Wall clock time and date at job start Tue Mar 31 2020 04:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.47327 * 2 1 4 4 C 1.53004 * 109.46921 * 120.00028 * 2 1 3 5 5 N 1.46901 * 109.46916 * 294.99594 * 4 2 1 6 6 C 1.46905 * 110.99870 * 180.02562 * 5 4 2 7 7 C 1.50697 * 109.47066 * 180.02562 * 6 5 4 8 8 O 1.21297 * 120.00124 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00196 * 180.02562 * 7 6 5 10 10 C 1.37100 * 120.00290 * 180.02562 * 9 7 6 11 11 H 1.07990 * 119.99768 * 359.97438 * 10 9 7 12 12 C 1.38956 * 119.99812 * 180.02562 * 10 9 7 13 13 N 1.31406 * 120.00264 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 119.99477 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46852 * 90.00344 * 14 12 10 16 16 H 1.48501 * 109.46586 * 209.99698 * 14 12 10 17 17 H 1.48495 * 109.47035 * 329.99964 * 14 12 10 18 18 C 1.52997 * 109.47022 * 239.99474 * 2 1 3 19 19 N 1.46503 * 109.47146 * 65.00373 * 18 2 1 20 20 C 1.34776 * 120.00148 * 179.97438 * 19 18 2 21 21 O 1.21274 * 119.99944 * 0.02562 * 20 19 18 22 22 C 1.50703 * 119.99732 * 180.02562 * 20 19 18 23 23 H 1.09007 * 109.52136 * 304.99797 * 22 20 19 24 24 C 1.53134 * 109.52360 * 65.13159 * 22 20 19 25 25 O 1.43091 * 109.14372 * 175.14292 * 24 22 20 26 26 C 1.43074 * 113.65003 * 302.15660 * 25 24 22 27 27 C 1.53141 * 109.15527 * 57.90817 * 26 25 24 28 28 O 1.43073 * 109.15118 * 304.69290 * 27 26 25 29 29 H 1.09010 * 109.47245 * 300.00418 * 1 2 3 30 30 H 1.08999 * 109.47135 * 59.99761 * 1 2 3 31 31 H 1.08997 * 109.47560 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46889 * 174.99975 * 4 2 1 33 33 H 1.08995 * 109.47384 * 54.99615 * 4 2 1 34 34 H 1.00901 * 111.00067 * 303.95263 * 5 4 2 35 35 H 1.09001 * 109.46798 * 300.00327 * 6 5 4 36 36 H 1.08998 * 109.46961 * 60.00043 * 6 5 4 37 37 H 0.97009 * 119.99629 * 359.97438 * 9 7 6 38 38 H 0.96997 * 120.00444 * 179.97438 * 13 12 10 39 39 H 1.09008 * 109.47139 * 185.00096 * 18 2 1 40 40 H 1.09001 * 109.47414 * 305.00040 * 18 2 1 41 41 H 0.96998 * 119.99695 * 0.02562 * 19 18 2 42 42 H 1.08998 * 109.53086 * 295.11436 * 24 22 20 43 43 H 1.08997 * 109.52399 * 55.31594 * 24 22 20 44 44 H 1.09004 * 109.52210 * 298.00843 * 26 25 24 45 45 H 1.09003 * 109.58259 * 177.84759 * 26 25 24 46 46 H 1.08994 * 109.52687 * 184.78575 * 27 26 25 47 47 H 1.09007 * 109.57060 * 64.62623 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.6513 0.0375 2.4456 6 6 2.1257 -0.6265 3.6672 7 6 1.7086 0.1787 4.8709 8 8 1.0779 1.2045 4.7255 9 7 2.0365 -0.2409 6.1089 10 6 1.6567 0.4913 7.2040 11 1 1.0951 1.4046 7.0745 12 6 1.9953 0.0589 8.4804 13 7 2.6790 -1.0522 8.6379 14 14 1.4783 1.0570 9.9724 15 1 0.1460 0.5959 10.4390 16 1 2.4738 0.8745 11.0591 17 1 1.4042 2.4939 9.6051 18 6 2.0399 -0.7214 -1.2492 19 7 1.6524 0.0352 -2.4424 20 6 1.9964 -0.4133 -3.6659 21 8 2.6263 -1.4434 -3.7791 22 6 1.5982 0.3653 -4.8932 23 1 0.5193 0.5206 -4.8919 24 6 2.3105 1.7209 -4.8927 25 8 2.0166 2.4059 -6.1141 26 6 2.3933 1.6767 -7.2861 27 6 1.6797 0.3216 -7.2857 28 8 1.9749 -0.3639 -6.0651 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1262 -0.7995 1.2056 33 1 1.6052 -1.7198 1.2953 34 1 1.9882 0.9873 2.3966 35 1 1.6919 -1.6245 3.7301 36 1 3.2126 -0.7037 3.6401 37 1 2.5407 -1.0615 6.2252 38 1 2.9157 -1.3539 9.5289 39 1 3.1263 -0.7996 -1.2055 40 1 1.6053 -1.7199 -1.2950 41 1 1.1489 0.8593 -2.3518 42 1 1.9625 2.3151 -4.0478 43 1 3.3866 1.5670 -4.8124 44 1 3.4720 1.5203 -7.2868 45 1 2.1062 2.2393 -8.1744 46 1 2.0267 -0.2730 -8.1307 47 1 0.6036 0.4756 -7.3661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698742114.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:46:57 Heat of formation + Delta-G solvation = -192.745359 kcal Electronic energy + Delta-G solvation = -27385.104398 eV Core-core repulsion = 23180.751209 eV Total energy + Delta-G solvation = -4204.353190 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.59095 -40.22897 -40.04189 -38.26854 -37.09568 -36.18934 -35.67142 -33.77602 -33.22753 -32.44054 -29.46563 -28.75835 -27.53404 -26.59613 -25.87230 -24.35858 -22.83769 -21.75379 -21.41124 -20.91212 -19.89105 -18.75957 -18.16582 -17.80560 -17.59057 -17.12197 -16.95020 -16.62726 -16.59312 -16.40627 -16.12685 -16.01300 -15.65494 -15.31006 -15.16122 -14.92386 -14.53827 -14.34227 -14.10963 -13.92430 -13.55701 -13.40344 -13.29469 -13.14292 -13.00080 -12.83413 -12.65316 -12.41177 -12.11968 -12.01473 -11.99909 -11.90059 -11.70717 -11.64504 -11.49628 -10.91421 -10.33788 -10.32447 -10.17253 -10.00791 -9.28439 -8.46020 -5.94864 1.38847 1.39652 1.42604 1.55270 1.67992 2.06513 2.29868 2.62105 2.82477 2.99223 3.21522 3.40447 3.53838 3.60745 3.82385 3.87784 3.94234 3.98284 4.07681 4.11477 4.23312 4.34035 4.46151 4.49175 4.50632 4.52729 4.59547 4.63900 4.76878 4.77178 4.78971 4.85544 4.97427 5.10078 5.22227 5.38705 5.41616 5.55946 5.83002 5.86336 5.89544 6.10997 6.40989 6.45484 6.60781 7.09126 7.13283 7.57329 8.12333 8.71330 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.038859 B = 0.001531 C = 0.001502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.373080 B =18286.361444 C =18641.193243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.086 4.086 3 H 0.088 0.912 4 C 0.065 3.935 5 N -0.676 5.676 6 C 0.065 3.935 7 C 0.438 3.562 8 O -0.622 6.622 9 N -0.574 5.574 10 C -0.335 4.335 11 H 0.080 0.920 12 C -0.013 4.013 13 N -0.921 5.921 14 Si 0.993 3.007 15 H -0.272 1.272 16 H -0.271 1.271 17 H -0.272 1.272 18 C 0.131 3.869 19 N -0.706 5.706 20 C 0.520 3.480 21 O -0.568 6.568 22 C 0.040 3.960 23 H 0.117 0.883 24 C 0.040 3.960 25 O -0.385 6.385 26 C 0.017 3.983 27 C 0.019 3.981 28 O -0.385 6.385 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.049 0.951 32 H 0.041 0.959 33 H 0.077 0.923 34 H 0.345 0.655 35 H 0.102 0.898 36 H 0.066 0.934 37 H 0.396 0.604 38 H 0.277 0.723 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.417 0.583 42 H 0.137 0.863 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.134 0.866 46 H 0.126 0.874 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.724 2.963 -30.709 30.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.106 4.106 3 H 0.107 0.893 4 C -0.064 4.064 5 N -0.309 5.309 6 C -0.068 4.068 7 C 0.226 3.774 8 O -0.509 6.509 9 N -0.211 5.211 10 C -0.465 4.465 11 H 0.098 0.902 12 C -0.213 4.213 13 N -0.562 5.562 14 Si 0.817 3.183 15 H -0.197 1.197 16 H -0.196 1.196 17 H -0.197 1.197 18 C 0.007 3.993 19 N -0.360 5.360 20 C 0.306 3.694 21 O -0.446 6.446 22 C -0.022 4.022 23 H 0.134 0.866 24 C -0.037 4.037 25 O -0.303 6.303 26 C -0.059 4.059 27 C -0.057 4.057 28 O -0.305 6.305 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.096 0.904 34 H 0.164 0.836 35 H 0.120 0.880 36 H 0.083 0.917 37 H 0.230 0.770 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.255 0.745 42 H 0.155 0.845 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.151 0.849 46 H 0.144 0.856 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.241 2.522 -30.676 30.805 hybrid contribution 0.857 0.213 1.036 1.362 sum -0.384 2.735 -29.640 29.768 Atomic orbital electron populations 1.21726 0.93832 1.01944 1.02026 1.21205 0.97304 1.00247 0.91804 0.89339 1.21977 0.98243 0.97834 0.88348 1.60040 1.64644 1.05963 1.00222 1.21523 0.99073 0.98040 0.88158 1.20889 0.83860 0.87623 0.85069 1.90486 1.45488 1.28371 1.86509 1.41948 1.49989 1.24418 1.04795 1.19685 1.34357 1.07088 0.85328 0.90233 1.26040 0.96418 0.97578 1.01221 1.69669 1.38872 1.22582 1.25031 0.84923 0.78209 0.78182 0.76992 1.19701 1.19603 1.19695 1.21304 0.99909 0.95224 0.82826 1.45770 1.57432 1.28299 1.04539 1.20332 0.79081 0.85151 0.84871 1.90729 1.40828 1.26022 1.86985 1.22655 1.01882 0.92207 0.85425 0.86579 1.23208 0.99747 0.91472 0.89302 1.88114 1.84131 1.43904 1.14195 1.23498 0.99624 0.93445 0.89375 1.23587 1.01120 0.94334 0.86673 1.88192 1.84339 1.44040 1.13881 0.92780 0.91452 0.93161 0.94039 0.90436 0.83624 0.87999 0.91651 0.77012 0.91328 0.91616 0.91745 0.74463 0.84548 0.92316 0.92107 0.84868 0.85646 0.90630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 8.95 71.98 0.64 -1.70 16 2 C -0.09 -1.36 2.57 -10.80 -0.03 -1.39 16 3 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 4 C 0.07 1.33 5.07 86.30 0.44 1.77 16 5 N -0.68 -19.47 5.58 -517.92 -2.89 -22.36 16 6 C 0.06 2.13 6.17 85.55 0.53 2.65 16 7 C 0.44 20.48 7.82 87.66 0.69 21.16 16 8 O -0.62 -33.80 15.78 -3.08 -0.05 -33.85 16 9 N -0.57 -29.27 5.29 -306.99 -1.62 -30.90 16 10 C -0.34 -18.96 9.68 84.04 0.81 -18.15 16 11 H 0.08 4.79 7.16 -2.92 -0.02 4.77 16 12 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 13 N -0.92 -49.58 13.05 21.66 0.28 -49.30 16 14 Si 0.99 42.72 29.55 68.60 2.03 44.75 16 15 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 16 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 17 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 18 C 0.13 2.08 5.06 86.38 0.44 2.52 16 19 N -0.71 -9.38 5.25 -463.05 -2.43 -11.81 16 20 C 0.52 10.00 7.18 87.66 0.63 10.63 16 21 O -0.57 -16.85 16.51 15.93 0.26 -16.59 16 22 C 0.04 0.57 3.25 29.89 0.10 0.67 16 23 H 0.12 1.14 8.14 -2.38 -0.02 1.12 16 24 C 0.04 0.46 6.30 72.03 0.45 0.91 16 25 O -0.38 -4.98 10.85 -136.01 -1.47 -6.45 16 26 C 0.02 0.15 7.05 72.03 0.51 0.66 16 27 C 0.02 0.19 7.05 72.03 0.51 0.70 16 28 O -0.39 -7.30 10.03 -122.90 -1.23 -8.53 16 29 H 0.05 1.22 7.75 -2.38 -0.02 1.20 16 30 H 0.07 0.82 7.18 -2.39 -0.02 0.80 16 31 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.35 10.33 8.43 -89.69 -0.76 9.57 16 35 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 36 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.40 19.20 7.90 -92.70 -0.73 18.47 16 38 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 39 H 0.07 1.14 8.14 -2.38 -0.02 1.13 16 40 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.42 2.97 7.57 -92.71 -0.70 2.27 16 42 H 0.14 0.79 8.06 -2.39 -0.02 0.77 16 43 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 45 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 Total: -1.00 -77.65 391.22 -2.13 -79.79 By element: Atomic # 1 Polarization: 36.22 SS G_CDS: -1.19 Total: 35.03 kcal Atomic # 6 Polarization: 14.04 SS G_CDS: 6.18 Total: 20.22 kcal Atomic # 7 Polarization: -107.70 SS G_CDS: -6.66 Total: -114.36 kcal Atomic # 8 Polarization: -62.93 SS G_CDS: -2.49 Total: -65.42 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -77.65 -2.13 -79.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698742114.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.960 kcal (2) G-P(sol) polarization free energy of solvation -77.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds