247 1.22587 0.95213 0.97712 0.86953 0.88705 1.23151 0.92472 0.99833 0.88565 1.88137 1.71494 1.55427 1.14016 1.23338 0.93443 0.99661 0.89262 1.23367 0.95344 0.99112 0.87564 1.88240 1.71021 1.54675 1.12921 0.90305 0.93741 0.92701 0.90674 0.95220 0.83232 0.89569 0.93866 0.77450 0.91866 0.90911 0.91203 0.76301 0.91216 0.86967 0.87282 0.91685 0.91724 0.87038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.95 37.15 0.33 -0.95 16 2 C -0.10 -0.88 2.57 -90.63 -0.23 -1.11 16 3 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 4 C 0.07 0.73 5.07 -3.82 -0.02 0.71 16 5 N -0.67 -9.98 5.58 -115.06 -0.64 -10.62 16 6 C 0.05 0.87 6.17 -4.98 -0.03 0.84 16 7 C 0.44 10.24 7.82 -10.99 -0.09 10.16 16 8 O -0.58 -15.60 15.78 5.55 0.09 -15.51 16 9 N -0.56 -14.19 5.29 -10.97 -0.06 -14.25 16 10 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 11 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 12 C 0.02 0.60 5.50 -17.46 -0.10 0.50 16 13 N -0.90 -24.45 13.05 55.50 0.72 -23.72 16 14 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 15 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 16 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 17 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 18 C 0.12 1.08 5.06 -4.04 -0.02 1.06 16 19 N -0.72 -5.44 5.25 -60.29 -0.32 -5.76 16 20 C 0.52 5.23 7.18 -10.99 -0.08 5.15 16 21 O -0.51 -7.56 16.51 -14.25 -0.24 -7.80 16 22 C 0.04 0.29 3.25 -27.81 -0.09 0.20 16 23 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 24 C 0.04 0.24 6.30 37.23 0.23 0.48 16 25 O -0.37 -2.74 10.85 -48.80 -0.53 -3.27 16 26 C 0.02 0.10 7.05 37.23 0.26 0.37 16 27 C 0.02 0.13 7.05 37.23 0.26 0.40 16 28 O -0.35 -3.43 10.03 -62.51 -0.63 -4.05 16 29 H 0.08 0.92 7.75 -51.93 -0.40 0.51 16 30 H 0.04 0.31 7.18 -51.93 -0.37 -0.06 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.35 5.39 8.43 -39.29 -0.33 5.06 16 35 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 38 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.40 1.98 7.58 -40.82 -0.31 1.67 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.11 0.47 8.07 -51.93 -0.42 0.06 16 44 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 391.23 15.07 5.90 5.90 Total: -1.00 -35.24 391.23 -8.02 -43.26 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -7.59 Total: 10.59 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: 0.29 Total: 9.30 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: -0.29 Total: -54.35 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: -1.30 Total: -30.63 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.24 -8.02 -43.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698742113.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.834 kcal (2) G-P(sol) polarization free energy of solvation -35.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds