Wall clock time and date at job start Tue Mar 31 2020 04:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 H 1.09001 * 109.46882 * 30.00382 * 3 2 1 5 5 C 1.52998 * 109.47307 * 269.99994 * 3 2 1 6 6 C 1.50701 * 109.46777 * 150.00026 * 3 2 1 7 7 O 1.21281 * 120.00439 * 5.00672 * 6 3 2 8 8 N 1.34775 * 119.99947 * 184.99711 * 6 3 2 9 9 C 1.46493 * 120.00347 * 180.02562 * 8 6 3 10 10 C 1.52998 * 109.47795 * 180.02562 * 9 8 6 11 11 O 1.42902 * 110.27497 * 62.90973 * 10 9 8 12 12 C 1.54599 * 110.30408 * 300.72148 * 10 9 8 13 13 C 1.54942 * 102.91882 * 219.12211 * 12 10 9 14 14 N 1.48537 * 103.22842 * 37.41153 * 13 12 10 15 15 C 1.46888 * 111.00144 * 200.27888 * 14 13 12 16 16 C 1.50701 * 109.47422 * 307.39453 * 15 14 13 17 17 O 1.21294 * 119.99704 * 0.02562 * 16 15 14 18 18 N 1.34776 * 120.00000 * 179.97438 * 16 15 14 19 19 C 1.37098 * 119.99881 * 180.02562 * 18 16 15 20 20 H 1.08006 * 119.99810 * 0.02562 * 19 18 16 21 21 C 1.38951 * 120.00280 * 179.97438 * 19 18 16 22 22 N 1.31417 * 119.99812 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00087 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46806 * 60.00730 * 23 21 19 25 25 H 1.48496 * 109.46992 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47115 * 300.00464 * 23 21 19 27 27 C 1.47907 * 105.81881 * 320.79618 * 14 13 12 28 28 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 29 29 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 30 30 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47171 * 179.97438 * 5 3 2 32 32 H 1.09004 * 109.47223 * 300.00490 * 5 3 2 33 33 H 1.08997 * 109.46785 * 60.00007 * 5 3 2 34 34 H 0.97004 * 120.00156 * 0.02562 * 8 6 3 35 35 H 1.09009 * 109.47306 * 300.00494 * 9 8 6 36 36 H 1.09002 * 109.46896 * 60.00194 * 9 8 6 37 37 H 0.96708 * 113.99513 * 300.70586 * 11 10 9 38 38 H 1.08999 * 110.72650 * 337.47306 * 12 10 9 39 39 H 1.08994 * 110.72963 * 100.76665 * 12 10 9 40 40 H 1.09005 * 110.66866 * 278.98095 * 13 12 10 41 41 H 1.08996 * 110.81398 * 155.91627 * 13 12 10 42 42 H 1.09006 * 109.47420 * 67.39991 * 15 14 13 43 43 H 1.09004 * 109.47125 * 187.39533 * 15 14 13 44 44 H 0.96999 * 120.00695 * 0.02562 * 18 16 15 45 45 H 0.96998 * 119.99616 * 179.97438 * 22 21 19 46 46 H 1.09000 * 109.91568 * 265.97493 * 27 14 13 47 47 H 1.08999 * 109.91458 * 144.68342 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2176 1.7715 -1.4425 6 6 3.3386 1.2639 0.7104 7 8 3.7897 0.2045 1.0913 8 7 4.0254 2.4040 0.9224 9 6 5.3170 2.3636 1.6125 10 6 5.8810 3.7815 1.7229 11 8 5.0170 4.5976 2.5165 12 6 6.0624 4.3978 0.3167 13 6 7.3984 5.1716 0.4474 14 7 8.2200 4.2874 1.3131 15 6 9.3167 5.0365 1.9406 16 6 10.0947 5.7714 0.8795 17 8 9.7674 5.6804 -0.2848 18 7 11.1536 6.5305 1.2246 19 6 11.8610 7.1995 0.2594 20 1 11.5695 7.1185 -0.7774 21 6 12.9523 7.9826 0.6151 22 7 13.3067 8.0816 1.8767 23 14 13.9166 8.8935 -0.7001 24 1 13.0156 9.8357 -1.4111 25 1 15.0249 9.6513 -0.0657 26 1 14.4761 7.9172 -1.6691 27 6 7.2944 3.7486 2.3332 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 2.6605 2.7675 -1.4424 32 1 2.8829 1.0776 -1.9564 33 1 1.2568 1.8015 -1.9562 34 1 3.6645 3.2514 0.6180 35 1 5.1826 1.9476 2.6110 36 1 6.0105 1.7393 1.0491 37 1 4.1179 4.6728 2.1685 38 1 6.1415 3.6168 -0.4394 39 1 5.2434 5.0787 0.0853 40 1 7.2382 6.1377 0.9261 41 1 7.8685 5.3001 -0.5276 42 1 8.9068 5.7531 2.6524 43 1 9.9779 4.3443 2.4619 44 1 11.4152 6.6036 2.1558 45 1 14.0687 8.6280 2.1249 46 1 7.3268 4.3692 3.2287 47 1 7.5690 2.7228 2.5789 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699894693.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:48:32 Heat of formation + Delta-G solvation = -150.560352 kcal Electronic energy + Delta-G solvation = -28504.842031 eV Core-core repulsion = 24302.318121 eV Total energy + Delta-G solvation = -4202.523910 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.60598 -39.65318 -38.26510 -37.76148 -35.91357 -34.62496 -33.91329 -32.28101 -31.44599 -30.92580 -29.29137 -27.31119 -27.22264 -25.51294 -24.19669 -23.65356 -21.62601 -20.69202 -20.36267 -19.28752 -18.27316 -17.88944 -17.46222 -16.69956 -16.24247 -16.05785 -15.64256 -15.61816 -15.31153 -15.02947 -14.68747 -14.52811 -14.23222 -14.01499 -13.75070 -13.57039 -13.33264 -13.16136 -13.05267 -12.90068 -12.63464 -12.34931 -12.24082 -11.88667 -11.69739 -11.64076 -11.55978 -11.21837 -11.18042 -10.98250 -10.86804 -10.46279 -10.45228 -10.24177 -10.11065 -9.84731 -9.50171 -9.44465 -8.42369 -8.05662 -7.94006 -6.44001 -3.85098 2.27888 2.44816 3.18229 3.24485 3.28426 3.50839 3.72193 3.86692 4.12941 4.17432 4.28205 4.36133 4.39422 4.49905 4.52019 4.67605 4.82063 4.89871 5.03684 5.05648 5.20206 5.22709 5.23622 5.24966 5.37991 5.52359 5.56255 5.62183 5.66817 5.70113 5.76771 5.90791 5.93930 6.02684 6.19662 6.24061 6.53858 6.58681 7.05543 7.10866 7.21383 7.35123 7.52752 7.86953 8.02896 8.58561 9.15001 9.50814 10.02179 10.73462 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.032538 B = 0.001979 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.313090 B =14143.884063 C =14540.738613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.070 3.930 4 H 0.086 0.914 5 C -0.172 4.172 6 C 0.514 3.486 7 O -0.514 6.514 8 N -0.728 5.728 9 C 0.103 3.897 10 C 0.111 3.889 11 O -0.550 6.550 12 C -0.153 4.153 13 C 0.042 3.958 14 N -0.492 5.492 15 C 0.036 3.964 16 C 0.442 3.558 17 O -0.582 6.582 18 N -0.560 5.560 19 C -0.301 4.301 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.900 5.900 23 Si 0.932 3.068 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.273 1.273 27 C 0.048 3.952 28 H 0.043 0.957 29 H 0.044 0.956 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.397 0.603 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.370 0.630 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.039 0.961 41 H 0.121 0.879 42 H 0.051 0.949 43 H 0.092 0.908 44 H 0.393 0.607 45 H 0.272 0.728 46 H 0.062 0.938 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.576 -8.931 -0.094 26.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C 0.008 3.992 4 H 0.104 0.896 5 C -0.229 4.229 6 C 0.299 3.701 7 O -0.388 6.388 8 N -0.383 5.383 9 C -0.021 4.021 10 C 0.070 3.930 11 O -0.355 6.355 12 C -0.191 4.191 13 C -0.085 4.085 14 N -0.217 5.217 15 C -0.096 4.096 16 C 0.228 3.772 17 O -0.467 6.467 18 N -0.196 5.196 19 C -0.430 4.430 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.541 5.541 23 Si 0.759 3.241 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.081 4.081 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.110 0.890 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.231 0.769 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.217 0.783 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.058 0.942 41 H 0.139 0.861 42 H 0.069 0.931 43 H 0.110 0.890 44 H 0.226 0.774 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -23.374 -10.206 -0.421 25.509 hybrid contribution -0.521 1.826 0.107 1.902 sum -23.895 -8.380 -0.315 25.324 Atomic orbital electron populations 1.22896 0.80480 1.03396 1.00060 1.88068 1.19753 1.25011 1.94926 1.21933 0.93343 0.87023 0.96856 0.89580 1.22245 1.03630 1.02190 0.94880 1.20377 0.86212 0.84001 0.79524 1.90751 1.69048 1.29607 1.49407 1.45864 1.22144 1.09367 1.60875 1.22120 0.84344 0.97378 0.98215 1.22339 0.91076 0.88123 0.91476 1.86659 1.24677 1.71239 1.52895 1.23309 0.99285 1.00465 0.96042 1.23440 0.90538 0.93215 1.01346 1.64724 1.07909 1.33079 1.15945 1.22123 0.94417 0.96853 0.96216 1.19668 0.83981 0.84089 0.89502 1.90427 1.69579 1.67025 1.19705 1.41839 1.25800 1.41568 1.10398 1.19653 1.08685 1.23676 0.91012 0.87916 1.25277 0.97585 0.97948 0.97079 1.69608 1.28114 1.40447 1.15957 0.85906 0.78828 0.79319 0.80090 1.19932 1.20963 1.19864 1.22839 0.88083 1.02054 0.95126 0.93790 0.93737 0.89042 0.90795 0.90801 0.91082 0.76906 0.90420 0.89533 0.78266 0.89739 0.90835 0.94229 0.86117 0.93082 0.89011 0.77399 0.91769 0.91953 0.89060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.82 101.05 1.09 1.25 16 2 O -0.36 -3.55 9.89 -55.09 -0.54 -4.10 16 3 C 0.07 0.52 3.13 -27.88 -0.09 0.44 16 4 H 0.09 0.39 7.79 -51.93 -0.40 -0.01 16 5 C -0.17 -0.98 9.48 37.16 0.35 -0.62 16 6 C 0.51 5.39 7.18 -10.99 -0.08 5.31 16 7 O -0.51 -7.97 16.51 -14.30 -0.24 -8.20 16 8 N -0.73 -5.77 5.08 -60.30 -0.31 -6.07 16 9 C 0.10 1.03 4.50 -4.05 -0.02 1.01 16 10 C 0.11 1.18 1.05 -89.27 -0.09 1.09 16 11 O -0.55 -5.52 12.95 -35.23 -0.46 -5.98 16 12 C -0.15 -1.71 5.64 -24.87 -0.14 -1.85 16 13 C 0.04 0.67 5.31 -1.89 -0.01 0.66 16 14 N -0.49 -8.10 5.26 -231.89 -1.22 -9.32 16 15 C 0.04 0.64 5.52 -4.98 -0.03 0.61 16 16 C 0.44 10.27 7.49 -10.99 -0.08 10.19 16 17 O -0.58 -15.11 13.09 5.55 0.07 -15.04 16 18 N -0.56 -14.06 5.29 -10.96 -0.06 -14.12 16 19 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 20 H 0.10 2.95 7.16 -52.48 -0.38 2.57 16 21 C 0.02 0.61 5.50 -17.46 -0.10 0.52 16 22 N -0.90 -24.33 13.05 55.50 0.72 -23.60 16 23 Si 0.93 20.87 29.55 -169.99 -5.02 15.85 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 C 0.05 0.62 6.18 -2.75 -0.02 0.61 16 28 H 0.04 0.20 8.08 -51.93 -0.42 -0.22 16 29 H 0.04 0.18 7.87 -51.93 -0.41 -0.23 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.29 7.93 -51.93 -0.41 -0.12 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.31 7.87 -51.93 -0.41 -0.10 16 34 H 0.40 1.91 7.12 -40.82 -0.29 1.62 16 35 H 0.08 0.83 8.14 -51.92 -0.42 0.41 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.37 2.18 8.14 45.56 0.37 2.55 16 38 H 0.08 0.95 7.86 -51.93 -0.41 0.54 16 39 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 40 H 0.04 0.67 8.02 -51.93 -0.42 0.26 16 41 H 0.12 2.34 5.96 -51.93 -0.31 2.03 16 42 H 0.05 0.86 7.81 -51.93 -0.41 0.45 16 43 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 44 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 45 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 46 H 0.06 0.83 7.39 -51.93 -0.38 0.45 16 47 H 0.09 1.08 7.68 -51.93 -0.40 0.69 16 LS Contribution 385.12 15.07 5.80 5.80 Total: -1.00 -35.24 385.12 -7.26 -42.50 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -6.66 Total: 11.51 kcal Atomic # 6 Polarization: 10.13 SS G_CDS: 0.65 Total: 10.77 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: -0.86 Total: -53.12 kcal Atomic # 8 Polarization: -32.15 SS G_CDS: -1.16 Total: -33.31 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.24 -7.26 -42.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699894693.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.065 kcal (2) G-P(sol) polarization free energy of solvation -35.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds