Wall clock time and date at job start Tue Mar 31 2020 04:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 114.00243 * 2 1 4 4 H 1.08997 * 109.47028 * 330.00023 * 3 2 1 5 5 C 1.53003 * 109.47132 * 90.00095 * 3 2 1 6 6 C 1.50698 * 109.47037 * 209.99903 * 3 2 1 7 7 O 1.21287 * 120.00230 * 354.99870 * 6 3 2 8 8 N 1.34777 * 120.00300 * 174.99932 * 6 3 2 9 9 C 1.46495 * 120.00512 * 179.97438 * 8 6 3 10 10 C 1.52996 * 109.47322 * 179.97438 * 9 8 6 11 11 O 1.42899 * 110.62673 * 61.89783 * 10 9 8 12 12 C 1.55422 * 110.69515 * 298.62478 * 10 9 8 13 13 C 1.54908 * 101.52379 * 205.97380 * 12 10 9 14 14 N 1.47846 * 104.89238 * 37.06612 * 13 12 10 15 15 C 1.46900 * 111.00020 * 213.57993 * 14 13 12 16 16 C 1.50691 * 109.47462 * 290.12787 * 15 14 13 17 17 O 1.21297 * 119.99984 * 359.97438 * 16 15 14 18 18 N 1.34765 * 120.00337 * 180.02562 * 16 15 14 19 19 C 1.37104 * 120.00200 * 179.97438 * 18 16 15 20 20 H 1.07997 * 120.00061 * 0.02562 * 19 18 16 21 21 C 1.38957 * 120.00139 * 179.97438 * 19 18 16 22 22 N 1.31407 * 120.00096 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 119.99819 * 359.97438 * 21 19 18 24 24 H 1.48508 * 109.46674 * 90.00207 * 23 21 19 25 25 H 1.48499 * 109.47052 * 209.99720 * 23 21 19 26 26 H 1.48495 * 109.47406 * 330.00494 * 23 21 19 27 27 C 1.47448 * 108.56553 * 335.84749 * 14 13 12 28 28 H 1.09001 * 109.47055 * 300.00601 * 1 2 3 29 29 H 1.09005 * 109.46756 * 59.99740 * 1 2 3 30 30 H 1.09004 * 109.47708 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46761 * 299.99466 * 5 3 2 32 32 H 1.08997 * 109.47222 * 60.00047 * 5 3 2 33 33 H 1.08998 * 109.46887 * 179.97438 * 5 3 2 34 34 H 0.97001 * 119.99798 * 0.02562 * 8 6 3 35 35 H 1.08997 * 109.47376 * 59.99573 * 9 8 6 36 36 H 1.09004 * 109.46945 * 300.00338 * 9 8 6 37 37 H 0.96696 * 114.00308 * 303.10540 * 11 10 9 38 38 H 1.08998 * 111.10859 * 87.90533 * 12 10 9 39 39 H 1.08998 * 111.00401 * 323.99651 * 12 10 9 40 40 H 1.09002 * 110.37460 * 278.18013 * 13 12 10 41 41 H 1.08999 * 110.37548 * 155.95084 * 13 12 10 42 42 H 1.09011 * 109.46590 * 50.12909 * 15 14 13 43 43 H 1.09004 * 109.47038 * 170.12020 * 15 14 13 44 44 H 0.97003 * 120.00380 * 359.97438 * 18 16 15 45 45 H 0.96997 * 120.00408 * 180.02562 * 22 21 19 46 46 H 1.08999 * 109.88737 * 120.39623 * 27 14 13 47 47 H 1.08997 * 109.88833 * 241.42257 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 -0.5138 5 6 2.2177 1.7713 1.4425 6 6 3.3386 1.2638 -0.7104 7 8 3.7897 0.2043 -1.0913 8 7 4.0255 2.4038 -0.9224 9 6 5.3171 2.3633 -1.6125 10 6 5.8811 3.7812 -1.7230 11 8 6.1084 4.3351 -0.4254 12 6 4.9293 4.6878 -2.5523 13 6 5.9146 5.7483 -3.1038 14 7 7.1552 4.9990 -3.3955 15 6 8.3416 5.8315 -3.1564 16 6 8.4176 6.9109 -4.2052 17 8 7.5673 6.9796 -5.0675 18 7 9.4309 7.7992 -4.1858 19 6 9.5003 8.7809 -5.1403 20 1 8.7427 8.8426 -5.9076 21 6 10.5447 9.6972 -5.1200 22 7 10.6115 10.6379 -6.0352 23 14 11.8539 9.5919 -3.7917 24 1 12.9602 8.7164 -4.2555 25 1 12.3829 10.9504 -3.5092 26 1 11.2594 9.0249 -2.5546 27 6 7.1811 3.7881 -2.5545 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3635 -1.0277 0.0005 31 1 1.2569 1.8015 1.9563 32 1 2.8829 1.0774 1.9563 33 1 2.6615 2.7669 1.4425 34 1 3.6650 3.2511 -0.6174 35 1 5.1828 1.9473 -2.6109 36 1 6.0106 1.7389 -1.0491 37 1 5.3223 4.3539 0.1374 38 1 4.1742 5.1498 -1.9163 39 1 4.4645 4.1275 -3.3635 40 1 6.1029 6.5172 -2.3546 41 1 5.5187 6.1964 -4.0152 42 1 8.2719 6.2884 -2.1691 43 1 9.2368 5.2116 -3.2074 44 1 10.1111 7.7441 -3.4965 45 1 11.3408 11.2773 -6.0213 46 1 7.2229 2.8998 -3.1847 47 1 8.0471 3.8145 -1.8931 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699894691.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:48:19 Heat of formation + Delta-G solvation = -145.722613 kcal Electronic energy + Delta-G solvation = -28466.269554 eV Core-core repulsion = 24263.955424 eV Total energy + Delta-G solvation = -4202.314130 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.69014 -39.74351 -38.31584 -37.85627 -36.01167 -34.70688 -33.89675 -32.39833 -31.69637 -31.14405 -29.51019 -27.46111 -27.30406 -25.63234 -24.12685 -23.68274 -21.58326 -20.83496 -20.49542 -19.35618 -18.45590 -18.25655 -17.55342 -16.80341 -16.32676 -16.09993 -15.85217 -15.49573 -15.28203 -15.23797 -14.85456 -14.66468 -14.40129 -14.01941 -13.79675 -13.54476 -13.26517 -13.21180 -13.01353 -12.91370 -12.74237 -12.57494 -12.33121 -12.30848 -11.96670 -11.71990 -11.66681 -11.52636 -11.29363 -11.16427 -10.91235 -10.57950 -10.52101 -10.23251 -9.96215 -9.93457 -9.55468 -9.53508 -8.58173 -8.16067 -8.01810 -6.29308 -3.80490 2.19248 2.35075 3.04153 3.08498 3.16308 3.43250 3.69383 3.76951 3.91799 4.09647 4.12060 4.24806 4.28737 4.34499 4.43984 4.55535 4.77013 4.86132 4.87036 4.93736 5.07580 5.11981 5.19869 5.21590 5.24324 5.34964 5.40225 5.50970 5.52821 5.56914 5.66875 5.76715 5.81051 5.88783 5.94239 6.04465 6.32660 6.47462 6.96054 7.08734 7.09246 7.22738 7.60458 7.77531 8.16450 8.62598 8.97434 9.44814 9.86334 10.83894 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.035722 B = 0.001980 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.652273 B =14137.967478 C =14312.606689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.069 3.931 4 H 0.088 0.912 5 C -0.171 4.171 6 C 0.515 3.485 7 O -0.514 6.514 8 N -0.728 5.728 9 C 0.104 3.896 10 C 0.098 3.902 11 O -0.544 6.544 12 C -0.154 4.154 13 C 0.056 3.944 14 N -0.500 5.500 15 C 0.038 3.962 16 C 0.454 3.546 17 O -0.560 6.560 18 N -0.593 5.593 19 C -0.303 4.303 20 H 0.119 0.881 21 C 0.041 3.959 22 N -0.883 5.883 23 Si 0.879 3.121 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.270 1.270 27 C 0.057 3.943 28 H 0.044 0.956 29 H 0.045 0.955 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.397 0.603 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.370 0.630 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.047 0.953 41 H 0.096 0.904 42 H 0.054 0.946 43 H 0.089 0.911 44 H 0.370 0.630 45 H 0.273 0.727 46 H 0.095 0.905 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.214 -16.704 17.855 29.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.278 6.278 3 C 0.008 3.992 4 H 0.106 0.894 5 C -0.229 4.229 6 C 0.299 3.701 7 O -0.387 6.387 8 N -0.383 5.383 9 C -0.020 4.020 10 C 0.055 3.945 11 O -0.350 6.350 12 C -0.192 4.192 13 C -0.071 4.071 14 N -0.224 5.224 15 C -0.094 4.094 16 C 0.240 3.760 17 O -0.441 6.441 18 N -0.233 5.233 19 C -0.432 4.432 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.523 5.523 23 Si 0.706 3.294 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.071 4.071 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.110 0.890 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.231 0.769 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.217 0.783 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.065 0.935 41 H 0.114 0.886 42 H 0.072 0.928 43 H 0.108 0.892 44 H 0.202 0.798 45 H 0.083 0.917 46 H 0.113 0.887 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.602 -17.505 16.110 29.010 hybrid contribution 0.229 0.990 2.244 2.463 sum -16.372 -16.515 18.353 29.625 Atomic orbital electron populations 1.22909 0.80366 1.03451 1.00134 1.88060 1.19853 1.24938 1.94923 1.21931 0.93369 0.87154 0.96780 0.89447 1.22239 1.03668 1.01995 0.94959 1.20390 0.86191 0.83958 0.79512 1.90755 1.68996 1.29620 1.49372 1.45857 1.22156 1.09382 1.60945 1.22012 0.84068 0.97157 0.98791 1.22863 0.97065 0.90574 0.83961 1.86663 1.38583 1.84741 1.24983 1.23475 0.97731 0.98029 1.00006 1.22990 0.88677 0.94573 1.00834 1.63363 1.01810 1.05513 1.51706 1.22165 0.94223 0.95583 0.97455 1.19633 0.84175 0.84167 0.88067 1.90545 1.40340 1.74300 1.38921 1.42205 1.24122 1.28634 1.28305 1.19422 1.11393 1.05019 1.07371 0.86305 1.25031 0.97763 0.95980 0.97418 1.69618 1.32476 1.16493 1.33693 0.86678 0.82457 0.78609 0.81679 1.19605 1.20232 1.19541 1.22853 0.95102 0.95665 0.93498 0.93736 0.93682 0.88993 0.91013 0.90903 0.90914 0.76874 0.89710 0.90229 0.78260 0.90698 0.89432 0.93511 0.88552 0.92846 0.89233 0.79751 0.91661 0.88681 0.91106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.82 101.05 1.09 1.24 16 2 O -0.36 -3.32 9.89 -55.09 -0.54 -3.87 16 3 C 0.07 0.47 3.13 -27.88 -0.09 0.38 16 4 H 0.09 0.37 7.79 -51.93 -0.40 -0.04 16 5 C -0.17 -0.76 9.48 37.16 0.35 -0.41 16 6 C 0.51 4.90 7.18 -10.99 -0.08 4.82 16 7 O -0.51 -7.46 16.51 -14.31 -0.24 -7.69 16 8 N -0.73 -4.95 5.09 -60.30 -0.31 -5.26 16 9 C 0.10 0.89 4.75 -4.05 -0.02 0.87 16 10 C 0.10 0.90 0.93 -88.64 -0.08 0.82 16 11 O -0.54 -4.96 13.11 -35.23 -0.46 -5.43 16 12 C -0.15 -1.50 5.73 -24.44 -0.14 -1.64 16 13 C 0.06 0.83 5.76 -2.30 -0.01 0.81 16 14 N -0.50 -7.82 4.85 -232.68 -1.13 -8.95 16 15 C 0.04 0.64 5.07 -4.98 -0.03 0.61 16 16 C 0.45 10.35 7.58 -10.99 -0.08 10.27 16 17 O -0.56 -14.90 14.67 5.54 0.08 -14.82 16 18 N -0.59 -14.21 5.09 -10.97 -0.06 -14.27 16 19 C -0.30 -8.60 10.16 -14.93 -0.15 -8.76 16 20 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 21 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 22 N -0.88 -25.85 13.96 55.50 0.77 -25.08 16 23 Si 0.88 19.48 27.74 -169.99 -4.71 14.77 16 24 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 25 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 26 H -0.27 -5.47 6.52 56.52 0.37 -5.10 16 27 C 0.06 0.68 6.22 -2.83 -0.02 0.66 16 28 H 0.04 0.15 7.87 -51.93 -0.41 -0.25 16 29 H 0.04 0.19 8.09 -51.93 -0.42 -0.23 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.24 7.87 -51.93 -0.41 -0.17 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.17 7.92 -51.93 -0.41 -0.24 16 34 H 0.40 1.49 7.08 -40.82 -0.29 1.21 16 35 H 0.08 0.81 8.09 -51.93 -0.42 0.39 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.37 1.90 8.05 45.56 0.37 2.26 16 38 H 0.07 0.54 8.04 -51.93 -0.42 0.12 16 39 H 0.09 0.86 8.05 -51.93 -0.42 0.44 16 40 H 0.05 0.71 7.61 -51.93 -0.40 0.31 16 41 H 0.10 1.67 7.41 -51.93 -0.38 1.28 16 42 H 0.05 0.84 7.83 -51.92 -0.41 0.43 16 43 H 0.09 1.34 8.01 -51.93 -0.42 0.92 16 44 H 0.37 7.83 5.76 -40.82 -0.24 7.59 16 45 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.10 1.03 7.79 -51.93 -0.40 0.62 16 47 H 0.07 0.82 7.47 -51.93 -0.39 0.44 16 LS Contribution 384.78 15.07 5.80 5.80 Total: -1.00 -37.65 384.78 -6.83 -44.48 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -6.68 Total: 9.60 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: 0.65 Total: 10.71 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: -0.72 Total: -53.55 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -1.16 Total: -31.80 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.71 Total: 14.77 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.65 -6.83 -44.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699894691.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.245 kcal (2) G-P(sol) polarization free energy of solvation -37.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds