Wall clock time and date at job start Tue Mar 31 2020 04:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00368 * 2 1 4 4 H 1.08994 * 109.46732 * 330.00092 * 3 2 1 5 5 C 1.53001 * 109.46862 * 89.99728 * 3 2 1 6 6 C 1.50695 * 109.47007 * 210.00059 * 3 2 1 7 7 O 1.21274 * 120.00413 * 355.26985 * 6 3 2 8 8 N 1.34784 * 119.99635 * 174.99942 * 6 3 2 9 9 C 1.46499 * 119.99971 * 179.97438 * 8 6 3 10 10 C 1.52992 * 109.47267 * 180.02562 * 9 8 6 11 11 O 1.42902 * 110.63047 * 303.10293 * 10 9 8 12 12 C 1.55140 * 110.70664 * 66.40029 * 10 9 8 13 13 C 1.54914 * 101.65108 * 154.03754 * 12 10 9 14 14 N 1.47845 * 104.79438 * 322.92927 * 13 12 10 15 15 C 1.46901 * 110.99558 * 146.37044 * 14 13 12 16 16 C 1.50690 * 109.47627 * 69.15272 * 15 14 13 17 17 O 1.21297 * 120.00068 * 0.02562 * 16 15 14 18 18 N 1.34777 * 120.00257 * 179.97438 * 16 15 14 19 19 C 1.37104 * 120.00164 * 179.97438 * 18 16 15 20 20 H 1.07997 * 119.99901 * 0.02562 * 19 18 16 21 21 C 1.38945 * 119.99811 * 179.97438 * 19 18 16 22 22 N 1.31410 * 119.99891 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 120.00306 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47429 * 89.99274 * 23 21 19 25 25 H 1.48503 * 109.47346 * 209.99717 * 23 21 19 26 26 H 1.48504 * 109.46670 * 329.99544 * 23 21 19 27 27 C 1.47438 * 108.56940 * 24.09679 * 14 13 12 28 28 H 1.09003 * 109.46889 * 300.00142 * 1 2 3 29 29 H 1.08998 * 109.46881 * 60.00114 * 1 2 3 30 30 H 1.09000 * 109.46965 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47731 * 300.00041 * 5 3 2 32 32 H 1.08994 * 109.47150 * 60.00620 * 5 3 2 33 33 H 1.09005 * 109.46612 * 180.02562 * 5 3 2 34 34 H 0.96999 * 120.00044 * 0.02562 * 8 6 3 35 35 H 1.09004 * 109.47024 * 300.00310 * 9 8 6 36 36 H 1.09005 * 109.47136 * 59.99926 * 9 8 6 37 37 H 0.96700 * 113.99436 * 59.29942 * 11 10 9 38 38 H 1.09003 * 110.99370 * 272.12575 * 12 10 9 39 39 H 1.08998 * 110.99111 * 35.94470 * 12 10 9 40 40 H 1.09001 * 110.36818 * 204.09880 * 13 12 10 41 41 H 1.08997 * 110.46876 * 81.81266 * 13 12 10 42 42 H 1.08995 * 109.46741 * 189.16076 * 15 14 13 43 43 H 1.09009 * 109.46857 * 309.14973 * 15 14 13 44 44 H 0.96999 * 119.99853 * 0.02562 * 18 16 15 45 45 H 0.97003 * 120.00023 * 179.97438 * 22 21 19 46 46 H 1.08997 * 109.88644 * 239.60135 * 27 14 13 47 47 H 1.08998 * 109.88656 * 118.41618 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3451 1.9993 -0.5138 5 6 2.2177 1.7713 1.4425 6 6 3.3387 1.2638 -0.7104 7 8 3.7874 0.2050 -1.0957 8 7 4.0255 2.4039 -0.9224 9 6 5.3172 2.3634 -1.6125 10 6 5.8817 3.7812 -1.7218 11 8 4.9586 4.6402 -2.3943 12 6 6.2351 4.3406 -0.3186 13 6 7.3404 5.3704 -0.6617 14 7 8.1115 4.7455 -1.7575 15 6 8.6109 5.7604 -2.6949 16 6 9.6769 6.5854 -2.0212 17 8 9.9903 6.3507 -0.8732 18 7 10.2829 7.5833 -2.6946 19 6 11.2524 8.3342 -2.0815 20 1 11.5308 8.1258 -1.0590 21 6 11.8774 9.3626 -2.7759 22 7 12.8063 10.0827 -2.1881 23 14 11.3963 9.7226 -4.5447 24 1 10.2915 10.7146 -4.5651 25 1 12.5676 10.2711 -5.2745 26 1 10.9475 8.4682 -5.2006 27 6 7.2446 3.7715 -2.4456 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.2570 1.8015 1.9564 32 1 2.8829 1.0775 1.9563 33 1 2.6607 2.7673 1.4425 34 1 3.6650 3.2512 -0.6173 35 1 6.0107 1.7390 -1.0492 36 1 5.1827 1.9475 -2.6110 37 1 4.0980 4.7104 -1.9589 38 1 5.3731 4.8297 0.1352 39 1 6.6217 3.5540 0.3293 40 1 7.9810 5.5417 0.2034 41 1 6.8971 6.3082 -0.9963 42 1 9.0318 5.2689 -3.5720 43 1 7.7892 6.4081 -3.0007 44 1 10.0325 7.7707 -3.6128 45 1 13.2429 10.8004 -2.6731 46 1 7.6871 2.7770 -2.3898 47 1 7.1132 4.0633 -3.4876 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699894690.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:48:14 Heat of formation + Delta-G solvation = -145.308103 kcal Electronic energy + Delta-G solvation = -28472.199559 eV Core-core repulsion = 24269.903403 eV Total energy + Delta-G solvation = -4202.296156 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.69596 -39.75482 -38.32108 -37.85974 -36.02477 -34.68506 -33.89930 -32.38656 -31.70038 -31.17463 -29.49712 -27.46916 -27.30760 -25.62073 -24.12622 -23.67030 -21.56035 -20.86910 -20.50898 -19.35802 -18.47594 -18.25329 -17.53773 -16.83268 -16.30512 -16.14034 -15.73960 -15.61489 -15.31048 -15.11794 -14.89866 -14.67363 -14.38807 -14.00545 -13.68331 -13.62760 -13.31580 -13.18099 -12.99735 -12.90691 -12.75234 -12.58859 -12.33549 -12.32473 -11.96259 -11.70753 -11.65201 -11.52751 -11.29038 -11.15732 -10.91227 -10.58034 -10.52311 -10.24589 -9.96233 -9.93468 -9.55137 -9.53423 -8.57973 -8.16346 -8.01684 -6.29356 -3.80570 2.19214 2.34905 3.04361 3.08051 3.16234 3.43066 3.68141 3.76985 3.91943 4.09727 4.11982 4.25536 4.28872 4.35480 4.43416 4.56729 4.76739 4.84854 4.87155 4.96673 5.08754 5.13096 5.18933 5.21832 5.25199 5.34614 5.40146 5.52014 5.54369 5.57634 5.66912 5.76918 5.81579 5.88691 5.94197 6.04730 6.33617 6.47193 6.95475 7.08767 7.09352 7.21964 7.60414 7.77550 8.16344 8.62508 8.97336 9.44713 9.86155 10.83837 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.036533 B = 0.001979 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.237974 B =14145.678124 C =14338.687393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.070 3.930 4 H 0.087 0.913 5 C -0.172 4.172 6 C 0.515 3.485 7 O -0.514 6.514 8 N -0.728 5.728 9 C 0.105 3.895 10 C 0.097 3.903 11 O -0.544 6.544 12 C -0.154 4.154 13 C 0.057 3.943 14 N -0.500 5.500 15 C 0.038 3.962 16 C 0.454 3.546 17 O -0.560 6.560 18 N -0.593 5.593 19 C -0.303 4.303 20 H 0.119 0.881 21 C 0.041 3.959 22 N -0.883 5.883 23 Si 0.879 3.121 24 H -0.272 1.272 25 H -0.277 1.277 26 H -0.269 1.269 27 C 0.058 3.942 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.396 0.604 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.369 0.631 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.047 0.953 42 H 0.089 0.911 43 H 0.053 0.947 44 H 0.370 0.630 45 H 0.273 0.727 46 H 0.095 0.905 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.636 -14.228 1.457 30.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C 0.008 3.992 4 H 0.105 0.895 5 C -0.229 4.229 6 C 0.300 3.700 7 O -0.387 6.387 8 N -0.383 5.383 9 C -0.019 4.019 10 C 0.055 3.945 11 O -0.350 6.350 12 C -0.193 4.193 13 C -0.071 4.071 14 N -0.224 5.224 15 C -0.094 4.094 16 C 0.240 3.760 17 O -0.441 6.441 18 N -0.233 5.233 19 C -0.432 4.432 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.523 5.523 23 Si 0.706 3.294 24 H -0.197 1.197 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.071 4.071 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.110 0.890 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.230 0.770 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.217 0.783 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.115 0.885 41 H 0.065 0.935 42 H 0.108 0.892 43 H 0.071 0.929 44 H 0.202 0.798 45 H 0.083 0.917 46 H 0.113 0.887 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -24.853 -15.357 1.730 29.266 hybrid contribution -1.800 1.531 -1.300 2.697 sum -26.653 -13.827 0.430 30.029 Atomic orbital electron populations 1.22904 0.80401 1.03443 1.00094 1.88065 1.19819 1.24956 1.94924 1.21929 0.93308 0.87103 0.96840 0.89524 1.22243 1.03681 1.02108 0.94895 1.20385 0.86187 0.83948 0.79517 1.90752 1.69077 1.29640 1.49254 1.45835 1.22177 1.09379 1.60899 1.22002 0.84416 0.97162 0.98368 1.22815 0.90709 0.87717 0.93238 1.86669 1.26391 1.68311 1.53586 1.23448 0.99616 1.00189 0.96000 1.22998 0.93157 0.94949 0.95965 1.63362 1.34543 1.15008 1.09504 1.22162 0.97664 0.94099 0.95497 1.19633 0.85586 0.82998 0.87829 1.90545 1.66045 1.69815 1.17695 1.42208 1.36550 1.30886 1.13620 1.19421 1.12678 1.10414 1.00688 0.86301 1.25028 0.96394 0.96413 0.98351 1.69622 1.24827 1.20575 1.37252 0.86678 0.79079 0.78924 0.84752 1.19706 1.20194 1.19475 1.22855 0.87646 0.98773 0.97835 0.93704 0.93763 0.89001 0.91029 0.90827 0.90848 0.76961 0.89718 0.90292 0.78331 0.90707 0.89388 0.88501 0.93508 0.89241 0.92861 0.79753 0.91664 0.88654 0.91124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 10.82 101.05 1.09 1.24 16 2 O -0.36 -3.31 9.88 -55.10 -0.54 -3.86 16 3 C 0.07 0.47 3.13 -27.88 -0.09 0.38 16 4 H 0.09 0.34 7.79 -51.93 -0.40 -0.06 16 5 C -0.17 -0.82 9.48 37.16 0.35 -0.47 16 6 C 0.51 4.90 7.18 -10.98 -0.08 4.83 16 7 O -0.51 -7.46 16.51 -14.30 -0.24 -7.70 16 8 N -0.73 -4.96 5.16 -60.30 -0.31 -5.27 16 9 C 0.10 0.90 4.71 -4.05 -0.02 0.88 16 10 C 0.10 0.90 0.92 -88.80 -0.08 0.82 16 11 O -0.54 -4.94 13.09 -35.23 -0.46 -5.40 16 12 C -0.15 -1.50 5.94 -24.59 -0.15 -1.65 16 13 C 0.06 0.83 5.74 -2.29 -0.01 0.81 16 14 N -0.50 -7.82 4.86 -232.69 -1.13 -8.95 16 15 C 0.04 0.64 5.05 -4.98 -0.03 0.61 16 16 C 0.45 10.34 7.58 -10.99 -0.08 10.26 16 17 O -0.56 -14.87 14.61 5.54 0.08 -14.79 16 18 N -0.59 -14.20 5.09 -10.97 -0.06 -14.26 16 19 C -0.30 -8.60 10.16 -14.93 -0.15 -8.75 16 20 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 21 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 22 N -0.88 -25.85 13.96 55.50 0.77 -25.07 16 23 Si 0.88 19.47 27.74 -169.99 -4.71 14.76 16 24 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 25 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 26 H -0.27 -5.46 6.52 56.52 0.37 -5.09 16 27 C 0.06 0.68 6.23 -2.84 -0.02 0.66 16 28 H 0.04 0.15 7.87 -51.93 -0.41 -0.26 16 29 H 0.04 0.18 8.08 -51.93 -0.42 -0.24 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.26 7.87 -51.93 -0.41 -0.15 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.22 7.92 -51.93 -0.41 -0.19 16 34 H 0.40 1.47 7.05 -40.82 -0.29 1.18 16 35 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.37 1.86 7.78 45.56 0.35 2.21 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.09 0.86 8.02 -51.93 -0.42 0.45 16 40 H 0.10 1.68 7.38 -51.93 -0.38 1.30 16 41 H 0.05 0.71 7.62 -51.93 -0.40 0.31 16 42 H 0.09 1.35 8.03 -51.93 -0.42 0.93 16 43 H 0.05 0.83 7.85 -51.92 -0.41 0.42 16 44 H 0.37 7.82 5.76 -40.82 -0.24 7.58 16 45 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.10 1.03 7.82 -51.93 -0.41 0.63 16 47 H 0.07 0.82 7.47 -51.93 -0.39 0.43 16 LS Contribution 384.77 15.07 5.80 5.80 Total: -1.00 -37.64 384.77 -6.86 -44.50 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -6.70 Total: 9.59 kcal Atomic # 6 Polarization: 10.00 SS G_CDS: 0.65 Total: 10.65 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: -0.72 Total: -53.55 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -1.16 Total: -31.75 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -4.71 Total: 14.76 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.64 -6.86 -44.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699894690.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.811 kcal (2) G-P(sol) polarization free energy of solvation -37.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds