Wall clock time and date at job start Tue Mar 31 2020 04:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42894 * 114.00213 * 2 1 4 4 C 1.50695 * 109.47348 * 180.02562 * 3 2 1 5 5 O 1.21281 * 119.99783 * 359.97438 * 4 3 2 6 6 N 1.34778 * 120.00327 * 179.97438 * 4 3 2 7 7 C 1.46496 * 119.99966 * 185.10201 * 6 4 3 8 8 C 1.53003 * 109.53710 * 57.63799 * 7 6 4 9 9 O 1.42898 * 109.46912 * 54.68383 * 8 7 6 10 10 C 1.53125 * 109.50369 * 177.73563 * 7 6 4 11 11 C 1.53124 * 109.21112 * 62.31919 * 10 7 6 12 12 C 1.53030 * 109.27820 * 57.62631 * 11 10 7 13 13 N 1.46856 * 109.52391 * 300.81625 * 12 11 10 14 14 C 1.46897 * 110.99961 * 185.83812 * 13 12 11 15 15 C 1.50699 * 109.47683 * 293.95591 * 14 13 12 16 16 O 1.21292 * 119.99297 * 0.02562 * 15 14 13 17 17 N 1.34774 * 120.00232 * 179.97438 * 15 14 13 18 18 C 1.37098 * 120.00028 * 180.02562 * 17 15 14 19 19 H 1.08007 * 119.99775 * 0.02562 * 18 17 15 20 20 C 1.38944 * 119.99823 * 180.02562 * 18 17 15 21 21 N 1.31410 * 120.00232 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99857 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46767 * 60.00227 * 22 20 18 24 24 H 1.48502 * 109.47171 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47083 * 300.00238 * 22 20 18 26 26 C 1.46847 * 111.19329 * 61.74418 * 13 12 11 27 27 H 1.09001 * 109.47312 * 59.99355 * 1 2 3 28 28 H 1.08998 * 109.47753 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47121 * 299.99962 * 1 2 3 30 30 H 1.09005 * 109.47343 * 59.99942 * 3 2 1 31 31 H 1.09006 * 109.47256 * 300.00194 * 3 2 1 32 32 H 0.96997 * 119.99701 * 5.10468 * 6 4 3 33 33 H 1.09000 * 109.47426 * 174.68311 * 8 7 6 34 34 H 1.09001 * 109.46731 * 294.68768 * 8 7 6 35 35 H 0.96698 * 114.00258 * 179.97438 * 9 8 7 36 36 H 1.08998 * 109.51841 * 302.38256 * 10 7 6 37 37 H 1.09001 * 109.52305 * 182.25671 * 10 7 6 38 38 H 1.09000 * 109.50149 * 177.56292 * 11 10 7 39 39 H 1.09004 * 109.50090 * 297.64171 * 11 10 7 40 40 H 1.09001 * 109.46726 * 60.83122 * 12 11 10 41 41 H 1.09003 * 109.46500 * 180.80572 * 12 11 10 42 42 H 1.09004 * 109.47166 * 53.96139 * 14 13 12 43 43 H 1.09010 * 109.46701 * 173.95432 * 14 13 12 44 44 H 0.97003 * 119.99732 * 0.02562 * 17 15 14 45 45 H 0.97004 * 120.00137 * 180.02562 * 21 20 18 46 46 H 1.08999 * 109.46501 * 58.27701 * 26 13 12 47 47 H 1.09003 * 109.46140 * 178.24183 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 8 4.0341 0.0914 -0.0006 6 7 4.2765 2.2967 -0.0013 7 6 5.7327 2.1838 -0.1147 8 6 6.0893 1.4368 -1.4016 9 8 5.4748 2.0873 -2.5157 10 6 6.3530 3.5834 -0.1474 11 6 6.0436 4.3025 1.1686 12 6 6.5830 3.4735 2.3363 13 7 5.9576 2.1448 2.3251 14 6 6.3469 1.3698 3.5107 15 6 7.8230 1.0717 3.4538 16 8 8.4857 1.4666 2.5178 17 7 8.4070 0.3674 4.4434 18 6 9.7500 0.0967 4.3918 19 1 10.3401 0.4483 3.5583 20 6 10.3518 -0.6299 5.4118 21 7 9.6337 -1.0582 6.4256 22 14 12.1816 -0.9994 5.3412 23 1 12.9431 0.2752 5.3111 24 1 12.5749 -1.7834 6.5394 25 1 12.4813 -1.7840 4.1165 26 6 6.2800 1.4167 1.0913 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.6887 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8622 3.1705 0.0734 33 1 7.1713 1.4356 -1.5331 34 1 5.7299 0.4098 -1.3369 35 1 5.6586 1.6671 -3.3669 36 1 5.9326 4.1487 -0.9791 37 1 7.4327 3.5005 -0.2721 38 1 6.5195 5.2831 1.1680 39 1 4.9651 4.4214 1.2734 40 1 7.6633 3.3672 2.2379 41 1 6.3517 3.9758 3.2757 42 1 6.1269 1.9457 4.4096 43 1 5.7879 0.4342 3.5328 44 1 7.8770 0.0519 5.1921 45 1 10.0540 -1.5651 7.1378 46 1 7.3617 1.3201 0.9987 47 1 5.8287 0.4251 1.1263 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699996981.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:21 Heat of formation + Delta-G solvation = -149.920320 kcal Electronic energy + Delta-G solvation = -30208.438001 eV Core-core repulsion = 26005.941844 eV Total energy + Delta-G solvation = -4202.496157 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -40.55420 -38.98828 -37.99556 -36.97778 -36.31716 -34.41875 -33.68009 -32.27705 -31.27537 -30.88786 -28.48619 -27.36996 -25.92030 -25.64835 -24.65753 -22.80651 -21.64840 -20.71248 -19.30980 -18.97819 -17.87028 -17.44251 -17.25373 -16.64437 -16.33463 -15.98119 -15.45703 -15.27526 -14.90808 -14.70558 -14.65988 -14.37248 -14.07749 -13.87995 -13.72580 -13.44553 -13.10701 -12.97873 -12.83177 -12.48975 -12.34194 -11.94417 -11.77396 -11.63741 -11.58467 -11.32570 -11.20835 -10.97167 -10.60100 -10.46788 -10.37132 -10.25767 -10.23109 -10.04474 -9.93659 -9.48269 -9.20928 -9.16590 -8.74542 -7.98907 -7.34464 -6.44295 -3.85785 2.82910 2.89161 3.16930 3.23646 3.27695 3.84033 3.96557 4.09296 4.15721 4.58781 4.69695 4.85003 4.92266 5.02220 5.03196 5.04110 5.12354 5.18481 5.21920 5.22882 5.44747 5.46892 5.55564 5.60568 5.70063 5.86109 5.88463 5.96973 6.04492 6.07889 6.16343 6.20925 6.28297 6.42196 6.60810 6.62411 6.78233 6.88022 7.41046 7.51521 7.52988 7.62418 7.72666 8.01842 8.45722 8.56922 9.13593 9.50499 10.00944 10.72144 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.014603 B = 0.003208 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.982076 B = 8725.412912 C = 9479.968562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.365 6.365 3 C 0.044 3.956 4 C 0.522 3.478 5 O -0.522 6.522 6 N -0.695 5.695 7 C 0.196 3.804 8 C 0.063 3.937 9 O -0.569 6.569 10 C -0.118 4.118 11 C -0.112 4.112 12 C 0.038 3.962 13 N -0.505 5.505 14 C 0.043 3.957 15 C 0.408 3.592 16 O -0.595 6.595 17 N -0.555 5.555 18 C -0.303 4.303 19 H 0.102 0.898 20 C 0.024 3.976 21 N -0.898 5.898 22 Si 0.930 3.070 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.273 1.273 26 C 0.025 3.975 27 H 0.041 0.959 28 H 0.089 0.911 29 H 0.042 0.958 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.396 0.604 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.375 0.625 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.393 0.607 45 H 0.273 0.727 46 H 0.092 0.908 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.681 8.922 -12.339 21.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.282 6.282 3 C -0.036 4.036 4 C 0.307 3.693 5 O -0.398 6.398 6 N -0.348 5.348 7 C 0.110 3.890 8 C -0.016 4.016 9 O -0.374 6.374 10 C -0.156 4.156 11 C -0.150 4.150 12 C -0.090 4.090 13 N -0.228 5.228 14 C -0.089 4.089 15 C 0.194 3.806 16 O -0.483 6.483 17 N -0.190 5.190 18 C -0.433 4.433 19 H 0.120 0.880 20 C -0.178 4.178 21 N -0.539 5.539 22 Si 0.757 3.243 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.199 1.199 26 C -0.104 4.104 27 H 0.059 0.941 28 H 0.107 0.893 29 H 0.061 0.939 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.230 0.770 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.221 0.779 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.226 0.774 45 H 0.083 0.917 46 H 0.109 0.891 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.423 8.553 -12.288 21.495 hybrid contribution 1.223 -0.266 0.228 1.273 sum -14.200 8.287 -12.060 20.390 Atomic orbital electron populations 1.22814 0.80772 1.03139 0.99909 1.88033 1.19429 1.25414 1.95366 1.22248 0.92494 0.86733 1.02139 1.19965 0.88134 0.84764 0.76487 1.90665 1.74195 1.26706 1.48221 1.45562 1.06380 1.08278 1.74542 1.20376 0.79472 0.95983 0.93179 1.22582 0.96421 0.96996 0.85590 1.86393 1.76331 1.57384 1.17296 1.21790 1.01517 0.94214 0.98046 1.21554 1.00911 0.98159 0.94331 1.22261 0.99715 0.89481 0.97573 1.62332 1.56501 1.02577 1.01363 1.22020 0.93293 0.99334 0.94222 1.21103 0.90106 0.84430 0.85006 1.90364 1.65355 1.57519 1.35054 1.42053 1.09584 1.46704 1.20694 1.19658 0.84200 1.31945 1.07450 0.88038 1.25285 1.00488 0.96760 0.95259 1.69605 1.36824 1.37174 1.10278 0.85928 0.82086 0.78603 0.77659 1.19917 1.20905 1.19874 1.22759 1.02615 0.97389 0.87610 0.94061 0.89250 0.93893 0.90518 0.90717 0.77017 0.92854 0.91349 0.77905 0.91021 0.90379 0.91601 0.92003 0.91357 0.91805 0.89466 0.89355 0.77363 0.91709 0.89072 0.89445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.36 -4.73 10.24 -55.14 -0.56 -5.29 16 3 C 0.04 0.47 6.42 36.00 0.23 0.70 16 4 C 0.52 7.42 7.32 -10.99 -0.08 7.34 16 5 O -0.52 -9.69 12.80 -14.35 -0.18 -9.87 16 6 N -0.70 -8.64 4.47 -47.53 -0.21 -8.85 16 7 C 0.20 2.77 0.45 -131.73 -0.06 2.71 16 8 C 0.06 0.87 5.60 37.16 0.21 1.08 16 9 O -0.57 -6.70 13.02 -35.23 -0.46 -7.16 16 10 C -0.12 -1.48 4.71 -26.60 -0.13 -1.61 16 11 C -0.11 -1.35 5.91 -26.65 -0.16 -1.51 16 12 C 0.04 0.59 5.09 -3.83 -0.02 0.57 16 13 N -0.51 -8.49 4.71 -236.10 -1.11 -9.60 16 14 C 0.04 0.80 5.86 -4.98 -0.03 0.77 16 15 C 0.41 9.45 7.20 -10.99 -0.08 9.37 16 16 O -0.60 -15.10 11.20 5.55 0.06 -15.03 16 17 N -0.56 -14.08 5.29 -10.96 -0.06 -14.14 16 18 C -0.30 -8.41 9.68 -14.94 -0.14 -8.56 16 19 H 0.10 2.94 7.16 -52.48 -0.38 2.57 16 20 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 21 N -0.90 -24.56 13.05 55.50 0.72 -23.83 16 22 Si 0.93 21.11 29.55 -169.99 -5.02 16.08 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 C 0.02 0.44 3.56 -3.83 -0.01 0.43 16 27 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.40 3.90 7.41 -40.82 -0.30 3.60 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.07 1.08 6.35 -51.93 -0.33 0.76 16 35 H 0.37 2.92 9.12 45.56 0.42 3.34 16 36 H 0.07 0.81 7.91 -51.93 -0.41 0.40 16 37 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.66 7.01 -51.93 -0.36 0.30 16 40 H 0.07 1.31 6.00 -51.93 -0.31 0.99 16 41 H 0.06 0.95 8.06 -51.93 -0.42 0.53 16 42 H 0.09 1.45 8.06 -51.93 -0.42 1.03 16 43 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 44 H 0.39 9.66 7.90 -40.82 -0.32 9.34 16 45 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 46 H 0.09 1.91 5.36 -51.93 -0.28 1.63 16 47 H 0.09 1.76 6.14 -51.93 -0.32 1.44 16 LS Contribution 372.03 15.07 5.61 5.61 Total: -1.00 -34.01 372.03 -6.85 -40.86 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: -6.38 Total: 18.00 kcal Atomic # 6 Polarization: 12.47 SS G_CDS: 0.75 Total: 13.21 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: -0.66 Total: -56.42 kcal Atomic # 8 Polarization: -36.21 SS G_CDS: -1.14 Total: -37.35 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.01 -6.85 -40.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699996981.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.057 kcal (2) G-P(sol) polarization free energy of solvation -34.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds