Wall clock time and date at job start Tue Mar 31 2020 04:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 114.00009 * 2 1 4 4 C 1.50696 * 109.46915 * 180.02562 * 3 2 1 5 5 O 1.21284 * 120.00691 * 359.97438 * 4 3 2 6 6 N 1.34776 * 119.99902 * 180.02562 * 4 3 2 7 7 C 1.46505 * 120.00278 * 174.75127 * 6 4 3 8 8 C 1.52997 * 109.50091 * 302.90842 * 7 6 4 9 9 O 1.42907 * 109.47328 * 305.44672 * 8 7 6 10 10 C 1.53118 * 109.50400 * 182.82947 * 7 6 4 11 11 C 1.53117 * 109.16239 * 297.71430 * 10 7 6 12 12 C 1.53034 * 109.27454 * 302.34423 * 11 10 7 13 13 N 1.46850 * 109.52514 * 59.18050 * 12 11 10 14 14 C 1.46903 * 110.99938 * 174.15789 * 13 12 11 15 15 C 1.50697 * 109.47034 * 66.05163 * 14 13 12 16 16 O 1.21293 * 120.00236 * 359.97438 * 15 14 13 17 17 N 1.34776 * 120.00107 * 180.02562 * 15 14 13 18 18 C 1.37097 * 120.00259 * 179.97438 * 17 15 14 19 19 H 1.08003 * 120.00167 * 0.02562 * 18 17 15 20 20 C 1.38954 * 120.00097 * 179.97438 * 18 17 15 21 21 N 1.31405 * 119.99952 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99739 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.46873 * 90.00571 * 22 20 18 24 24 H 1.48505 * 109.46818 * 209.99877 * 22 20 18 25 25 H 1.48493 * 109.47289 * 329.99909 * 22 20 18 26 26 C 1.46848 * 111.19643 * 298.25563 * 13 12 11 27 27 H 1.08995 * 109.47237 * 300.00020 * 1 2 3 28 28 H 1.09001 * 109.47513 * 60.00313 * 1 2 3 29 29 H 1.08997 * 109.47080 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46957 * 59.99804 * 3 2 1 31 31 H 1.09000 * 109.46516 * 299.99778 * 3 2 1 32 32 H 0.97000 * 120.00133 * 354.74387 * 6 4 3 33 33 H 1.08998 * 109.47313 * 65.44497 * 8 7 6 34 34 H 1.09000 * 109.47262 * 185.45002 * 8 7 6 35 35 H 0.96693 * 114.00110 * 179.97438 * 9 8 7 36 36 H 1.09006 * 109.52081 * 57.61507 * 10 7 6 37 37 H 1.09002 * 109.52453 * 177.74324 * 10 7 6 38 38 H 1.09000 * 109.50479 * 62.28674 * 11 10 7 39 39 H 1.09003 * 109.50495 * 182.40365 * 11 10 7 40 40 H 1.09007 * 109.46216 * 179.19732 * 12 11 10 41 41 H 1.08998 * 109.46769 * 299.16566 * 12 11 10 42 42 H 1.09000 * 109.46742 * 186.04663 * 14 13 12 43 43 H 1.08993 * 109.47289 * 306.04363 * 14 13 12 44 44 H 0.97005 * 119.99652 * 359.97438 * 17 15 14 45 45 H 0.97002 * 120.00020 * 179.97438 * 21 20 18 46 46 H 1.09000 * 109.46366 * 301.72623 * 26 13 12 47 47 H 1.08998 * 109.45963 * 181.75384 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 -0.0006 5 8 4.0341 0.0915 -0.0006 6 7 4.2764 2.2968 -0.0002 7 6 5.7326 2.1841 0.1152 8 6 6.0862 1.4266 1.3966 9 8 5.4660 2.0656 2.5143 10 6 6.3516 3.5838 0.1614 11 6 6.0428 4.3133 -1.1489 12 6 6.5854 3.4949 -2.3227 13 7 5.9623 2.1652 -2.3234 14 6 6.3545 1.4006 -3.5149 15 6 7.8310 1.1046 -3.4582 16 8 8.4917 1.4927 -2.5180 17 7 8.4177 0.4094 -4.4527 18 6 9.7610 0.1405 -4.4014 19 1 10.3492 0.4853 -3.5638 20 6 10.3657 -0.5767 -5.4265 21 7 11.6532 -0.8349 -5.3770 22 14 9.3483 -1.1738 -6.8748 23 1 9.3446 -0.1370 -7.9380 24 1 9.9364 -2.4284 -7.4091 25 1 7.9554 -1.4307 -6.4289 26 6 6.2841 1.4274 -1.0952 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.8622 3.1706 -0.0765 33 1 5.7297 0.3993 1.3216 34 1 7.1678 1.4269 1.5322 35 1 5.6471 1.6377 3.3623 36 1 5.9290 4.1416 0.9971 37 1 7.4311 3.5007 0.2875 38 1 4.9644 4.4307 -1.2547 39 1 6.5171 5.2947 -1.1395 40 1 6.3546 4.0046 -3.2583 41 1 7.6657 3.3896 -2.2236 42 1 5.7971 0.4644 -3.5456 43 1 6.1349 1.9836 -4.4093 44 1 7.8893 0.0993 -5.2049 45 1 12.0752 -1.3359 -6.0924 46 1 7.3658 1.3318 -1.0018 47 1 5.8344 0.4354 -1.1391 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699996980.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:16 Heat of formation + Delta-G solvation = -142.931346 kcal Electronic energy + Delta-G solvation = -30260.580023 eV Core-core repulsion = 26058.386931 eV Total energy + Delta-G solvation = -4202.193092 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.61344 -39.10595 -38.08933 -37.04064 -36.36760 -34.48133 -33.74376 -32.35179 -31.70762 -30.93644 -28.52959 -27.57740 -25.95895 -25.68931 -24.57423 -22.79660 -21.66214 -20.75188 -19.44306 -19.13143 -18.24155 -17.48932 -17.27818 -16.68190 -16.37392 -15.98866 -15.55966 -15.31889 -14.97997 -14.87795 -14.74036 -14.48452 -14.16092 -13.82645 -13.67583 -13.38570 -13.16055 -12.99265 -12.89354 -12.57264 -12.43867 -12.17464 -12.00806 -11.82441 -11.66662 -11.41593 -11.35543 -11.06966 -10.69497 -10.59200 -10.42095 -10.29353 -10.07725 -10.03139 -9.97475 -9.55393 -9.28628 -9.24709 -8.79139 -8.20475 -7.45145 -6.35597 -3.86514 2.78456 2.85095 3.02194 3.05818 3.14113 3.65992 3.91846 4.04777 4.07618 4.52565 4.64419 4.68299 4.82236 4.89541 4.98913 4.99297 5.08699 5.13741 5.15869 5.18661 5.41164 5.43700 5.49212 5.57935 5.65832 5.75269 5.83329 5.86285 5.92107 5.96061 6.00975 6.09990 6.20292 6.35497 6.53300 6.55497 6.72476 6.83242 7.29934 7.43910 7.53149 7.59980 7.68460 8.11089 8.41331 8.53885 8.90256 9.38404 9.76774 10.77251 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.013699 B = 0.003432 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.447766 B = 8157.012303 C = 9147.002642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.365 6.365 3 C 0.044 3.956 4 C 0.522 3.478 5 O -0.523 6.523 6 N -0.695 5.695 7 C 0.196 3.804 8 C 0.063 3.937 9 O -0.570 6.570 10 C -0.118 4.118 11 C -0.112 4.112 12 C 0.037 3.963 13 N -0.505 5.505 14 C 0.040 3.960 15 C 0.417 3.583 16 O -0.577 6.577 17 N -0.583 5.583 18 C -0.307 4.307 19 H 0.119 0.881 20 C 0.043 3.957 21 N -0.879 5.879 22 Si 0.879 3.121 23 H -0.270 1.270 24 H -0.276 1.276 25 H -0.268 1.268 26 C 0.024 3.976 27 H 0.041 0.959 28 H 0.042 0.958 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.396 0.604 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.375 0.625 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.371 0.629 45 H 0.274 0.726 46 H 0.092 0.908 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.578 8.655 10.181 24.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.036 4.036 4 C 0.307 3.693 5 O -0.398 6.398 6 N -0.348 5.348 7 C 0.110 3.890 8 C -0.016 4.016 9 O -0.374 6.374 10 C -0.156 4.156 11 C -0.149 4.149 12 C -0.091 4.091 13 N -0.227 5.227 14 C -0.092 4.092 15 C 0.203 3.797 16 O -0.462 6.462 17 N -0.221 5.221 18 C -0.436 4.436 19 H 0.137 0.863 20 C -0.161 4.161 21 N -0.519 5.519 22 Si 0.706 3.294 23 H -0.196 1.196 24 H -0.201 1.201 25 H -0.193 1.193 26 C -0.105 4.105 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.108 0.892 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.230 0.770 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.221 0.779 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.204 0.796 45 H 0.085 0.915 46 H 0.110 0.890 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -20.175 8.308 10.228 24.097 hybrid contribution 0.029 -0.427 -0.952 1.044 sum -20.146 7.880 9.276 23.537 Atomic orbital electron populations 1.22812 0.80758 1.03145 0.99922 1.88033 1.19441 1.25412 1.95371 1.22249 0.92483 0.86737 1.02156 1.19968 0.88136 0.84761 0.76477 1.90665 1.74194 1.26715 1.48250 1.45570 1.06391 1.08300 1.74506 1.20363 0.79465 0.95984 0.93171 1.22584 0.96430 0.97115 0.85506 1.86389 1.76141 1.57458 1.17426 1.21799 1.01617 0.94132 0.98086 1.21552 1.00904 0.98213 0.94277 1.22282 0.99776 0.89375 0.97693 1.62336 1.56504 1.02609 1.01284 1.22072 0.92965 0.99623 0.94514 1.21064 0.90069 0.83916 0.84659 1.90410 1.65356 1.56270 1.34196 1.42413 1.09811 1.49336 1.20552 1.19447 0.82305 1.32971 1.08866 0.86349 1.25072 0.95754 0.97210 0.98057 1.69622 1.09350 1.39280 1.33598 0.86668 0.80181 0.79575 0.83019 1.19577 1.20100 1.19328 1.22776 1.02663 0.97375 0.87657 0.94035 0.93902 0.89249 0.90666 0.90548 0.76988 0.91295 0.92782 0.77852 0.90940 0.90275 0.91984 0.91488 0.91711 0.91278 0.89214 0.89302 0.79585 0.91550 0.89000 0.89408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.36 -4.58 10.24 -55.14 -0.56 -5.14 16 3 C 0.04 0.45 6.42 36.00 0.23 0.68 16 4 C 0.52 7.18 7.32 -10.99 -0.08 7.10 16 5 O -0.52 -9.43 12.80 -14.35 -0.18 -9.61 16 6 N -0.70 -8.33 4.47 -47.53 -0.21 -8.54 16 7 C 0.20 2.70 0.45 -131.74 -0.06 2.64 16 8 C 0.06 0.85 5.59 37.16 0.21 1.06 16 9 O -0.57 -6.60 13.02 -35.23 -0.46 -7.06 16 10 C -0.12 -1.45 4.72 -26.61 -0.13 -1.58 16 11 C -0.11 -1.30 5.91 -26.65 -0.16 -1.45 16 12 C 0.04 0.55 5.09 -3.83 -0.02 0.53 16 13 N -0.50 -8.07 4.71 -236.12 -1.11 -9.18 16 14 C 0.04 0.69 5.86 -4.98 -0.03 0.66 16 15 C 0.42 9.25 7.20 -10.99 -0.08 9.17 16 16 O -0.58 -14.43 11.20 5.55 0.06 -14.37 16 17 N -0.58 -13.86 5.09 -10.96 -0.06 -13.92 16 18 C -0.31 -8.64 10.16 -14.93 -0.15 -8.79 16 19 H 0.12 3.80 7.39 -52.48 -0.39 3.41 16 20 C 0.04 1.17 5.50 -17.47 -0.10 1.07 16 21 N -0.88 -25.68 13.96 55.50 0.77 -24.90 16 22 Si 0.88 19.51 27.74 -169.99 -4.71 14.80 16 23 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 24 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.27 -5.48 6.52 56.52 0.37 -5.12 16 26 C 0.02 0.41 3.57 -3.84 -0.01 0.39 16 27 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.40 3.73 7.39 -40.82 -0.30 3.43 16 33 H 0.07 1.08 6.32 -51.93 -0.33 0.75 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.38 2.89 9.12 45.56 0.42 3.30 16 36 H 0.07 0.80 7.91 -51.93 -0.41 0.39 16 37 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.06 0.63 6.99 -51.93 -0.36 0.27 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.90 8.06 -51.92 -0.42 0.49 16 41 H 0.07 1.28 6.00 -51.93 -0.31 0.97 16 42 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 43 H 0.09 1.33 8.06 -51.93 -0.42 0.91 16 44 H 0.37 7.86 5.76 -40.82 -0.24 7.63 16 45 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.09 1.88 5.36 -51.93 -0.28 1.60 16 47 H 0.09 1.70 6.18 -51.93 -0.32 1.38 16 LS Contribution 368.88 15.07 5.56 5.56 Total: -1.00 -35.25 368.88 -6.50 -41.75 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: -6.33 Total: 17.78 kcal Atomic # 6 Polarization: 12.11 SS G_CDS: 0.74 Total: 12.84 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: -0.61 Total: -56.55 kcal Atomic # 8 Polarization: -35.04 SS G_CDS: -1.14 Total: -36.19 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -4.71 Total: 14.80 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.25 -6.50 -41.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699996980.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.179 kcal (2) G-P(sol) polarization free energy of solvation -35.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds