Wall clock time and date at job start Tue Mar 31 2020 04:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 114.00009 * 2 1 4 4 C 1.50696 * 109.46915 * 180.02562 * 3 2 1 5 5 O 1.21284 * 120.00691 * 359.97438 * 4 3 2 6 6 N 1.34776 * 119.99902 * 180.02562 * 4 3 2 7 7 C 1.46505 * 120.00278 * 174.75127 * 6 4 3 8 8 C 1.52997 * 109.50091 * 302.90842 * 7 6 4 9 9 O 1.42907 * 109.47328 * 305.44672 * 8 7 6 10 10 C 1.53118 * 109.50400 * 182.82947 * 7 6 4 11 11 C 1.53117 * 109.16239 * 297.71430 * 10 7 6 12 12 C 1.53034 * 109.27454 * 302.34423 * 11 10 7 13 13 N 1.46850 * 109.52514 * 59.18050 * 12 11 10 14 14 C 1.46903 * 110.99938 * 174.15789 * 13 12 11 15 15 C 1.50697 * 109.47034 * 66.05163 * 14 13 12 16 16 O 1.21293 * 120.00236 * 359.97438 * 15 14 13 17 17 N 1.34776 * 120.00107 * 180.02562 * 15 14 13 18 18 C 1.37097 * 120.00259 * 179.97438 * 17 15 14 19 19 H 1.08003 * 120.00167 * 0.02562 * 18 17 15 20 20 C 1.38954 * 120.00097 * 179.97438 * 18 17 15 21 21 N 1.31405 * 119.99952 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99739 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.46873 * 90.00571 * 22 20 18 24 24 H 1.48505 * 109.46818 * 209.99877 * 22 20 18 25 25 H 1.48493 * 109.47289 * 329.99909 * 22 20 18 26 26 C 1.46848 * 111.19643 * 298.25563 * 13 12 11 27 27 H 1.08995 * 109.47237 * 300.00020 * 1 2 3 28 28 H 1.09001 * 109.47513 * 60.00313 * 1 2 3 29 29 H 1.08997 * 109.47080 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46957 * 59.99804 * 3 2 1 31 31 H 1.09000 * 109.46516 * 299.99778 * 3 2 1 32 32 H 0.97000 * 120.00133 * 354.74387 * 6 4 3 33 33 H 1.08998 * 109.47313 * 65.44497 * 8 7 6 34 34 H 1.09000 * 109.47262 * 185.45002 * 8 7 6 35 35 H 0.96693 * 114.00110 * 179.97438 * 9 8 7 36 36 H 1.09006 * 109.52081 * 57.61507 * 10 7 6 37 37 H 1.09002 * 109.52453 * 177.74324 * 10 7 6 38 38 H 1.09000 * 109.50479 * 62.28674 * 11 10 7 39 39 H 1.09003 * 109.50495 * 182.40365 * 11 10 7 40 40 H 1.09007 * 109.46216 * 179.19732 * 12 11 10 41 41 H 1.08998 * 109.46769 * 299.16566 * 12 11 10 42 42 H 1.09000 * 109.46742 * 186.04663 * 14 13 12 43 43 H 1.08993 * 109.47289 * 306.04363 * 14 13 12 44 44 H 0.97005 * 119.99652 * 359.97438 * 17 15 14 45 45 H 0.97002 * 120.00020 * 179.97438 * 21 20 18 46 46 H 1.09000 * 109.46366 * 301.72623 * 26 13 12 47 47 H 1.08998 * 109.45963 * 181.75384 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 -0.0006 5 8 4.0341 0.0915 -0.0006 6 7 4.2764 2.2968 -0.0002 7 6 5.7326 2.1841 0.1152 8 6 6.0862 1.4266 1.3966 9 8 5.4660 2.0656 2.5143 10 6 6.3516 3.5838 0.1614 11 6 6.0428 4.3133 -1.1489 12 6 6.5854 3.4949 -2.3227 13 7 5.9623 2.1652 -2.3234 14 6 6.3545 1.4006 -3.5149 15 6 7.8310 1.1046 -3.4582 16 8 8.4917 1.4927 -2.5180 17 7 8.4177 0.4094 -4.4527 18 6 9.7610 0.1405 -4.4014 19 1 10.3492 0.4853 -3.5638 20 6 10.3657 -0.5767 -5.4265 21 7 11.6532 -0.8349 -5.3770 22 14 9.3483 -1.1738 -6.8748 23 1 9.3446 -0.1370 -7.9380 24 1 9.9364 -2.4284 -7.4091 25 1 7.9554 -1.4307 -6.4289 26 6 6.2841 1.4274 -1.0952 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.8622 3.1706 -0.0765 33 1 5.7297 0.3993 1.3216 34 1 7.1678 1.4269 1.5322 35 1 5.6471 1.6377 3.3623 36 1 5.9290 4.1416 0.9971 37 1 7.4311 3.5007 0.2875 38 1 4.9644 4.4307 -1.2547 39 1 6.5171 5.2947 -1.1395 40 1 6.3546 4.0046 -3.2583 41 1 7.6657 3.3896 -2.2236 42 1 5.7971 0.4644 -3.5456 43 1 6.1349 1.9836 -4.4093 44 1 7.8893 0.0993 -5.2049 45 1 12.0752 -1.3359 -6.0924 46 1 7.3658 1.3318 -1.0018 47 1 5.8344 0.4354 -1.1391 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699996980.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:15 Heat of formation + Delta-G solvation = -175.666129 kcal Electronic energy + Delta-G solvation = -30261.999510 eV Core-core repulsion = 26058.386931 eV Total energy + Delta-G solvation = -4203.612579 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.81158 -40.57972 -39.24574 -38.08239 -37.49220 -36.12330 -35.26745 -33.84273 -33.44811 -32.02419 -29.34214 -29.10774 -26.84510 -26.64298 -26.42167 -24.11881 -22.83298 -21.81460 -21.33793 -20.47079 -19.98365 -18.46712 -18.34250 -17.81822 -17.43935 -17.13138 -17.03314 -16.50674 -16.41112 -16.10240 -15.89406 -15.71616 -15.55235 -15.23435 -14.97395 -14.82368 -14.56282 -14.27007 -14.06121 -13.91044 -13.61519 -13.36817 -13.30631 -13.05797 -12.95913 -12.62871 -12.50211 -12.45028 -12.27559 -12.04780 -11.82852 -11.51202 -11.45381 -11.41493 -11.11347 -11.02932 -10.68287 -10.36953 -10.25439 -9.88533 -9.02160 -8.45955 -6.05929 1.27686 1.30980 1.40721 1.77206 1.86786 1.96472 2.18924 2.78854 2.93076 3.11229 3.21648 3.39657 3.64399 3.80306 3.95045 4.06454 4.17905 4.24722 4.26064 4.33808 4.36987 4.48409 4.50850 4.55279 4.56953 4.59628 4.62523 4.67350 4.82357 4.89812 4.90646 5.02153 5.07195 5.10391 5.21529 5.41793 5.48940 5.62873 5.87154 5.97687 6.10792 6.14686 6.53525 6.76056 6.77801 6.83787 7.34519 7.44076 7.89831 8.71581 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.013699 B = 0.003432 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.447766 B = 8157.012303 C = 9147.002642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.407 6.407 3 C 0.048 3.952 4 C 0.513 3.487 5 O -0.574 6.574 6 N -0.680 5.680 7 C 0.199 3.801 8 C 0.071 3.929 9 O -0.567 6.567 10 C -0.112 4.112 11 C -0.103 4.103 12 C 0.034 3.966 13 N -0.489 5.489 14 C 0.046 3.954 15 C 0.418 3.582 16 O -0.608 6.608 17 N -0.589 5.589 18 C -0.327 4.327 19 H 0.056 0.944 20 C -0.014 4.014 21 N -0.933 5.933 22 Si 0.963 3.037 23 H -0.254 1.254 24 H -0.275 1.275 25 H -0.236 1.236 26 C 0.034 3.966 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.413 0.587 33 H 0.044 0.956 34 H 0.047 0.953 35 H 0.393 0.607 36 H 0.095 0.905 37 H 0.057 0.943 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.026 0.974 42 H 0.102 0.898 43 H 0.126 0.874 44 H 0.388 0.612 45 H 0.279 0.721 46 H 0.050 0.950 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.934 10.461 9.185 28.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.326 6.326 3 C -0.031 4.031 4 C 0.300 3.700 5 O -0.453 6.453 6 N -0.334 5.334 7 C 0.112 3.888 8 C -0.009 4.009 9 O -0.374 6.374 10 C -0.150 4.150 11 C -0.141 4.141 12 C -0.094 4.094 13 N -0.211 5.211 14 C -0.086 4.086 15 C 0.206 3.794 16 O -0.494 6.494 17 N -0.230 5.230 18 C -0.457 4.457 19 H 0.074 0.926 20 C -0.213 4.213 21 N -0.573 5.573 22 Si 0.783 3.217 23 H -0.178 1.178 24 H -0.200 1.200 25 H -0.160 1.160 26 C -0.096 4.096 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.109 0.891 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.251 0.749 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.242 0.758 36 H 0.113 0.887 37 H 0.076 0.924 38 H 0.108 0.892 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.044 0.956 42 H 0.120 0.880 43 H 0.144 0.856 44 H 0.224 0.776 45 H 0.089 0.911 46 H 0.068 0.932 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -24.578 10.172 9.269 28.169 hybrid contribution 1.415 -0.937 -0.454 1.757 sum -23.163 9.235 8.815 26.449 Atomic orbital electron populations 1.23003 0.78536 1.03926 1.01562 1.87976 1.21955 1.26940 1.95759 1.22331 0.89395 0.86540 1.04817 1.20764 0.89926 0.84117 0.75203 1.90656 1.75416 1.28700 1.50532 1.45396 1.05275 1.09000 1.73683 1.20140 0.80807 0.96363 0.91461 1.22333 0.96017 0.95989 0.86555 1.86328 1.75820 1.57342 1.17865 1.21752 1.00344 0.93314 0.99606 1.21554 1.02571 0.98105 0.91854 1.22370 0.97347 0.89261 1.00401 1.62445 1.55463 1.02791 1.00365 1.22245 0.88520 1.01189 0.96597 1.22270 0.92215 0.81715 0.83212 1.90437 1.66996 1.56711 1.35303 1.42271 1.08243 1.50552 1.21901 1.19012 0.84223 1.34514 1.07921 0.92603 1.26106 0.97086 0.96604 1.01471 1.69797 1.11846 1.40432 1.35264 0.85393 0.79429 0.78967 0.77947 1.17786 1.19986 1.15970 1.22526 0.99888 0.97214 0.89925 0.92239 0.92295 0.89088 0.87734 0.87728 0.74942 0.93789 0.93472 0.75761 0.88669 0.92392 0.89216 0.89509 0.89836 0.95555 0.87974 0.85639 0.77648 0.91114 0.93196 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.41 -9.46 10.24 -129.94 -1.33 -10.79 16 3 C 0.05 0.85 6.42 71.23 0.46 1.30 16 4 C 0.51 13.32 7.32 87.66 0.64 13.96 16 5 O -0.57 -20.98 12.80 15.99 0.20 -20.78 16 6 N -0.68 -14.75 4.47 -422.69 -1.89 -16.64 16 7 C 0.20 5.39 0.45 3.65 0.00 5.39 16 8 C 0.07 1.97 5.59 71.98 0.40 2.37 16 9 O -0.57 -12.40 13.02 -148.98 -1.94 -14.34 16 10 C -0.11 -2.59 4.72 30.67 0.14 -2.44 16 11 C -0.10 -2.09 5.91 30.64 0.18 -1.91 16 12 C 0.03 0.97 5.09 86.32 0.44 1.41 16 13 N -0.49 -15.08 4.71 -900.93 -4.24 -19.32 16 14 C 0.05 1.53 5.86 85.56 0.50 2.03 16 15 C 0.42 19.03 7.20 87.66 0.63 19.66 16 16 O -0.61 -32.43 11.20 -3.07 -0.03 -32.47 16 17 N -0.59 -28.41 5.09 -306.98 -1.56 -29.97 16 18 C -0.33 -19.41 10.16 84.04 0.85 -18.56 16 19 H 0.06 3.92 7.39 -2.91 -0.02 3.90 16 20 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 21 N -0.93 -56.94 13.96 21.66 0.30 -56.64 16 22 Si 0.96 39.85 27.74 68.60 1.90 41.75 16 23 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 24 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 25 H -0.24 -8.48 6.52 99.48 0.65 -7.83 16 26 C 0.03 1.19 3.57 86.32 0.31 1.50 16 27 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.41 6.08 7.39 -92.71 -0.69 5.40 16 33 H 0.04 1.46 6.32 -2.39 -0.02 1.44 16 34 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.39 5.56 9.12 -74.06 -0.68 4.89 16 36 H 0.09 1.81 7.91 -2.38 -0.02 1.79 16 37 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.09 1.38 6.99 -2.39 -0.02 1.36 16 39 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.08 2.08 8.06 -2.38 -0.02 2.06 16 41 H 0.03 1.00 6.00 -2.39 -0.01 0.98 16 42 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 43 H 0.13 3.30 8.06 -2.39 -0.02 3.28 16 44 H 0.39 15.83 5.76 -92.70 -0.53 15.29 16 45 H 0.28 15.59 8.31 -92.71 -0.77 14.82 16 46 H 0.05 2.20 5.36 -2.39 -0.01 2.19 16 47 H 0.06 2.53 6.18 -2.39 -0.01 2.52 16 Total: -1.00 -85.53 368.88 -3.24 -88.77 By element: Atomic # 1 Polarization: 45.37 SS G_CDS: -0.93 Total: 44.44 kcal Atomic # 6 Polarization: 19.71 SS G_CDS: 6.28 Total: 25.99 kcal Atomic # 7 Polarization: -115.18 SS G_CDS: -7.39 Total: -122.57 kcal Atomic # 8 Polarization: -75.28 SS G_CDS: -3.10 Total: -78.38 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 1.90 Total: 41.75 kcal Total: -85.53 -3.24 -88.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699996980.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.893 kcal (2) G-P(sol) polarization free energy of solvation -85.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds