Wall clock time and date at job start Tue Mar 31 2020 05:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47277 * 2 1 4 4 C 1.53000 * 109.47087 * 240.00143 * 2 1 3 5 5 N 1.46907 * 109.47106 * 307.06877 * 4 2 1 6 6 C 1.47009 * 111.00106 * 285.54740 * 5 4 2 7 7 C 1.53092 * 109.25826 * 177.60653 * 6 5 4 8 8 O 1.43017 * 109.26001 * 56.84719 * 7 6 5 9 9 C 1.43012 * 113.73798 * 301.33050 * 8 7 6 10 10 C 1.47011 * 111.00020 * 161.91004 * 5 4 2 11 11 C 1.50701 * 109.47172 * 120.00068 * 2 1 3 12 12 O 1.21276 * 120.00010 * 160.97946 * 11 2 1 13 13 N 1.34777 * 119.99848 * 340.98095 * 11 2 1 14 14 C 1.46500 * 120.00098 * 179.97438 * 13 11 2 15 15 C 1.53002 * 109.47385 * 179.97438 * 14 13 11 16 16 H 1.09003 * 109.46714 * 60.00256 * 15 14 13 17 17 O 1.42891 * 109.46965 * 300.00132 * 15 14 13 18 18 C 1.52995 * 109.47205 * 179.97438 * 15 14 13 19 19 N 1.46501 * 109.47060 * 185.00004 * 18 15 14 20 20 C 1.36936 * 119.99635 * 180.02562 * 19 18 15 21 21 H 1.08001 * 120.00612 * 359.97438 * 20 19 18 22 22 C 1.38822 * 119.99716 * 179.97438 * 20 19 18 23 23 N 1.31615 * 119.99606 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99958 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47154 * 89.99879 * 24 22 20 26 26 H 1.48501 * 109.46944 * 209.99886 * 24 22 20 27 27 H 1.48507 * 109.47001 * 329.99963 * 24 22 20 28 28 H 1.09006 * 109.47041 * 302.30506 * 1 2 3 29 29 H 1.09000 * 109.46790 * 62.30385 * 1 2 3 30 30 H 1.08998 * 109.46888 * 182.30485 * 1 2 3 31 31 H 1.09004 * 109.47081 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47492 * 300.00298 * 3 2 1 33 33 H 1.09000 * 109.47099 * 60.00194 * 3 2 1 34 34 H 1.08996 * 109.47434 * 67.06852 * 4 2 1 35 35 H 1.08998 * 109.46809 * 187.07436 * 4 2 1 36 36 H 1.09002 * 109.50634 * 297.54183 * 6 5 4 37 37 H 1.09005 * 109.50938 * 57.67320 * 6 5 4 38 38 H 1.08997 * 109.50918 * 296.91196 * 7 6 5 39 39 H 1.09001 * 109.54738 * 176.80483 * 7 6 5 40 40 H 1.08999 * 109.50948 * 298.73361 * 9 8 7 41 41 H 1.08996 * 109.54382 * 178.62235 * 9 8 7 42 42 H 1.09001 * 109.50791 * 302.33108 * 10 5 4 43 43 H 1.09006 * 109.50616 * 62.41162 * 10 5 4 44 44 H 0.97004 * 120.00008 * 359.97438 * 13 11 2 45 45 H 1.09001 * 109.46869 * 300.00035 * 14 13 11 46 46 H 1.08999 * 109.47445 * 59.99787 * 14 13 11 47 47 H 0.96707 * 114.00178 * 299.99873 * 17 15 14 48 48 H 1.08998 * 109.47339 * 305.00023 * 18 15 14 49 49 H 1.09009 * 109.47003 * 65.00352 * 18 15 14 50 50 H 0.96996 * 119.99786 * 359.97438 * 19 18 15 51 51 H 0.97004 * 119.99283 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.4161 -2.0483 -1.3375 6 6 2.0018 -2.9722 -0.3554 7 6 1.2837 -4.3216 -0.4408 8 8 1.3770 -4.8218 -1.7774 9 6 0.8156 -3.9473 -2.7599 10 6 1.5289 -2.5940 -2.6979 11 6 2.0324 -0.7104 1.2305 12 8 3.1706 -1.1272 1.2678 13 7 1.2166 -0.8826 2.2894 14 6 1.7047 -1.5737 3.4854 15 6 0.5892 -1.6337 4.5308 16 1 -0.2638 -2.1747 4.1212 17 8 0.1895 -0.3063 4.8775 18 6 1.0988 -2.3560 5.7796 19 7 -0.0018 -2.5191 6.7327 20 6 0.2180 -3.1420 7.9322 21 1 1.2025 -3.5135 8.1755 22 6 -0.8248 -3.2961 8.8355 23 7 -2.0246 -2.8438 8.5388 24 14 -0.5252 -4.1465 10.4715 25 1 -0.1240 -3.1396 11.4866 26 1 -1.7707 -4.8246 10.9122 27 1 0.5572 -5.1513 10.3162 28 1 -0.3633 0.5492 0.8686 29 1 -0.3633 0.4777 -0.9099 30 1 -0.3633 -1.0268 0.0413 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6768 1.9563 0.8900 34 1 1.7837 -0.1396 -2.1347 35 1 3.1226 -0.8321 -1.1882 36 1 3.0613 -3.1094 -0.5714 37 1 1.8844 -2.5603 0.6470 38 1 0.2351 -4.1936 -0.1725 39 1 1.7514 -5.0276 0.2454 40 1 -0.2467 -3.8083 -2.5590 41 1 0.9448 -4.3817 -3.7512 42 1 1.0664 -1.9060 -3.4056 43 1 2.5810 -2.7244 -2.9518 44 1 0.3063 -0.5489 2.2597 45 1 2.0100 -2.5861 3.2208 46 1 2.5575 -1.0325 3.8952 47 1 0.9002 0.2341 5.2492 48 1 1.4856 -3.3359 5.5001 49 1 1.8939 -1.7692 6.2397 50 1 -0.8859 -2.1851 6.5143 51 1 -2.7531 -2.9512 9.1702 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699053353.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:25 Heat of formation + Delta-G solvation = -111.984483 kcal Electronic energy + Delta-G solvation = -29980.295498 eV Core-core repulsion = 25915.277458 eV Total energy + Delta-G solvation = -4065.018041 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.00337 -39.32834 -37.80919 -36.49408 -34.76708 -34.21948 -33.93598 -31.40709 -31.32190 -29.23237 -28.32381 -27.47070 -25.59960 -24.75609 -24.26249 -23.11619 -21.94938 -21.43337 -20.64655 -19.39933 -17.39437 -17.16947 -16.85072 -16.51349 -16.26427 -16.15018 -15.53715 -15.46416 -15.37046 -14.92663 -14.49818 -14.43460 -14.25695 -14.03353 -13.68543 -13.58385 -13.05633 -12.89511 -12.82376 -12.52888 -12.48932 -12.40625 -12.31174 -12.06206 -11.87601 -11.61479 -11.51794 -11.32897 -11.20428 -10.98137 -10.83225 -10.67501 -10.63212 -10.19901 -9.94369 -9.85185 -9.79720 -9.47970 -9.13104 -8.92189 -8.66720 -6.96084 -5.78009 -3.07734 2.53256 3.06734 3.40357 3.42624 3.47731 3.49501 3.65579 4.27601 4.49270 4.53493 4.61265 4.67129 4.69498 4.77923 4.81305 4.86823 4.89186 4.99923 5.08729 5.19576 5.21790 5.29164 5.30632 5.36709 5.39730 5.50731 5.52336 5.53785 5.59616 5.63990 5.65104 5.68132 5.76279 5.80034 5.85506 5.92175 6.05924 6.17169 6.37787 6.48328 6.62641 6.63516 6.64314 6.90403 7.43058 7.66780 7.89444 8.13216 8.40065 9.51815 10.07986 10.43699 11.44321 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.015791 B = 0.002588 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.707531 B =10816.626358 C =11854.730357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.077 4.077 3 C -0.136 4.136 4 C 0.072 3.928 5 N -0.533 5.533 6 C 0.008 3.992 7 C 0.063 3.937 8 O -0.387 6.387 9 C 0.064 3.936 10 C 0.018 3.982 11 C 0.526 3.474 12 O -0.549 6.549 13 N -0.719 5.719 14 C 0.087 3.913 15 C 0.089 3.911 16 H 0.105 0.895 17 O -0.552 6.552 18 C 0.127 3.873 19 N -0.726 5.726 20 C -0.244 4.244 21 H 0.070 0.930 22 C -0.012 4.012 23 N -0.930 5.930 24 Si 0.908 3.092 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.282 1.282 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.052 0.948 36 H 0.046 0.954 37 H 0.100 0.900 38 H 0.059 0.941 39 H 0.098 0.902 40 H 0.059 0.941 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.042 0.958 44 H 0.407 0.593 45 H 0.076 0.924 46 H 0.070 0.930 47 H 0.373 0.627 48 H 0.028 0.972 49 H 0.023 0.977 50 H 0.388 0.612 51 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.227 6.443 -25.478 27.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.081 4.081 3 C -0.194 4.194 4 C -0.056 4.056 5 N -0.258 5.258 6 C -0.120 4.120 7 C -0.014 4.014 8 O -0.305 6.305 9 C -0.013 4.013 10 C -0.110 4.110 11 C 0.313 3.687 12 O -0.428 6.428 13 N -0.372 5.372 14 C -0.037 4.037 15 C 0.030 3.970 16 H 0.123 0.877 17 O -0.357 6.357 18 C -0.001 4.001 19 N -0.370 5.370 20 C -0.375 4.375 21 H 0.088 0.912 22 C -0.208 4.208 23 N -0.578 5.578 24 Si 0.739 3.261 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.207 1.207 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.118 0.882 38 H 0.078 0.922 39 H 0.116 0.884 40 H 0.077 0.923 41 H 0.114 0.886 42 H 0.103 0.897 43 H 0.060 0.940 44 H 0.244 0.756 45 H 0.094 0.906 46 H 0.089 0.911 47 H 0.220 0.780 48 H 0.046 0.954 49 H 0.040 0.960 50 H 0.223 0.777 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.110 5.696 -25.455 26.791 hybrid contribution 0.777 0.155 1.018 1.290 sum 6.887 5.851 -24.438 26.055 Atomic orbital electron populations 1.21847 0.92289 1.03537 1.02160 1.20777 0.97940 0.96215 0.93133 1.21758 1.01823 0.92879 1.02949 1.22049 0.97599 0.89401 0.96564 1.62234 1.56550 1.02532 1.04515 1.23210 0.97343 0.93310 0.98165 1.22727 1.00441 0.94466 0.83809 1.87987 1.81492 1.44885 1.16139 1.22632 0.97120 0.88962 0.92604 1.22779 1.00010 0.97423 0.90802 1.20368 0.85457 0.78630 0.84203 1.90724 1.18987 1.50647 1.82460 1.46151 1.16860 1.58971 1.15221 1.22111 0.97902 0.98085 0.85629 1.22390 0.96653 0.84427 0.93569 0.87741 1.86577 1.40838 1.23699 1.84602 1.21197 0.92437 0.97184 0.89314 1.42234 1.07976 1.70352 1.16483 1.19213 0.95296 1.29802 0.93218 0.91225 1.24762 0.95611 1.01609 0.98847 1.69676 1.00426 1.51361 1.36320 0.86181 0.76877 0.79073 0.83987 1.21683 1.21709 1.20734 0.92437 0.91657 0.90626 0.91838 0.91262 0.91659 0.89929 0.92956 0.93554 0.88238 0.92245 0.88405 0.92254 0.88645 0.89684 0.94004 0.75583 0.90580 0.91124 0.78024 0.95401 0.95975 0.77722 0.93458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 7.21 37.16 0.27 -0.81 16 2 C -0.08 -0.68 0.80 -155.66 -0.12 -0.80 16 3 C -0.14 -1.03 8.45 37.16 0.31 -0.71 16 4 C 0.07 0.64 4.09 -3.82 -0.02 0.62 16 5 N -0.53 -5.03 3.65 -234.31 -0.85 -5.89 16 6 C 0.01 0.09 4.50 -3.72 -0.02 0.07 16 7 C 0.06 0.68 7.01 37.20 0.26 0.94 16 8 O -0.39 -4.43 10.83 -35.23 -0.38 -4.81 16 9 C 0.06 0.54 7.01 37.21 0.26 0.80 16 10 C 0.02 0.15 5.61 -3.71 -0.02 0.12 16 11 C 0.53 6.15 3.84 -10.98 -0.04 6.11 16 12 O -0.55 -8.22 14.60 5.56 0.08 -8.13 16 13 N -0.72 -8.01 5.21 -60.29 -0.31 -8.32 16 14 C 0.09 1.10 5.34 -4.04 -0.02 1.08 16 15 C 0.09 1.33 3.08 -26.73 -0.08 1.25 16 16 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 17 O -0.55 -8.41 13.03 -35.23 -0.46 -8.86 16 18 C 0.13 2.42 5.90 -4.04 -0.02 2.40 16 19 N -0.73 -18.18 5.55 -59.90 -0.33 -18.52 16 20 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 21 H 0.07 1.89 7.83 -52.49 -0.41 1.47 16 22 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 23 N -0.93 -28.21 13.06 55.49 0.72 -27.48 16 24 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 27 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 28 H 0.06 0.42 7.07 -51.93 -0.37 0.05 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.67 7.51 -51.93 -0.39 0.28 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.57 7.88 -51.93 -0.41 0.16 16 35 H 0.05 0.56 7.51 -51.93 -0.39 0.17 16 36 H 0.05 0.61 8.13 -51.93 -0.42 0.19 16 37 H 0.10 1.25 4.03 -51.93 -0.21 1.04 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.08 0.52 8.03 -51.93 -0.42 0.10 16 43 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.41 4.16 6.18 -40.82 -0.25 3.91 16 45 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 47 H 0.37 4.71 9.05 45.56 0.41 5.12 16 48 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 50 H 0.39 10.41 7.67 -40.82 -0.31 10.10 16 51 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 398.31 15.07 6.00 6.00 Total: -1.00 -33.36 398.31 -8.27 -41.64 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: -8.22 Total: 13.37 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: 0.51 Total: 3.64 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: -0.78 Total: -60.20 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.76 Total: -21.81 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.36 -8.27 -41.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699053353.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.349 kcal (2) G-P(sol) polarization free energy of solvation -33.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds