Wall clock time and date at job start Tue Mar 31 2020 04:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.47327 * 2 1 4 4 C 1.53004 * 109.46921 * 120.00028 * 2 1 3 5 5 N 1.46901 * 109.46916 * 294.99594 * 4 2 1 6 6 C 1.46905 * 110.99870 * 180.02562 * 5 4 2 7 7 C 1.50697 * 109.47066 * 180.02562 * 6 5 4 8 8 O 1.21297 * 120.00124 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00196 * 180.02562 * 7 6 5 10 10 C 1.37100 * 120.00290 * 180.02562 * 9 7 6 11 11 H 1.07990 * 119.99768 * 359.97438 * 10 9 7 12 12 C 1.38956 * 119.99812 * 180.02562 * 10 9 7 13 13 N 1.31406 * 120.00264 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 119.99477 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46852 * 90.00344 * 14 12 10 16 16 H 1.48501 * 109.46586 * 209.99698 * 14 12 10 17 17 H 1.48495 * 109.47035 * 329.99964 * 14 12 10 18 18 C 1.52997 * 109.47022 * 239.99474 * 2 1 3 19 19 N 1.46503 * 109.47146 * 65.00373 * 18 2 1 20 20 C 1.34776 * 120.00148 * 179.97438 * 19 18 2 21 21 O 1.21274 * 119.99944 * 0.02562 * 20 19 18 22 22 C 1.50703 * 119.99732 * 180.02562 * 20 19 18 23 23 H 1.09007 * 109.52136 * 304.99797 * 22 20 19 24 24 C 1.53134 * 109.52360 * 65.13159 * 22 20 19 25 25 O 1.43091 * 109.14372 * 175.14292 * 24 22 20 26 26 C 1.43074 * 113.65003 * 302.15660 * 25 24 22 27 27 C 1.53141 * 109.15527 * 57.90817 * 26 25 24 28 28 O 1.43073 * 109.15118 * 304.69290 * 27 26 25 29 29 H 1.09010 * 109.47245 * 300.00418 * 1 2 3 30 30 H 1.08999 * 109.47135 * 59.99761 * 1 2 3 31 31 H 1.08997 * 109.47560 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46889 * 174.99975 * 4 2 1 33 33 H 1.08995 * 109.47384 * 54.99615 * 4 2 1 34 34 H 1.00901 * 111.00067 * 303.95263 * 5 4 2 35 35 H 1.09001 * 109.46798 * 300.00327 * 6 5 4 36 36 H 1.08998 * 109.46961 * 60.00043 * 6 5 4 37 37 H 0.97009 * 119.99629 * 359.97438 * 9 7 6 38 38 H 0.96997 * 120.00444 * 179.97438 * 13 12 10 39 39 H 1.09008 * 109.47139 * 185.00096 * 18 2 1 40 40 H 1.09001 * 109.47414 * 305.00040 * 18 2 1 41 41 H 0.96998 * 119.99695 * 0.02562 * 19 18 2 42 42 H 1.08998 * 109.53086 * 295.11436 * 24 22 20 43 43 H 1.08997 * 109.52399 * 55.31594 * 24 22 20 44 44 H 1.09004 * 109.52210 * 298.00843 * 26 25 24 45 45 H 1.09003 * 109.58259 * 177.84759 * 26 25 24 46 46 H 1.08994 * 109.52687 * 184.78575 * 27 26 25 47 47 H 1.09007 * 109.57060 * 64.62623 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.6513 0.0375 2.4456 6 6 2.1257 -0.6265 3.6672 7 6 1.7086 0.1787 4.8709 8 8 1.0779 1.2045 4.7255 9 7 2.0365 -0.2409 6.1089 10 6 1.6567 0.4913 7.2040 11 1 1.0951 1.4046 7.0745 12 6 1.9953 0.0589 8.4804 13 7 2.6790 -1.0522 8.6379 14 14 1.4783 1.0570 9.9724 15 1 0.1460 0.5959 10.4390 16 1 2.4738 0.8745 11.0591 17 1 1.4042 2.4939 9.6051 18 6 2.0399 -0.7214 -1.2492 19 7 1.6524 0.0352 -2.4424 20 6 1.9964 -0.4133 -3.6659 21 8 2.6263 -1.4434 -3.7791 22 6 1.5982 0.3653 -4.8932 23 1 0.5193 0.5206 -4.8919 24 6 2.3105 1.7209 -4.8927 25 8 2.0166 2.4059 -6.1141 26 6 2.3933 1.6767 -7.2861 27 6 1.6797 0.3216 -7.2857 28 8 1.9749 -0.3639 -6.0651 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1262 -0.7995 1.2056 33 1 1.6052 -1.7198 1.2953 34 1 1.9882 0.9873 2.3966 35 1 1.6919 -1.6245 3.7301 36 1 3.2126 -0.7037 3.6401 37 1 2.5407 -1.0615 6.2252 38 1 2.9157 -1.3539 9.5289 39 1 3.1263 -0.7996 -1.2055 40 1 1.6053 -1.7199 -1.2950 41 1 1.1489 0.8593 -2.3518 42 1 1.9625 2.3151 -4.0478 43 1 3.3866 1.5670 -4.8124 44 1 3.4720 1.5203 -7.2868 45 1 2.1062 2.2393 -8.1744 46 1 2.0267 -0.2730 -8.1307 47 1 0.6036 0.4756 -7.3661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698742114.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:46:58 Heat of formation + Delta-G solvation = -164.060108 kcal Electronic energy + Delta-G solvation = -27383.860512 eV Core-core repulsion = 23180.751209 eV Total energy + Delta-G solvation = -4203.109304 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.95920 -39.45535 -38.37971 -37.27026 -36.50633 -34.96833 -33.89456 -32.89059 -31.82334 -31.19538 -28.88042 -27.42735 -26.76913 -25.51870 -24.70692 -23.18003 -22.28175 -21.00253 -20.53396 -19.22348 -18.13542 -17.84459 -17.55016 -17.08286 -16.59714 -16.23309 -16.02782 -15.82112 -15.62623 -15.32767 -15.03373 -14.66210 -14.39383 -14.30890 -13.94543 -13.73220 -13.58523 -13.37721 -13.23750 -12.85214 -12.63885 -12.42389 -12.19139 -11.95139 -11.69907 -11.52779 -11.42102 -11.20161 -11.17317 -11.08961 -11.00609 -10.92178 -10.40227 -10.22892 -10.15562 -9.76965 -9.51737 -9.44606 -8.47834 -8.07706 -7.96799 -6.42484 -3.83441 2.14770 2.31752 3.07399 3.17361 3.26031 3.31662 3.39953 3.89958 3.91209 4.06318 4.19500 4.27611 4.30426 4.38002 4.51244 4.61968 4.66363 4.76396 4.84012 4.90034 4.97899 5.14833 5.15198 5.17975 5.24840 5.28901 5.41900 5.53036 5.64497 5.72154 5.83458 5.85272 5.95633 5.97206 6.14211 6.25648 6.31038 6.33599 6.36340 7.05119 7.17237 7.54364 7.62492 7.79009 8.05457 8.60313 9.16990 9.53519 10.04789 10.75209 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.038859 B = 0.001531 C = 0.001502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.373080 B =18286.361444 C =18641.193243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.100 4.100 3 H 0.078 0.922 4 C 0.066 3.934 5 N -0.666 5.666 6 C 0.051 3.949 7 C 0.441 3.559 8 O -0.584 6.584 9 N -0.564 5.564 10 C -0.300 4.300 11 H 0.103 0.897 12 C 0.023 3.977 13 N -0.901 5.901 14 Si 0.930 3.070 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.270 1.270 18 C 0.125 3.875 19 N -0.723 5.723 20 C 0.521 3.479 21 O -0.514 6.514 22 C 0.037 3.963 23 H 0.096 0.904 24 C 0.037 3.963 25 O -0.373 6.373 26 C 0.020 3.980 27 C 0.023 3.977 28 O -0.350 6.350 29 H 0.078 0.922 30 H 0.044 0.956 31 H 0.054 0.946 32 H 0.030 0.970 33 H 0.075 0.925 34 H 0.348 0.652 35 H 0.086 0.914 36 H 0.043 0.957 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.402 0.598 42 H 0.112 0.888 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.109 0.891 46 H 0.112 0.888 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.479 2.375 -29.828 29.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 H 0.096 0.904 4 C -0.065 4.065 5 N -0.298 5.298 6 C -0.082 4.082 7 C 0.226 3.774 8 O -0.468 6.468 9 N -0.200 5.200 10 C -0.430 4.430 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.757 3.243 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.194 1.194 18 C 0.001 3.999 19 N -0.377 5.377 20 C 0.304 3.696 21 O -0.388 6.388 22 C -0.025 4.025 23 H 0.113 0.887 24 C -0.040 4.040 25 O -0.291 6.291 26 C -0.057 4.057 27 C -0.054 4.054 28 O -0.268 6.268 29 H 0.097 0.903 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.048 0.952 33 H 0.093 0.907 34 H 0.168 0.832 35 H 0.104 0.896 36 H 0.061 0.939 37 H 0.226 0.774 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.237 0.763 42 H 0.130 0.870 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.127 0.873 46 H 0.130 0.870 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.986 1.923 -29.785 29.863 hybrid contribution 0.796 0.398 0.847 1.229 sum -0.189 2.321 -28.937 29.031 Atomic orbital electron populations 1.21770 0.93652 1.02270 1.02140 1.21347 0.97688 0.99992 0.92863 0.90396 1.21896 0.97387 0.98001 0.89181 1.60048 1.64139 1.05832 0.99780 1.21668 0.97762 0.98675 0.90097 1.19805 0.85568 0.87934 0.84088 1.90518 1.44101 1.26477 1.85749 1.41869 1.49397 1.24296 1.04451 1.19707 1.32841 1.06819 0.83629 0.87913 1.25264 0.96875 0.96657 0.99115 1.69608 1.38753 1.21825 1.24081 0.85854 0.78181 0.79908 0.80316 1.20383 1.20942 1.19438 1.21456 1.00238 0.95502 0.82668 1.45913 1.58209 1.28128 1.05433 1.19884 0.80085 0.85778 0.83820 1.90755 1.38229 1.23599 1.86207 1.22586 1.00678 0.92366 0.86829 0.88679 1.23154 1.00409 0.91883 0.88578 1.88132 1.84034 1.43349 1.13587 1.23337 0.99807 0.93410 0.89128 1.23366 1.00292 0.94105 0.87629 1.88242 1.83780 1.42410 1.12414 0.90317 0.93718 0.92710 0.95219 0.90674 0.83244 0.89575 0.93856 0.77450 0.91861 0.91197 0.90915 0.76301 0.86954 0.91252 0.91701 0.87265 0.87045 0.91714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.95 37.15 0.33 -0.98 16 2 C -0.10 -0.88 2.57 -90.62 -0.23 -1.11 16 3 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 4 C 0.07 0.73 5.07 -3.82 -0.02 0.71 16 5 N -0.67 -9.97 5.58 -115.05 -0.64 -10.61 16 6 C 0.05 0.87 6.17 -4.97 -0.03 0.83 16 7 C 0.44 10.24 7.82 -10.99 -0.09 10.16 16 8 O -0.58 -15.60 15.78 5.54 0.09 -15.51 16 9 N -0.56 -14.19 5.29 -10.96 -0.06 -14.24 16 10 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 11 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 12 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 13 N -0.90 -24.44 13.05 55.50 0.72 -23.72 16 14 Si 0.93 20.95 29.55 -169.99 -5.02 15.92 16 15 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 17 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 18 C 0.12 1.08 5.06 -4.04 -0.02 1.06 16 19 N -0.72 -5.44 5.25 -60.29 -0.32 -5.76 16 20 C 0.52 5.22 7.18 -10.98 -0.08 5.14 16 21 O -0.51 -7.56 16.51 -14.25 -0.24 -7.79 16 22 C 0.04 0.29 3.25 -27.81 -0.09 0.20 16 23 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 24 C 0.04 0.24 6.30 37.23 0.23 0.48 16 25 O -0.37 -2.75 10.85 -48.80 -0.53 -3.28 16 26 C 0.02 0.11 7.05 37.23 0.26 0.37 16 27 C 0.02 0.13 7.05 37.23 0.26 0.40 16 28 O -0.35 -3.42 10.03 -62.51 -0.63 -4.05 16 29 H 0.08 0.92 7.75 -51.92 -0.40 0.52 16 30 H 0.04 0.33 7.18 -51.93 -0.37 -0.05 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.35 5.37 8.43 -39.29 -0.33 5.04 16 35 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.39 9.45 7.90 -40.82 -0.32 9.12 16 38 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 39 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.40 1.98 7.57 -40.82 -0.31 1.67 16 42 H 0.11 0.47 8.06 -51.93 -0.42 0.05 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 391.22 15.07 5.90 5.90 Total: -1.00 -35.25 391.22 -8.02 -43.27 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -7.59 Total: 10.60 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: 0.29 Total: 9.27 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: -0.29 Total: -54.33 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: -1.30 Total: -30.64 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.25 -8.02 -43.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698742114.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.788 kcal (2) G-P(sol) polarization free energy of solvation -35.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds