Wall clock time and date at job start Tue Mar 31 2020 04:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42904 * 114.00041 * 2 1 4 4 C 1.50700 * 109.46897 * 180.02562 * 3 2 1 5 5 O 1.21285 * 120.00307 * 359.97438 * 4 3 2 6 6 N 1.34780 * 120.00020 * 180.02562 * 4 3 2 7 7 C 1.46508 * 119.99499 * 359.97438 * 6 4 3 8 8 C 1.46491 * 120.00021 * 179.97438 * 6 4 3 9 9 C 1.50702 * 109.46957 * 269.99631 * 8 6 4 10 10 O 1.21283 * 120.00262 * 0.02562 * 9 8 6 11 11 N 1.34777 * 119.99928 * 179.72354 * 9 8 6 12 12 C 1.46499 * 120.00199 * 180.27479 * 11 9 8 13 13 C 1.52997 * 109.47555 * 180.02562 * 12 11 9 14 14 O 1.42898 * 110.88884 * 297.57865 * 13 12 11 15 15 C 1.55159 * 111.00665 * 173.65177 * 13 12 11 16 16 C 1.54325 * 102.93964 * 206.42794 * 15 13 12 17 17 N 1.47021 * 107.27374 * 22.19175 * 16 15 13 18 18 C 1.36940 * 125.64549 * 181.09817 * 17 16 15 19 19 H 1.08000 * 119.99598 * 179.97438 * 18 17 16 20 20 C 1.38811 * 120.00060 * 359.95273 * 18 17 16 21 21 N 1.31617 * 120.00088 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99662 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47604 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47142 * 120.00569 * 22 20 18 25 25 H 1.48507 * 109.47061 * 239.99984 * 22 20 18 26 26 C 1.47418 * 108.70123 * 1.05974 * 17 16 15 27 27 H 1.08998 * 109.47207 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46783 * 299.99919 * 1 2 3 29 29 H 1.09000 * 109.47262 * 59.99403 * 1 2 3 30 30 H 1.08995 * 109.47286 * 59.99991 * 3 2 1 31 31 H 1.09003 * 109.46897 * 300.00256 * 3 2 1 32 32 H 1.09003 * 109.46567 * 269.99816 * 7 6 4 33 33 H 1.08997 * 109.47260 * 29.99912 * 7 6 4 34 34 H 1.08999 * 109.46561 * 150.00345 * 7 6 4 35 35 H 1.09004 * 109.47166 * 149.99897 * 8 6 4 36 36 H 1.08994 * 109.47507 * 29.99603 * 8 6 4 37 37 H 0.97000 * 120.00317 * 0.28382 * 11 9 8 38 38 H 1.08998 * 109.47134 * 300.00670 * 12 11 9 39 39 H 1.09002 * 109.46857 * 59.99862 * 12 11 9 40 40 H 0.96703 * 113.99982 * 59.28787 * 14 13 12 41 41 H 1.09001 * 110.71900 * 324.78868 * 15 13 12 42 42 H 1.08998 * 110.71745 * 88.06456 * 15 13 12 43 43 H 1.08995 * 109.87908 * 262.77225 * 16 15 13 44 44 H 1.09001 * 109.88246 * 141.61179 * 16 15 13 45 45 H 0.96997 * 119.99959 * 179.97438 * 21 20 18 46 46 H 1.09002 * 110.36689 * 217.02678 * 26 17 16 47 47 H 1.08999 * 110.45811 * 94.75957 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1864 -0.0006 5 8 4.0342 0.0915 -0.0006 6 7 4.2766 2.2968 -0.0002 7 6 3.6465 3.6194 0.0003 8 6 5.7369 2.1810 -0.0003 9 6 6.2377 2.1409 1.4206 10 8 5.4520 2.2024 2.3424 11 7 7.5582 2.0305 1.6668 12 6 8.0445 1.9855 3.0480 13 6 9.5693 1.8596 3.0480 14 8 9.9799 0.6406 2.4257 15 6 10.1363 1.9684 4.4882 16 6 11.5662 2.5010 4.2573 17 7 11.5800 3.1589 2.9426 18 6 12.6692 3.7449 2.3548 19 1 12.5761 4.2036 1.3815 20 6 13.8929 3.7496 3.0101 21 7 14.0064 3.1905 4.1962 22 14 15.3785 4.5496 2.2086 23 1 14.9898 5.1027 0.8864 24 1 15.8783 5.6464 3.0760 25 1 16.4485 3.5360 2.0264 26 6 10.2273 3.0825 2.3616 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.6887 1.8464 0.8899 31 1 1.6886 1.8464 -0.8900 32 1 3.4903 3.9478 -1.0273 33 1 2.6868 3.5645 0.5141 34 1 4.2938 4.3299 0.5143 35 1 6.1695 3.0397 -0.5138 36 1 6.0289 1.2654 -0.5143 37 1 8.1866 1.9811 0.9296 38 1 7.7558 2.9006 3.5649 39 1 7.6087 1.1268 3.5588 40 1 9.6903 0.5507 1.5075 41 1 9.5530 2.6737 5.0801 42 1 10.1620 0.9897 4.9674 43 1 12.2757 1.6736 4.2652 44 1 11.8239 3.2204 5.0346 45 1 14.8616 3.1935 4.6540 46 1 10.2854 2.9271 1.2842 47 1 9.6656 3.9899 2.5834 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699897410.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:34 Heat of formation + Delta-G solvation = -118.880040 kcal Electronic energy + Delta-G solvation = -28685.187005 eV Core-core repulsion = 24484.036856 eV Total energy + Delta-G solvation = -4201.150149 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -40.63432 -39.55837 -38.43054 -37.70277 -35.74873 -35.08778 -34.13354 -32.14047 -30.73879 -29.59751 -28.70766 -27.82956 -26.82314 -25.97138 -25.24073 -23.47860 -21.16971 -20.13714 -20.04232 -19.63149 -17.92269 -17.74071 -17.13923 -16.90215 -16.69968 -16.35520 -15.94752 -15.50175 -15.24848 -14.97622 -14.72128 -14.61537 -14.21437 -13.98319 -13.61187 -13.46473 -13.34955 -13.28507 -12.91377 -12.84706 -12.60232 -12.50048 -12.01000 -11.92768 -11.82934 -11.70645 -11.00844 -10.91197 -10.72549 -10.41299 -10.30988 -10.21841 -10.11104 -10.10024 -9.98248 -9.77129 -9.43844 -9.11475 -9.01341 -8.60679 -6.84679 -5.72817 -3.06606 2.13541 2.34972 2.53580 3.14983 3.38480 3.43107 3.46287 3.51754 4.17949 4.45044 4.50233 4.54285 4.60364 4.64348 4.76233 4.78255 4.89268 4.89934 4.94025 4.99937 5.13120 5.14258 5.25376 5.27869 5.37347 5.50905 5.65025 5.81698 5.88021 5.97385 6.16299 6.30352 6.34436 6.43647 6.52776 6.53953 6.60207 6.91573 7.35823 7.52379 7.63589 7.82434 7.82842 7.99900 8.11972 8.23995 9.19318 9.79576 10.44780 11.38926 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.029163 B = 0.002134 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.897279 B =13115.727347 C =13515.987866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.048 3.952 4 C 0.520 3.480 5 O -0.513 6.513 6 N -0.600 5.600 7 C 0.079 3.921 8 C 0.097 3.903 9 C 0.497 3.503 10 O -0.534 6.534 11 N -0.724 5.724 12 C 0.106 3.894 13 C 0.102 3.898 14 O -0.536 6.536 15 C -0.128 4.128 16 C 0.181 3.819 17 N -0.598 5.598 18 C -0.230 4.230 19 H 0.078 0.922 20 C -0.008 4.008 21 N -0.919 5.919 22 Si 0.913 3.087 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.290 1.290 26 C 0.118 3.882 27 H 0.092 0.908 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.400 0.600 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.364 0.636 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.051 0.949 44 H 0.044 0.956 45 H 0.252 0.748 46 H 0.038 0.962 47 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.399 0.440 -10.216 27.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.032 4.032 4 C 0.307 3.693 5 O -0.387 6.387 6 N -0.335 5.335 7 C -0.064 4.064 8 C -0.030 4.030 9 C 0.282 3.718 10 O -0.410 6.410 11 N -0.378 5.378 12 C -0.019 4.019 13 C 0.059 3.941 14 O -0.340 6.340 15 C -0.167 4.167 16 C 0.057 3.943 17 N -0.324 5.324 18 C -0.358 4.358 19 H 0.095 0.905 20 C -0.204 4.204 21 N -0.566 5.566 22 Si 0.743 3.257 23 H -0.206 1.206 24 H -0.218 1.218 25 H -0.217 1.217 26 C -0.009 4.009 27 H 0.110 0.890 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.130 0.870 36 H 0.134 0.866 37 H 0.234 0.766 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.210 0.790 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.069 0.931 44 H 0.062 0.938 45 H 0.063 0.937 46 H 0.056 0.944 47 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -25.088 -0.350 -8.891 26.619 hybrid contribution 0.686 0.925 -1.169 1.640 sum -24.402 0.575 -10.059 26.401 Atomic orbital electron populations 1.22848 0.80233 1.03442 1.00128 1.88027 1.19891 1.25178 1.95411 1.22242 0.91359 0.87036 1.02577 1.20243 0.88843 0.84026 0.76164 1.90746 1.74399 1.26147 1.47377 1.47281 1.05176 1.06714 1.74378 1.21882 0.99147 0.83526 1.01860 1.21325 0.80970 1.06037 0.94626 1.21101 0.82400 0.76329 0.92015 1.90698 1.55169 1.49031 1.46105 1.45958 1.07329 1.75007 1.09457 1.22033 0.94546 1.02861 0.82426 1.22716 0.89262 0.85725 0.96348 1.86650 1.79593 1.38510 1.29257 1.22909 1.00013 1.01419 0.92354 1.21141 0.89467 0.96307 0.87407 1.44349 1.04027 1.66481 1.17571 1.19063 0.86742 1.29297 1.00724 0.90462 1.24817 0.97752 1.00917 0.96921 1.69971 1.24005 1.48709 1.13949 0.86035 0.82878 0.78503 0.78236 1.20555 1.21759 1.21719 1.22117 0.88525 0.94200 0.96062 0.88989 0.93718 0.93785 0.89937 0.90163 0.91943 0.90866 0.90401 0.86954 0.86567 0.76604 0.90477 0.90838 0.79033 0.90952 0.90920 0.93106 0.93777 0.93732 0.94421 0.95684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.30 16 2 O -0.37 -3.99 10.24 -55.14 -0.56 -4.55 16 3 C 0.05 0.40 4.97 36.01 0.18 0.58 16 4 C 0.52 6.18 7.75 -10.98 -0.09 6.09 16 5 O -0.51 -8.46 16.08 -14.36 -0.23 -8.69 16 6 N -0.60 -5.58 2.36 -182.95 -0.43 -6.02 16 7 C 0.08 0.42 10.24 59.85 0.61 1.04 16 8 C 0.10 0.87 5.89 -5.20 -0.03 0.84 16 9 C 0.50 6.28 7.90 -10.98 -0.09 6.19 16 10 O -0.53 -8.85 16.43 5.55 0.09 -8.76 16 11 N -0.72 -8.56 5.17 -60.29 -0.31 -8.87 16 12 C 0.11 1.52 4.89 -4.04 -0.02 1.50 16 13 C 0.10 1.73 0.95 -88.47 -0.08 1.64 16 14 O -0.54 -9.36 13.19 -35.23 -0.46 -9.82 16 15 C -0.13 -2.43 6.16 -24.89 -0.15 -2.58 16 16 C 0.18 4.45 5.37 -3.06 -0.02 4.43 16 17 N -0.60 -15.05 3.39 -170.08 -0.58 -15.63 16 18 C -0.23 -6.35 10.28 -15.06 -0.15 -6.50 16 19 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 20 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 21 N -0.92 -27.12 10.31 55.49 0.57 -26.55 16 22 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 C 0.12 2.28 5.93 -2.53 -0.02 2.26 16 27 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.08 0.55 7.40 -51.93 -0.38 0.16 16 31 H 0.08 0.41 8.11 -51.93 -0.42 -0.01 16 32 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.07 0.31 6.44 -51.93 -0.33 -0.03 16 34 H 0.08 0.43 8.07 -51.93 -0.42 0.01 16 35 H 0.11 0.61 8.07 -51.93 -0.42 0.19 16 36 H 0.12 1.06 7.42 -51.93 -0.39 0.67 16 37 H 0.40 3.77 7.30 -40.82 -0.30 3.47 16 38 H 0.08 1.14 8.11 -51.93 -0.42 0.72 16 39 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 40 H 0.36 4.79 8.16 45.56 0.37 5.16 16 41 H 0.07 1.23 8.01 -51.93 -0.42 0.81 16 42 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 43 H 0.05 1.41 7.38 -51.93 -0.38 1.03 16 44 H 0.04 1.18 7.51 -51.93 -0.39 0.79 16 45 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 46 H 0.04 0.67 7.97 -51.93 -0.41 0.26 16 47 H 0.03 0.48 8.03 -51.93 -0.42 0.07 16 LS Contribution 387.84 15.07 5.84 5.84 Total: -1.00 -39.44 387.84 -6.75 -46.18 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -6.81 Total: 3.40 kcal Atomic # 6 Polarization: 15.32 SS G_CDS: 1.16 Total: 16.48 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: -0.75 Total: -57.07 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -1.17 Total: -31.82 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -39.44 -6.75 -46.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699897410.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.695 kcal (2) G-P(sol) polarization free energy of solvation -39.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds