Wall clock time and date at job start Tue Mar 31 2020 05:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47224 * 2 1 4 4 C 1.52999 * 109.47305 * 120.00248 * 2 1 3 5 5 N 1.46903 * 109.47137 * 294.50217 * 4 2 1 6 6 C 1.47010 * 111.00313 * 210.26352 * 5 4 2 7 7 C 1.53097 * 109.26062 * 177.60799 * 6 5 4 8 8 O 1.43006 * 109.26103 * 56.84428 * 7 6 5 9 9 C 1.43017 * 113.74217 * 301.33634 * 8 7 6 10 10 C 1.47012 * 111.00100 * 86.62613 * 5 4 2 11 11 C 1.50701 * 109.47230 * 240.00216 * 2 1 3 12 12 O 1.21285 * 119.99939 * 239.99418 * 11 2 1 13 13 N 1.34770 * 120.00186 * 59.99957 * 11 2 1 14 14 C 1.46502 * 120.00409 * 179.97438 * 13 11 2 15 15 C 1.52997 * 109.47484 * 180.02562 * 14 13 11 16 16 H 1.09004 * 109.47182 * 304.99966 * 15 14 13 17 17 O 1.42906 * 109.47137 * 65.00062 * 15 14 13 18 18 C 1.53000 * 109.47396 * 185.00082 * 15 14 13 19 19 N 1.46500 * 109.47053 * 179.97438 * 18 15 14 20 20 C 1.36936 * 119.99608 * 179.97438 * 19 18 15 21 21 H 1.08007 * 120.00018 * 359.97438 * 20 19 18 22 22 C 1.38810 * 120.00138 * 179.97438 * 20 19 18 23 23 N 1.31618 * 119.99671 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00438 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46984 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47318 * 119.99833 * 24 22 20 27 27 H 1.48501 * 109.46894 * 240.00339 * 24 22 20 28 28 H 1.08998 * 109.47218 * 312.20519 * 1 2 3 29 29 H 1.09000 * 109.46912 * 72.20813 * 1 2 3 30 30 H 1.09000 * 109.47073 * 192.20714 * 1 2 3 31 31 H 1.09005 * 109.47330 * 175.09194 * 3 2 1 32 32 H 1.08991 * 109.47360 * 295.09725 * 3 2 1 33 33 H 1.09000 * 109.46892 * 55.09848 * 3 2 1 34 34 H 1.09000 * 109.47442 * 174.50409 * 4 2 1 35 35 H 1.08997 * 109.47168 * 54.49930 * 4 2 1 36 36 H 1.08999 * 109.50912 * 297.54298 * 6 5 4 37 37 H 1.09000 * 109.50525 * 57.67019 * 6 5 4 38 38 H 1.09004 * 109.50451 * 296.90913 * 7 6 5 39 39 H 1.09000 * 109.54597 * 176.80847 * 7 6 5 40 40 H 1.08998 * 109.50328 * 298.73032 * 9 8 7 41 41 H 1.08995 * 109.54541 * 178.62611 * 9 8 7 42 42 H 1.09001 * 109.50451 * 302.32859 * 10 5 4 43 43 H 1.09002 * 109.50445 * 62.41665 * 10 5 4 44 44 H 0.97002 * 119.99684 * 0.02562 * 13 11 2 45 45 H 1.09006 * 109.46930 * 300.00422 * 14 13 11 46 46 H 1.09002 * 109.47040 * 59.99730 * 14 13 11 47 47 H 0.96692 * 113.99893 * 60.00137 * 17 15 14 48 48 H 1.09004 * 109.46861 * 300.00081 * 18 15 14 49 49 H 1.09005 * 109.46729 * 59.99561 * 18 15 14 50 50 H 0.96997 * 120.00255 * 0.02562 * 19 18 15 51 51 H 0.96999 * 120.00278 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6617 0.0435 2.4450 6 6 2.6464 -0.1398 3.5210 7 6 2.2462 0.7191 4.7236 8 8 0.9227 0.3670 5.1351 9 6 -0.0622 0.5340 4.1117 10 6 0.3147 -0.3268 2.9030 11 6 2.0323 -0.7104 -1.2305 12 8 2.7297 -1.6964 -1.1192 13 7 1.7067 -0.2499 -2.4545 14 6 2.1956 -0.9401 -3.6508 15 6 1.6860 -0.2186 -4.9000 16 1 0.5996 -0.1404 -4.8567 17 8 2.2558 1.0906 -4.9596 18 6 2.0913 -1.0083 -6.1462 19 7 1.6028 -0.3177 -7.3422 20 6 1.8479 -0.8417 -8.5834 21 1 2.4018 -1.7638 -8.6806 22 6 1.3847 -0.1876 -9.7168 23 7 0.7103 0.9364 -9.5984 24 14 1.7185 -0.9027 -11.4099 25 1 2.4914 -2.1630 -11.2713 26 1 0.4294 -1.1843 -12.0912 27 1 2.5005 0.0713 -12.2131 28 1 -0.3633 0.6904 0.7612 29 1 -0.3633 0.3140 -0.9785 30 1 -0.3633 -1.0044 0.2173 31 1 3.1265 1.4438 0.0879 32 1 1.7502 1.9304 -0.9305 33 1 1.6067 1.9810 0.8428 34 1 3.1255 -0.8073 1.2014 35 1 1.5985 -1.7166 1.2998 36 1 2.6726 -1.1888 3.8157 37 1 3.6318 0.1645 3.1683 38 1 2.2722 1.7722 4.4434 39 1 2.9415 0.5438 5.5445 40 1 -0.1034 1.5816 3.8137 41 1 -1.0366 0.2244 4.4893 42 1 -0.4020 -0.1590 2.0990 43 1 0.3034 -1.3791 3.1870 44 1 1.1494 0.5390 -2.5435 45 1 3.2856 -0.9397 -3.6505 46 1 1.8327 -1.9680 -3.6510 47 1 3.2218 1.0976 -5.0002 48 1 3.1776 -1.0865 -6.1894 49 1 1.6567 -2.0070 -6.1006 50 1 1.1064 0.5111 -7.2550 51 1 0.3868 1.3937 -10.3903 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699053354.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:29 Heat of formation + Delta-G solvation = -115.564718 kcal Electronic energy + Delta-G solvation = -28949.796394 eV Core-core repulsion = 24884.623102 eV Total energy + Delta-G solvation = -4065.173291 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.70182 -39.65154 -37.80927 -36.79516 -34.63987 -34.14651 -33.85704 -31.65561 -31.29937 -29.20294 -28.46359 -27.63425 -25.63353 -25.03680 -24.26627 -23.05653 -21.89254 -21.41631 -20.79342 -19.40565 -17.33671 -17.16307 -16.81599 -16.56943 -16.30085 -16.03041 -15.81518 -15.61380 -15.38602 -14.84902 -14.77797 -14.48408 -14.32241 -13.81279 -13.75079 -13.62364 -13.43493 -13.06719 -12.97592 -12.62495 -12.53421 -12.39306 -12.27152 -11.97902 -11.87260 -11.77099 -11.54659 -11.30088 -11.10689 -10.97855 -10.89381 -10.85528 -10.63905 -10.16182 -10.09739 -9.90322 -9.78157 -9.45445 -9.11757 -8.93055 -8.78770 -6.96173 -5.78484 -3.08215 2.55996 2.92263 3.40956 3.41744 3.47309 3.49632 3.54906 4.31816 4.43813 4.48958 4.52514 4.58241 4.59545 4.69887 4.73125 4.74507 4.83285 4.87073 5.00980 5.08473 5.20663 5.21807 5.26895 5.31725 5.34464 5.38625 5.41485 5.52921 5.53563 5.58485 5.59915 5.62525 5.70929 5.77244 5.90825 5.93908 6.05328 6.17495 6.37544 6.48278 6.52304 6.54262 6.64751 6.72202 7.43556 7.66852 7.91725 8.14454 8.39700 9.51506 10.07964 10.43914 11.43871 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.040022 B = 0.001807 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.452285 B =15488.450089 C =15660.107045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.073 4.073 3 C -0.127 4.127 4 C 0.079 3.921 5 N -0.532 5.532 6 C 0.018 3.982 7 C 0.065 3.935 8 O -0.388 6.388 9 C 0.064 3.936 10 C 0.000 4.000 11 C 0.521 3.479 12 O -0.547 6.547 13 N -0.717 5.717 14 C 0.089 3.911 15 C 0.089 3.911 16 H 0.104 0.896 17 O -0.552 6.552 18 C 0.127 3.873 19 N -0.725 5.725 20 C -0.244 4.244 21 H 0.070 0.930 22 C -0.013 4.013 23 N -0.929 5.929 24 Si 0.908 3.092 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.049 0.951 36 H 0.043 0.957 37 H 0.087 0.913 38 H 0.060 0.940 39 H 0.097 0.903 40 H 0.060 0.940 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.042 0.958 44 H 0.405 0.595 45 H 0.071 0.929 46 H 0.077 0.923 47 H 0.374 0.626 48 H 0.023 0.977 49 H 0.028 0.972 50 H 0.389 0.611 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.319 0.978 29.948 29.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.077 4.077 3 C -0.185 4.185 4 C -0.049 4.049 5 N -0.256 5.256 6 C -0.110 4.110 7 C -0.013 4.013 8 O -0.306 6.306 9 C -0.013 4.013 10 C -0.128 4.128 11 C 0.306 3.694 12 O -0.425 6.425 13 N -0.369 5.369 14 C -0.035 4.035 15 C 0.030 3.970 16 H 0.121 0.879 17 O -0.357 6.357 18 C -0.002 4.002 19 N -0.370 5.370 20 C -0.375 4.375 21 H 0.088 0.912 22 C -0.209 4.209 23 N -0.578 5.578 24 Si 0.739 3.261 25 H -0.206 1.206 26 H -0.218 1.218 27 H -0.218 1.218 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.105 0.895 38 H 0.078 0.922 39 H 0.115 0.885 40 H 0.078 0.922 41 H 0.114 0.886 42 H 0.120 0.880 43 H 0.060 0.940 44 H 0.240 0.760 45 H 0.089 0.911 46 H 0.095 0.905 47 H 0.221 0.779 48 H 0.040 0.960 49 H 0.046 0.954 50 H 0.224 0.776 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.205 0.756 29.961 29.971 hybrid contribution 0.441 -0.835 -1.239 1.558 sum 0.646 -0.079 28.722 28.729 Atomic orbital electron populations 1.22119 0.92774 1.02501 1.02971 1.20685 0.97177 0.97447 0.92382 1.21713 1.01325 0.92846 1.02622 1.21909 1.01161 0.94111 0.87718 1.62051 1.01932 1.56694 1.04965 1.22815 0.96519 0.99376 0.92298 1.22662 0.84153 0.98306 0.96133 1.87985 1.16930 1.88110 1.37582 1.22675 0.91848 0.99367 0.87455 1.23263 0.92114 0.98404 0.99037 1.20510 0.79983 0.84215 0.84661 1.90694 1.38273 1.26558 1.86971 1.45919 1.53566 1.32098 1.05295 1.22113 0.99885 0.97105 0.84394 1.22379 0.98907 0.83454 0.92302 0.87863 1.86573 1.25337 1.27136 1.96615 1.21194 0.97156 0.95000 0.86868 1.42232 1.66576 1.28099 1.00134 1.19268 1.29306 1.05266 0.83636 0.91160 1.24766 1.00825 0.97404 0.97903 1.69687 1.41980 1.17783 1.28315 0.86106 0.77379 0.78074 0.84551 1.20554 1.21817 1.21812 0.90329 0.91916 0.92276 0.92553 0.92505 0.90315 0.90106 0.93281 0.93892 0.89470 0.92183 0.88541 0.92205 0.88558 0.88038 0.93956 0.75994 0.91108 0.90516 0.77935 0.95960 0.95415 0.77645 0.93514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 6.95 37.15 0.26 -0.80 16 2 C -0.07 -0.64 0.69 -155.66 -0.11 -0.75 16 3 C -0.13 -1.01 8.09 37.16 0.30 -0.71 16 4 C 0.08 0.72 3.59 -3.82 -0.01 0.70 16 5 N -0.53 -3.98 3.67 -234.31 -0.86 -4.84 16 6 C 0.02 0.13 5.52 -3.71 -0.02 0.11 16 7 C 0.06 0.42 7.01 37.21 0.26 0.68 16 8 O -0.39 -3.29 10.83 -35.23 -0.38 -3.67 16 9 C 0.06 0.41 7.01 37.21 0.26 0.67 16 10 C 0.00 0.00 5.14 -3.71 -0.02 -0.02 16 11 C 0.52 6.26 6.48 -10.99 -0.07 6.19 16 12 O -0.55 -8.60 15.91 5.55 0.09 -8.51 16 13 N -0.72 -8.08 5.16 -60.29 -0.31 -8.39 16 14 C 0.09 1.15 5.31 -4.04 -0.02 1.13 16 15 C 0.09 1.34 3.09 -26.73 -0.08 1.26 16 16 H 0.10 1.59 8.14 -51.93 -0.42 1.16 16 17 O -0.55 -8.55 13.03 -35.23 -0.46 -9.01 16 18 C 0.13 2.42 5.92 -4.04 -0.02 2.40 16 19 N -0.73 -18.21 5.49 -59.90 -0.33 -18.54 16 20 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 21 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 22 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 23 N -0.93 -28.23 13.06 55.49 0.72 -27.51 16 24 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 28 H 0.08 0.47 6.08 -51.93 -0.32 0.15 16 29 H 0.06 0.44 7.26 -51.93 -0.38 0.07 16 30 H 0.06 0.44 7.82 -51.93 -0.41 0.04 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.44 7.43 -51.93 -0.39 0.05 16 33 H 0.08 0.58 7.59 -51.93 -0.39 0.19 16 34 H 0.08 0.82 7.48 -51.93 -0.39 0.43 16 35 H 0.05 0.50 7.75 -51.93 -0.40 0.10 16 36 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.09 0.54 8.00 -51.93 -0.42 0.13 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.10 0.59 4.24 -51.93 -0.22 0.37 16 43 H 0.04 0.33 8.11 -51.93 -0.42 -0.09 16 44 H 0.40 4.02 7.16 -40.82 -0.29 3.73 16 45 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 47 H 0.37 4.88 9.04 45.56 0.41 5.29 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 49 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 50 H 0.39 10.46 7.54 -40.82 -0.31 10.15 16 51 H 0.25 7.45 8.31 -40.82 -0.34 7.12 16 LS Contribution 399.54 15.07 6.02 6.02 Total: -1.00 -33.79 399.54 -8.17 -41.96 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -8.11 Total: 11.69 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: 0.47 Total: 3.41 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: -0.77 Total: -59.28 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.75 Total: -21.19 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.79 -8.17 -41.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699053354.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.603 kcal (2) G-P(sol) polarization free energy of solvation -33.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds