Wall clock time and date at job start Tue Mar 31 2020 04:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00432 * 2 1 4 4 C 1.50694 * 109.47312 * 180.02562 * 3 2 1 5 5 O 1.21277 * 120.00223 * 359.97438 * 4 3 2 6 6 N 1.34784 * 119.99808 * 179.97438 * 4 3 2 7 7 C 1.46498 * 119.99958 * 0.02562 * 6 4 3 8 8 C 1.46497 * 119.99776 * 179.97438 * 6 4 3 9 9 C 1.50700 * 109.46892 * 90.00418 * 8 6 4 10 10 O 1.21280 * 120.00334 * 0.02562 * 9 8 6 11 11 N 1.34775 * 120.00106 * 179.97438 * 9 8 6 12 12 C 1.46502 * 120.00093 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.46910 * 180.02562 * 12 11 9 14 14 O 1.42902 * 110.64496 * 61.86158 * 13 12 11 15 15 C 1.55164 * 110.71971 * 185.00159 * 13 12 11 16 16 C 1.54909 * 101.58094 * 153.86263 * 15 13 12 17 17 N 1.47415 * 104.83420 * 322.99222 * 16 15 13 18 18 C 1.36942 * 125.64705 * 204.09149 * 17 16 15 19 19 H 1.07995 * 120.00118 * 6.64958 * 18 17 16 20 20 C 1.38811 * 120.00079 * 186.64578 * 18 17 16 21 21 N 1.31624 * 119.99877 * 7.37948 * 20 18 17 22 22 Si 1.86797 * 120.00410 * 187.37534 * 20 18 17 23 23 H 1.48501 * 109.47081 * 84.98661 * 22 20 18 24 24 H 1.48491 * 109.47599 * 204.99000 * 22 20 18 25 25 H 1.48499 * 109.46887 * 324.99289 * 22 20 18 26 26 C 1.47021 * 108.70683 * 24.35404 * 17 16 15 27 27 H 1.09001 * 109.47305 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47015 * 299.99795 * 1 2 3 29 29 H 1.08996 * 109.47286 * 59.99720 * 1 2 3 30 30 H 1.09004 * 109.46888 * 59.99484 * 3 2 1 31 31 H 1.09008 * 109.46617 * 300.00214 * 3 2 1 32 32 H 1.09002 * 109.46913 * 269.99781 * 7 6 4 33 33 H 1.08997 * 109.47593 * 29.99317 * 7 6 4 34 34 H 1.08995 * 109.47452 * 149.99941 * 7 6 4 35 35 H 1.09000 * 109.47709 * 330.00209 * 8 6 4 36 36 H 1.09005 * 109.47196 * 210.00151 * 8 6 4 37 37 H 0.97005 * 119.99900 * 0.02562 * 11 9 8 38 38 H 1.08997 * 109.46806 * 60.01002 * 12 11 9 39 39 H 1.08998 * 109.47401 * 300.00437 * 12 11 9 40 40 H 0.96706 * 113.99241 * 303.14348 * 14 13 12 41 41 H 1.09004 * 111.00265 * 35.79061 * 15 13 12 42 42 H 1.09001 * 111.00415 * 271.94323 * 15 13 12 43 43 H 1.09005 * 110.36239 * 204.14798 * 16 15 13 44 44 H 1.09001 * 110.36437 * 81.83246 * 16 15 13 45 45 H 0.97004 * 119.99892 * 179.97438 * 21 20 18 46 46 H 1.09003 * 109.88440 * 118.12975 * 26 17 16 47 47 H 1.08997 * 109.88761 * 239.30090 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 8 4.0341 0.0915 -0.0006 6 7 4.2765 2.2968 -0.0013 7 6 3.6465 3.6194 -0.0008 8 6 5.7369 2.1810 -0.0013 9 6 6.2375 2.1407 -1.4222 10 8 5.4518 2.2030 -2.3440 11 7 7.5584 2.0364 -1.6686 12 6 8.0450 1.9967 -3.0498 13 6 9.5703 1.8759 -3.0499 14 8 9.9795 0.6612 -2.4182 15 6 10.1274 1.9574 -4.4958 16 6 11.5586 2.4957 -4.2477 17 7 11.4148 3.4510 -3.1342 18 6 12.2596 4.4942 -2.8636 19 1 13.0556 4.7370 -3.5519 20 6 12.0928 5.2398 -1.7046 21 7 11.2196 4.8582 -0.7967 22 14 13.1076 6.7844 -1.4334 23 1 12.4455 7.9349 -2.0992 24 1 13.2207 7.0532 0.0226 25 1 14.4634 6.5932 -2.0083 26 6 10.2178 3.0945 -2.3586 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8463 -0.8901 32 1 3.4894 3.9474 -1.0283 33 1 2.6871 3.5647 0.5137 34 1 4.2941 4.3301 0.5125 35 1 6.0289 1.2654 0.5129 36 1 6.1695 3.0398 0.5121 37 1 8.1869 1.9870 -0.9313 38 1 7.7528 2.9120 -3.5644 39 1 7.6129 1.1375 -3.5628 40 1 9.6573 0.5613 -1.5119 41 1 9.5467 2.6551 -5.0994 42 1 10.1556 0.9715 -4.9598 43 1 11.9325 3.0031 -5.1371 44 1 12.2263 1.6817 -3.9654 45 1 11.1033 5.3790 0.0134 46 1 10.5006 2.8370 -1.3379 47 1 9.5178 3.9299 -2.3521 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699897411.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:39 Heat of formation + Delta-G solvation = -121.450753 kcal Electronic energy + Delta-G solvation = -29035.845094 eV Core-core repulsion = 24834.583471 eV Total energy + Delta-G solvation = -4201.261624 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.48234 -39.42598 -38.34446 -37.60774 -35.61470 -35.05554 -33.96451 -32.25077 -30.65312 -29.47978 -28.44649 -27.71347 -26.73062 -25.99692 -25.18892 -23.49015 -21.02311 -20.18463 -19.85424 -19.53239 -17.82265 -17.64908 -17.00225 -16.87477 -16.57100 -16.31001 -15.94443 -15.37184 -15.11619 -14.95710 -14.49637 -14.43991 -14.03858 -13.91294 -13.57253 -13.30749 -13.19453 -13.13338 -12.87116 -12.74809 -12.53470 -12.28649 -12.22776 -11.83795 -11.73040 -11.63994 -11.21958 -10.86886 -10.64269 -10.48415 -10.34573 -10.14768 -10.07302 -10.02526 -9.92649 -9.81191 -9.29075 -8.89732 -8.85723 -8.69616 -6.88335 -5.78763 -3.12090 2.26614 2.48303 2.73785 3.33280 3.36194 3.41459 3.42510 3.63523 4.28880 4.43859 4.58886 4.60914 4.76795 4.81832 4.82635 4.95081 5.01071 5.01169 5.02593 5.18442 5.26654 5.31552 5.31999 5.44890 5.47088 5.49080 5.62077 5.90026 5.96152 6.03990 6.14867 6.29596 6.44375 6.55020 6.61587 6.63965 6.90486 7.05320 7.20641 7.46336 7.58125 7.67466 7.94983 8.08805 8.17673 8.32190 9.13826 9.75229 10.41582 11.32556 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.018163 B = 0.002599 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.214479 B =10771.165960 C =11812.536020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.048 3.952 4 C 0.520 3.480 5 O -0.515 6.515 6 N -0.599 5.599 7 C 0.076 3.924 8 C 0.097 3.903 9 C 0.499 3.501 10 O -0.539 6.539 11 N -0.720 5.720 12 C 0.110 3.890 13 C 0.087 3.913 14 O -0.549 6.549 15 C -0.115 4.115 16 C 0.135 3.865 17 N -0.602 5.602 18 C -0.224 4.224 19 H 0.079 0.921 20 C -0.010 4.010 21 N -0.924 5.924 22 Si 0.913 3.087 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.160 3.840 27 H 0.091 0.909 28 H 0.043 0.957 29 H 0.044 0.956 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.403 0.597 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.368 0.632 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.041 0.959 44 H 0.025 0.975 45 H 0.251 0.749 46 H 0.064 0.936 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.015 -3.893 3.776 19.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C -0.032 4.032 4 C 0.307 3.693 5 O -0.389 6.389 6 N -0.334 5.334 7 C -0.067 4.067 8 C -0.030 4.030 9 C 0.284 3.716 10 O -0.416 6.416 11 N -0.373 5.373 12 C -0.014 4.014 13 C 0.045 3.955 14 O -0.354 6.354 15 C -0.154 4.154 16 C 0.009 3.991 17 N -0.329 5.329 18 C -0.352 4.352 19 H 0.097 0.903 20 C -0.206 4.206 21 N -0.572 5.572 22 Si 0.744 3.256 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.034 3.966 27 H 0.110 0.890 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.238 0.762 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.215 0.785 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.060 0.940 44 H 0.043 0.957 45 H 0.061 0.939 46 H 0.082 0.918 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -18.871 -4.551 2.689 19.597 hybrid contribution 0.332 1.392 1.041 1.770 sum -18.539 -3.159 3.730 19.172 Atomic orbital electron populations 1.22840 0.80333 1.03366 1.00106 1.88021 1.19810 1.25270 1.95408 1.22253 0.91475 0.86938 1.02551 1.20199 0.88769 0.84047 0.76249 1.90734 1.74412 1.26157 1.47596 1.47271 1.05291 1.06657 1.74139 1.21925 0.98522 0.83433 1.02836 1.21354 0.80687 1.06138 0.94792 1.21045 0.82419 0.76211 0.91930 1.90674 1.55307 1.49476 1.46137 1.45897 1.07284 1.74646 1.09460 1.21952 0.94322 1.02433 0.82696 1.22901 0.90245 0.86758 0.95572 1.86532 1.77793 1.40022 1.31088 1.22702 0.98358 1.01020 0.93290 1.21562 0.93453 0.92409 0.91629 1.44390 1.27519 1.31361 1.29587 1.19088 1.08584 1.04086 1.03485 0.90335 1.24784 0.99721 0.99903 0.96219 1.69900 1.38353 1.39577 1.09394 0.86106 0.79544 0.83026 0.76915 1.21627 1.21728 1.20723 1.21799 0.88322 0.91338 0.95097 0.89046 0.93832 0.93737 0.90201 0.89960 0.91690 0.90943 0.90299 0.86657 0.86747 0.76178 0.90640 0.91309 0.78523 0.90294 0.90894 0.94044 0.95719 0.93854 0.91812 0.94309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.37 -4.31 10.24 -55.14 -0.56 -4.88 16 3 C 0.05 0.45 4.97 36.00 0.18 0.63 16 4 C 0.52 6.89 7.75 -10.98 -0.09 6.80 16 5 O -0.52 -9.11 16.08 -14.35 -0.23 -9.34 16 6 N -0.60 -6.65 2.36 -182.96 -0.43 -7.08 16 7 C 0.08 0.55 10.29 59.85 0.62 1.16 16 8 C 0.10 1.10 5.93 -5.20 -0.03 1.07 16 9 C 0.50 7.49 7.90 -10.99 -0.09 7.40 16 10 O -0.54 -9.97 16.43 5.56 0.09 -9.88 16 11 N -0.72 -10.45 5.13 -60.29 -0.31 -10.76 16 12 C 0.11 1.80 4.74 -4.04 -0.02 1.78 16 13 C 0.09 1.56 0.93 -88.77 -0.08 1.48 16 14 O -0.55 -9.67 13.10 -35.23 -0.46 -10.13 16 15 C -0.11 -2.04 6.26 -24.58 -0.15 -2.19 16 16 C 0.14 2.84 7.22 -2.53 -0.02 2.82 16 17 N -0.60 -15.09 3.39 -170.07 -0.58 -15.67 16 18 C -0.22 -6.14 10.26 -15.06 -0.15 -6.29 16 19 H 0.08 2.09 7.84 -52.49 -0.41 1.68 16 20 C -0.01 -0.28 5.45 -17.43 -0.09 -0.38 16 21 N -0.92 -25.66 10.48 55.49 0.58 -25.08 16 22 Si 0.91 21.61 29.56 -169.99 -5.02 16.59 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 C 0.16 3.60 4.22 -3.06 -0.01 3.58 16 27 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.08 0.49 7.40 -51.93 -0.38 0.11 16 31 H 0.08 0.65 8.11 -51.92 -0.42 0.23 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.32 6.44 -51.93 -0.33 -0.02 16 34 H 0.08 0.46 7.89 -51.93 -0.41 0.05 16 35 H 0.12 1.29 7.42 -51.93 -0.39 0.90 16 36 H 0.11 0.97 7.89 -51.93 -0.41 0.56 16 37 H 0.40 5.21 7.38 -40.82 -0.30 4.91 16 38 H 0.08 1.31 8.13 -51.93 -0.42 0.89 16 39 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 40 H 0.37 5.25 8.05 45.56 0.37 5.62 16 41 H 0.08 1.31 8.04 -51.93 -0.42 0.89 16 42 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 46 H 0.06 1.58 6.92 -51.93 -0.36 1.22 16 47 H 0.04 0.96 7.59 -51.93 -0.39 0.56 16 LS Contribution 387.56 15.07 5.84 5.84 Total: -1.00 -37.72 387.56 -6.72 -44.44 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -6.80 Total: 6.77 kcal Atomic # 6 Polarization: 18.03 SS G_CDS: 1.17 Total: 19.19 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: -0.74 Total: -58.59 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -1.17 Total: -34.23 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.72 -6.72 -44.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699897411.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.015 kcal (2) G-P(sol) polarization free energy of solvation -37.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds