Wall clock time and date at job start Tue Mar 31 2020 04:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.46956 * 2 1 4 4 C 1.52995 * 109.47556 * 120.00412 * 2 1 3 5 5 N 1.46906 * 109.46759 * 295.00244 * 4 2 1 6 6 C 1.46903 * 110.99955 * 179.97438 * 5 4 2 7 7 C 1.50693 * 109.47348 * 179.97438 * 6 5 4 8 8 O 1.21293 * 120.00058 * 0.02562 * 7 6 5 9 9 N 1.34780 * 120.00248 * 179.97438 * 7 6 5 10 10 C 1.37094 * 120.00159 * 180.02562 * 9 7 6 11 11 H 1.08000 * 120.00353 * 0.02562 * 10 9 7 12 12 C 1.38953 * 120.00283 * 179.97438 * 10 9 7 13 13 N 1.31415 * 119.99568 * 0.02562 * 12 10 9 14 14 Si 1.86791 * 120.00264 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47420 * 90.00183 * 14 12 10 16 16 H 1.48501 * 109.47079 * 210.00037 * 14 12 10 17 17 H 1.48500 * 109.47222 * 330.00159 * 14 12 10 18 18 C 1.52999 * 109.47277 * 240.00650 * 2 1 3 19 19 N 1.46504 * 109.47417 * 64.99424 * 18 2 1 20 20 C 1.34776 * 120.00350 * 180.02562 * 19 18 2 21 21 O 1.21277 * 119.99422 * 0.02562 * 20 19 18 22 22 C 1.50696 * 120.00044 * 180.02562 * 20 19 18 23 23 H 1.09002 * 109.52564 * 55.00191 * 22 20 19 24 24 C 1.53142 * 109.57817 * 294.83652 * 22 20 19 25 25 O 1.43076 * 109.15309 * 184.75656 * 24 22 20 26 26 C 1.43071 * 113.59272 * 57.94704 * 25 24 22 27 27 C 1.53142 * 109.15400 * 302.05246 * 26 25 24 28 28 O 1.43071 * 109.14896 * 55.31231 * 27 26 25 29 29 H 1.09003 * 109.47349 * 299.99281 * 1 2 3 30 30 H 1.09001 * 109.47847 * 59.99470 * 1 2 3 31 31 H 1.09001 * 109.46956 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47494 * 54.99741 * 4 2 1 33 33 H 1.09003 * 109.47491 * 175.00713 * 4 2 1 34 34 H 1.00897 * 110.99944 * 303.94864 * 5 4 2 35 35 H 1.09000 * 109.46902 * 300.00534 * 6 5 4 36 36 H 1.09004 * 109.46987 * 59.99884 * 6 5 4 37 37 H 0.96999 * 119.99541 * 0.02562 * 9 7 6 38 38 H 0.96998 * 119.99977 * 179.97438 * 13 12 10 39 39 H 1.09000 * 109.46970 * 304.99549 * 18 2 1 40 40 H 1.09002 * 109.47039 * 184.99596 * 18 2 1 41 41 H 0.97004 * 119.99610 * 0.02562 * 19 18 2 42 42 H 1.09004 * 109.52211 * 304.65589 * 24 22 20 43 43 H 1.08996 * 109.52384 * 64.85111 * 24 22 20 44 44 H 1.09001 * 109.52532 * 182.14605 * 26 25 24 45 45 H 1.09001 * 109.57305 * 61.98897 * 26 25 24 46 46 H 1.08994 * 109.52217 * 295.40909 * 27 26 25 47 47 H 1.09000 * 109.52128 * 175.21003 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 1.6513 0.0373 2.4456 6 6 2.1248 -0.6272 3.6671 7 6 1.7088 0.1784 4.8708 8 8 1.0794 1.2050 4.7254 9 7 2.0353 -0.2423 6.1089 10 6 1.6564 0.4904 7.2040 11 1 1.0960 1.4045 7.0746 12 6 1.9925 0.0564 8.4805 13 7 2.6739 -1.0561 8.6380 14 14 1.4756 1.0543 9.9725 15 1 0.1419 0.5955 10.4372 16 1 2.4694 0.8691 11.0603 17 1 1.4047 2.4917 9.6063 18 6 2.0400 -0.7211 -1.2493 19 7 1.6523 0.0355 -2.4424 20 6 1.9954 -0.4133 -3.6661 21 8 2.6247 -1.4438 -3.7794 22 6 1.5972 0.3654 -4.8933 23 1 1.9572 1.3906 -4.8070 24 6 0.0716 0.3681 -5.0266 25 8 -0.2915 1.0129 -6.2511 26 6 0.2800 0.4017 -7.4115 27 6 1.8056 0.3989 -7.2782 28 8 2.1686 -0.2460 -6.0538 29 1 -0.3634 0.5137 0.8901 30 1 -0.3635 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6055 -1.7198 1.2951 33 1 3.1264 -0.7994 1.2055 34 1 1.9881 0.9872 2.3967 35 1 1.6905 -1.6251 3.7295 36 1 3.2117 -0.7051 3.6404 37 1 2.5383 -1.0635 6.2252 38 1 2.9089 -1.3589 9.5291 39 1 1.6054 -1.7197 -1.2953 40 1 3.1263 -0.7992 -1.2056 41 1 1.1487 0.8596 -2.3517 42 1 -0.2954 -0.6583 -5.0327 43 1 -0.3665 0.9076 -4.1869 44 1 -0.0071 0.9655 -8.2991 45 1 -0.0799 -0.6235 -7.4990 46 1 2.1726 1.4253 -7.2721 47 1 2.2437 -0.1406 -8.1179 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698742113.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:46:53 Heat of formation + Delta-G solvation = -192.768569 kcal Electronic energy + Delta-G solvation = -27396.056644 eV Core-core repulsion = 23191.702448 eV Total energy + Delta-G solvation = -4204.354196 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.59156 -40.22971 -40.04282 -38.26819 -37.09552 -36.18962 -35.67176 -33.77070 -33.22672 -32.44325 -29.46530 -28.76149 -27.51374 -26.60180 -25.87625 -24.35896 -22.83874 -21.76635 -21.39687 -20.90550 -19.89147 -18.76901 -18.17517 -17.78936 -17.60872 -17.04319 -16.96088 -16.79865 -16.48002 -16.37943 -16.06952 -16.03575 -15.75003 -15.29496 -15.16860 -14.84205 -14.58402 -14.33491 -14.12582 -13.91597 -13.56709 -13.40478 -13.26317 -13.14362 -12.99871 -12.83539 -12.65774 -12.41161 -12.11951 -12.00776 -12.00243 -11.89813 -11.70161 -11.64649 -11.49675 -10.91550 -10.34041 -10.32204 -10.17203 -10.00795 -9.28565 -8.46081 -5.94893 1.38810 1.39639 1.42605 1.55246 1.67931 2.06414 2.29869 2.62700 2.82541 2.99167 3.21474 3.40578 3.53798 3.60765 3.82342 3.88112 3.94470 3.98589 4.07125 4.11948 4.23502 4.33910 4.46271 4.49210 4.51022 4.52648 4.59490 4.64061 4.76797 4.77203 4.79200 4.86016 4.97690 5.10714 5.22248 5.38966 5.41568 5.56907 5.82998 5.86544 5.89494 6.10930 6.40860 6.45231 6.60738 7.09088 7.13237 7.57254 8.12261 8.71284 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.042981 B = 0.001523 C = 0.001489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.298274 B =18375.461185 C =18796.043512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.087 4.087 3 H 0.087 0.913 4 C 0.065 3.935 5 N -0.676 5.676 6 C 0.065 3.935 7 C 0.438 3.562 8 O -0.622 6.622 9 N -0.574 5.574 10 C -0.335 4.335 11 H 0.080 0.920 12 C -0.013 4.013 13 N -0.921 5.921 14 Si 0.993 3.007 15 H -0.271 1.271 16 H -0.271 1.271 17 H -0.272 1.272 18 C 0.132 3.868 19 N -0.706 5.706 20 C 0.520 3.480 21 O -0.568 6.568 22 C 0.039 3.961 23 H 0.116 0.884 24 C 0.040 3.960 25 O -0.384 6.384 26 C 0.017 3.983 27 C 0.019 3.981 28 O -0.386 6.386 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.078 0.922 33 H 0.040 0.960 34 H 0.345 0.655 35 H 0.102 0.898 36 H 0.065 0.935 37 H 0.396 0.604 38 H 0.277 0.723 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.417 0.583 42 H 0.059 0.941 43 H 0.137 0.863 44 H 0.133 0.867 45 H 0.061 0.939 46 H 0.075 0.925 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.270 2.034 -30.806 30.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.106 4.106 3 H 0.105 0.895 4 C -0.064 4.064 5 N -0.309 5.309 6 C -0.068 4.068 7 C 0.226 3.774 8 O -0.509 6.509 9 N -0.211 5.211 10 C -0.464 4.464 11 H 0.098 0.902 12 C -0.213 4.213 13 N -0.562 5.562 14 Si 0.817 3.183 15 H -0.197 1.197 16 H -0.196 1.196 17 H -0.197 1.197 18 C 0.007 3.993 19 N -0.360 5.360 20 C 0.306 3.694 21 O -0.446 6.446 22 C -0.022 4.022 23 H 0.134 0.866 24 C -0.037 4.037 25 O -0.303 6.303 26 C -0.060 4.060 27 C -0.057 4.057 28 O -0.305 6.305 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.059 0.941 34 H 0.164 0.836 35 H 0.120 0.880 36 H 0.083 0.917 37 H 0.230 0.770 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.255 0.745 42 H 0.077 0.923 43 H 0.154 0.846 44 H 0.151 0.849 45 H 0.079 0.921 46 H 0.093 0.907 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.792 1.592 -30.774 30.941 hybrid contribution 0.955 0.272 1.044 1.441 sum -1.837 1.863 -29.730 29.845 Atomic orbital electron populations 1.21728 0.93680 1.02024 1.02088 1.21204 0.97431 1.00160 0.91797 0.89518 1.21977 0.98202 0.97866 0.88355 1.60030 1.64655 1.05948 1.00222 1.21522 0.99067 0.98041 0.88154 1.20889 0.83856 0.87628 0.85069 1.90485 1.45528 1.28328 1.86509 1.41945 1.50074 1.24338 1.04790 1.19684 1.34445 1.06996 0.85325 0.90234 1.26042 0.96430 0.97575 1.01224 1.69675 1.38974 1.22488 1.25023 0.84920 0.78211 0.78176 0.76983 1.19697 1.19605 1.19698 1.21302 0.99845 0.95278 0.82830 1.45771 1.57380 1.28354 1.04535 1.20328 0.79138 0.85089 0.84873 1.90729 1.40892 1.25918 1.87024 1.22656 0.96074 0.97882 0.85573 0.86627 1.23204 0.91471 0.99747 0.89297 1.88120 1.71749 1.55836 1.14601 1.23498 0.93050 0.99910 0.89502 1.23588 0.95817 0.99702 0.86605 1.88191 1.71824 1.56054 1.14394 0.92814 0.91313 0.93043 0.90359 0.94136 0.83647 0.87960 0.91698 0.77013 0.91332 0.91563 0.91807 0.74464 0.92256 0.84565 0.84891 0.92065 0.90663 0.85640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 8.95 71.98 0.64 -1.64 16 2 C -0.09 -1.37 2.57 -10.80 -0.03 -1.40 16 3 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 4 C 0.07 1.33 5.07 86.30 0.44 1.77 16 5 N -0.68 -19.49 5.58 -517.93 -2.89 -22.38 16 6 C 0.06 2.13 6.17 85.55 0.53 2.66 16 7 C 0.44 20.49 7.82 87.65 0.69 21.17 16 8 O -0.62 -33.81 15.78 -3.07 -0.05 -33.86 16 9 N -0.57 -29.28 5.29 -306.99 -1.62 -30.91 16 10 C -0.33 -18.96 9.68 84.04 0.81 -18.15 16 11 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 12 C -0.01 -0.69 5.50 84.93 0.47 -0.23 16 13 N -0.92 -49.59 13.05 21.66 0.28 -49.31 16 14 Si 0.99 42.73 29.55 68.60 2.03 44.76 16 15 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 16 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 17 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 18 C 0.13 2.09 5.06 86.38 0.44 2.52 16 19 N -0.71 -9.39 5.25 -463.06 -2.43 -11.82 16 20 C 0.52 10.00 7.18 87.66 0.63 10.63 16 21 O -0.57 -16.85 16.51 15.92 0.26 -16.59 16 22 C 0.04 0.57 3.25 29.89 0.10 0.67 16 23 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 24 C 0.04 0.46 6.30 72.03 0.45 0.91 16 25 O -0.38 -4.95 10.85 -136.00 -1.48 -6.42 16 26 C 0.02 0.15 7.05 72.03 0.51 0.66 16 27 C 0.02 0.19 7.05 72.03 0.51 0.70 16 28 O -0.39 -7.30 10.03 -122.90 -1.23 -8.53 16 29 H 0.05 1.20 7.75 -2.39 -0.02 1.18 16 30 H 0.07 0.78 7.18 -2.39 -0.02 0.77 16 31 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.34 10.37 8.43 -89.70 -0.76 9.61 16 35 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 36 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.40 19.21 7.90 -92.71 -0.73 18.48 16 38 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 39 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.42 2.98 7.58 -92.70 -0.70 2.27 16 42 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 43 H 0.14 0.78 8.07 -2.39 -0.02 0.76 16 44 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 47 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -77.63 391.23 -2.13 -79.77 By element: Atomic # 1 Polarization: 36.20 SS G_CDS: -1.19 Total: 35.01 kcal Atomic # 6 Polarization: 14.10 SS G_CDS: 6.18 Total: 20.28 kcal Atomic # 7 Polarization: -107.76 SS G_CDS: -6.66 Total: -114.42 kcal Atomic # 8 Polarization: -62.91 SS G_CDS: -2.49 Total: -65.41 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -77.63 -2.13 -79.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698742113.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.002 kcal (2) G-P(sol) polarization free energy of solvation -77.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds