Wall clock time and date at job start Tue Mar 31 2020 05:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86798 * 119.99974 * 2 1 4 4 H 1.48500 * 109.47522 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47230 * 300.00071 * 3 2 1 6 6 H 1.48502 * 109.47052 * 59.99787 * 3 2 1 7 7 C 1.38949 * 119.99925 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99655 * 180.02562 * 7 2 1 9 9 N 1.37096 * 120.00131 * 359.97438 * 7 2 1 10 10 C 1.34775 * 119.99721 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00295 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99905 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.47159 * 179.97438 * 12 10 9 14 14 C 1.46903 * 110.99778 * 179.97438 * 13 12 10 15 15 C 1.52994 * 109.46876 * 174.68397 * 14 13 12 16 16 H 1.09002 * 109.58818 * 58.96949 * 15 14 13 17 17 C 1.53194 * 109.58929 * 298.67980 * 15 14 13 18 18 C 1.53353 * 109.15060 * 185.56368 * 17 15 14 19 19 C 1.53029 * 109.60534 * 61.29117 * 18 17 15 20 20 C 1.53191 * 109.31505 * 298.62315 * 19 18 17 21 21 N 1.46924 * 109.58638 * 179.25051 * 15 14 13 22 22 C 1.34779 * 120.63162 * 353.56186 * 21 15 14 23 23 O 1.21277 * 119.99868 * 5.12528 * 22 21 15 24 24 C 1.50700 * 120.00076 * 185.13133 * 22 21 15 25 25 C 1.53003 * 109.46894 * 179.97438 * 24 22 21 26 26 C 1.52997 * 109.46940 * 179.97438 * 25 24 22 27 27 F 1.39900 * 109.47464 * 180.02562 * 26 25 24 28 28 H 0.97003 * 120.00277 * 0.02562 * 1 2 3 29 29 H 0.97000 * 119.99849 * 0.02562 * 9 7 2 30 30 H 1.09006 * 109.46812 * 59.99870 * 12 10 9 31 31 H 1.08993 * 109.47082 * 300.00003 * 12 10 9 32 32 H 1.00904 * 110.99569 * 56.05300 * 13 12 10 33 33 H 1.08997 * 109.46556 * 54.68533 * 14 13 12 34 34 H 1.08997 * 109.47349 * 294.68296 * 14 13 12 35 35 H 1.08999 * 109.49764 * 305.39272 * 17 15 14 36 36 H 1.09007 * 109.49596 * 65.48454 * 17 15 14 37 37 H 1.08999 * 109.43001 * 301.24104 * 18 17 15 38 38 H 1.08998 * 109.40614 * 181.32333 * 18 17 15 39 39 H 1.09008 * 109.49880 * 178.67272 * 19 18 17 40 40 H 1.08999 * 109.52607 * 58.59627 * 19 18 17 41 41 H 1.08993 * 109.59027 * 294.84842 * 20 19 18 42 42 H 1.09007 * 109.58832 * 174.42070 * 20 19 18 43 43 H 1.09004 * 109.46638 * 299.99441 * 24 22 21 44 44 H 1.08996 * 109.47448 * 59.99303 * 24 22 21 45 45 H 1.09001 * 109.46852 * 299.99714 * 25 24 22 46 46 H 1.08991 * 109.47250 * 59.99863 * 25 24 22 47 47 H 1.09001 * 109.47298 * 299.99665 * 26 25 24 48 48 H 1.09001 * 109.47588 * 59.99827 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0010 12 6 1.2438 -4.8629 0.0000 13 7 2.1985 -5.9795 -0.0007 14 6 1.4982 -7.2708 0.0005 15 6 2.5175 -8.4038 -0.1340 16 1 3.2259 -8.3580 0.6931 17 6 3.2685 -8.2641 -1.4619 18 6 4.1863 -9.4780 -1.6508 19 6 3.3448 -10.7552 -1.7008 20 6 2.5942 -10.9196 -0.3755 21 7 1.8213 -9.6975 -0.1151 22 6 0.4986 -9.7620 0.1359 23 8 -0.1460 -8.7419 0.2568 24 6 -0.1791 -11.1016 0.2665 25 6 -1.6684 -10.8942 0.5493 26 6 -2.3566 -12.2543 0.6813 27 9 -3.7185 -12.0648 0.9393 28 1 -0.4851 0.8401 -0.0004 29 1 0.3534 -2.3906 -0.0005 30 1 0.6168 -4.9208 -0.8897 31 1 0.6176 -4.9205 0.8902 32 1 2.8339 -5.9124 0.7803 33 1 0.8019 -7.3072 -0.8373 34 1 0.9487 -7.3854 0.9348 35 1 2.5520 -8.2190 -2.2821 36 1 3.8647 -7.3516 -1.4484 37 1 4.8863 -9.5366 -0.8174 38 1 4.7404 -9.3715 -2.5834 39 1 3.9966 -11.6145 -1.8587 40 1 2.6278 -10.6873 -2.5190 41 1 3.3089 -11.0790 0.4319 42 1 1.9183 -11.7723 -0.4416 43 1 -0.0596 -11.6611 -0.6613 44 1 0.2722 -11.6587 1.0874 45 1 -1.7875 -10.3348 1.4772 46 1 -2.1200 -10.3370 -0.2713 47 1 -2.2376 -12.8133 -0.2469 48 1 -1.9052 -12.8120 1.5018 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731548439.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:56 Heat of formation + Delta-G solvation = -123.686166 kcal Electronic energy + Delta-G solvation = -28394.099024 eV Core-core repulsion = 24205.113256 eV Total energy + Delta-G solvation = -4188.985769 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.190 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -47.92948 -40.83312 -38.18766 -37.70713 -35.55960 -34.36097 -33.74691 -33.06456 -31.58143 -31.08035 -28.09873 -27.35150 -25.37941 -24.57449 -23.57406 -22.65918 -21.49346 -20.96469 -19.40518 -18.95460 -17.81228 -17.28815 -16.91395 -16.47577 -15.94417 -15.78859 -15.74933 -15.26454 -15.06033 -14.70857 -14.55361 -14.35676 -14.19433 -14.04168 -13.77231 -13.52161 -13.33741 -13.07035 -12.94227 -12.46378 -12.26289 -12.11899 -11.96159 -11.72841 -11.47416 -11.45787 -11.39207 -11.17600 -11.10624 -11.04501 -10.96424 -10.85826 -10.65755 -10.30144 -10.16504 -9.51891 -9.45437 -8.80287 -8.33101 -7.90429 -7.76679 -6.35322 -3.75985 2.38670 2.64009 3.20490 3.30337 3.37842 3.95236 4.00038 4.19923 4.27898 4.33788 4.38967 4.54006 4.58317 4.60876 4.65685 4.76633 4.78436 4.87780 4.98953 5.06793 5.12610 5.25002 5.27897 5.29630 5.34026 5.39520 5.50168 5.55437 5.66871 5.69844 5.84908 5.88833 5.95265 5.97175 6.07528 6.13492 6.22474 6.33527 6.38550 6.54448 7.13360 7.38720 7.61157 7.80157 8.00284 8.13662 8.68775 9.24493 9.62302 10.13983 10.82678 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.013328 B = 0.002369 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.387138 B =11817.422690 C =13727.563135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.020 3.980 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.297 4.297 8 H 0.103 0.897 9 N -0.566 5.566 10 C 0.443 3.557 11 O -0.585 6.585 12 C 0.058 3.942 13 N -0.676 5.676 14 C 0.070 3.930 15 C 0.150 3.850 16 H 0.070 0.930 17 C -0.122 4.122 18 C -0.123 4.123 19 C -0.136 4.136 20 C 0.108 3.892 21 N -0.609 5.609 22 C 0.510 3.490 23 O -0.525 6.525 24 C -0.139 4.139 25 C -0.140 4.140 26 C 0.063 3.937 27 F -0.217 7.217 28 H 0.270 0.730 29 H 0.392 0.608 30 H 0.084 0.916 31 H 0.042 0.958 32 H 0.343 0.657 33 H 0.081 0.919 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.093 0.907 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.073 0.927 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.752 -29.536 -0.627 29.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.181 4.181 3 Si 0.756 3.244 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.203 5.203 10 C 0.229 3.771 11 O -0.469 6.469 12 C -0.075 4.075 13 N -0.309 5.309 14 C -0.059 4.059 15 C 0.048 3.952 16 H 0.088 0.912 17 C -0.160 4.160 18 C -0.161 4.161 19 C -0.174 4.174 20 C -0.015 4.015 21 N -0.344 5.344 22 C 0.298 3.702 23 O -0.401 6.401 24 C -0.179 4.179 25 C -0.178 4.178 26 C 0.008 3.992 27 F -0.199 7.199 28 H 0.080 0.920 29 H 0.226 0.774 30 H 0.102 0.898 31 H 0.060 0.940 32 H 0.161 0.839 33 H 0.099 0.901 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.112 0.888 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.102 0.898 43 H 0.113 0.887 44 H 0.113 0.887 45 H 0.102 0.898 46 H 0.102 0.898 47 H 0.092 0.908 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.135 -28.818 -1.234 28.867 hybrid contribution -0.513 0.718 0.841 1.219 sum 0.622 -28.100 -0.393 28.109 Atomic orbital electron populations 1.69628 1.05926 1.27961 1.50869 1.25265 0.95633 0.99699 0.97508 0.85804 0.79677 0.81219 0.77653 1.19254 1.20782 1.20821 1.19747 0.93359 0.82271 1.47306 0.87915 1.41881 1.09239 1.04619 1.64520 1.19880 0.88368 0.84785 0.84103 1.90503 1.13794 1.87170 1.55434 1.21559 0.94200 0.90530 1.01233 1.60070 1.19313 1.00660 1.50894 1.22518 0.93559 0.86971 1.02849 1.21288 0.94022 0.81660 0.98278 0.91153 1.21943 0.98774 0.98770 0.96513 1.21621 0.97918 0.94342 1.02191 1.21926 0.99399 0.98846 0.97210 1.21759 0.95505 0.86527 0.97695 1.48220 1.07871 1.07853 1.70457 1.20578 0.81716 0.91402 0.76489 1.90804 1.64103 1.35447 1.49756 1.21614 0.96088 0.96148 1.04048 1.21932 0.93692 0.96998 1.05215 1.21988 0.76774 0.98111 1.02369 1.92784 1.34547 1.96649 1.95883 0.91979 0.77439 0.89782 0.93958 0.83875 0.90050 0.93005 0.91799 0.88832 0.91855 0.91598 0.90827 0.91478 0.91203 0.89818 0.88708 0.88711 0.89818 0.89790 0.90825 0.90824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.37 13.05 55.50 0.72 -24.64 16 2 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 3 Si 0.93 21.59 29.55 -169.99 -5.02 16.56 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.30 -8.55 9.68 -14.93 -0.14 -8.70 16 8 H 0.10 3.09 7.16 -52.48 -0.38 2.71 16 9 N -0.57 -15.01 5.29 -10.96 -0.06 -15.07 16 10 C 0.44 10.99 7.82 -10.98 -0.09 10.90 16 11 O -0.58 -16.33 15.78 5.54 0.09 -16.25 16 12 C 0.06 1.12 6.16 -4.97 -0.03 1.09 16 13 N -0.68 -11.77 5.51 -115.06 -0.63 -12.40 16 14 C 0.07 1.03 3.52 -3.83 -0.01 1.02 16 15 C 0.15 1.74 3.16 -67.60 -0.21 1.53 16 16 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 17 C -0.12 -1.36 5.18 -26.45 -0.14 -1.50 16 18 C -0.12 -0.99 5.89 -26.53 -0.16 -1.15 16 19 C -0.14 -0.81 6.08 -26.62 -0.16 -0.97 16 20 C 0.11 0.61 6.33 -3.71 -0.02 0.59 16 21 N -0.61 -5.61 2.97 -165.22 -0.49 -6.10 16 22 C 0.51 5.19 7.61 -10.98 -0.08 5.11 16 23 O -0.53 -7.48 11.39 5.56 0.06 -7.42 16 24 C -0.14 -0.81 4.10 -27.88 -0.11 -0.93 16 25 C -0.14 -1.04 4.96 -26.73 -0.13 -1.17 16 26 C 0.06 0.36 7.55 37.16 0.28 0.64 16 27 F -0.22 -2.10 17.36 2.25 0.04 -2.06 16 28 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.39 10.04 7.90 -40.82 -0.32 9.72 16 30 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 31 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.34 6.05 8.49 -39.29 -0.33 5.72 16 33 H 0.08 1.34 7.07 -51.93 -0.37 0.97 16 34 H 0.05 0.84 6.39 -51.93 -0.33 0.51 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.09 1.24 7.82 -51.93 -0.41 0.84 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.31 8.14 -51.92 -0.42 -0.11 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.08 0.27 5.96 -51.93 -0.31 -0.04 16 43 H 0.09 0.36 7.48 -51.93 -0.39 -0.03 16 44 H 0.09 0.36 8.11 -51.93 -0.42 -0.06 16 45 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 46 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 47 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 48 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 386.19 15.07 5.82 5.82 Total: -1.00 -34.24 386.19 -8.47 -42.70 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -7.88 Total: 11.92 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: -1.11 Total: 6.93 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: -0.46 Total: -58.21 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: 0.15 Total: -23.66 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.06 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.24 -8.47 -42.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731548439.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.984 kcal (2) G-P(sol) polarization free energy of solvation -34.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds