Wall clock time and date at job start Tue Mar 31 2020 05:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86799 * 119.99948 * 2 1 4 4 H 1.48495 * 109.47281 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47164 * 299.99987 * 3 2 1 6 6 H 1.48507 * 109.47007 * 60.00118 * 3 2 1 7 7 C 1.38951 * 120.00049 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99899 * 179.97438 * 7 2 1 9 9 N 1.37093 * 120.00072 * 359.97438 * 7 2 1 10 10 C 1.34778 * 120.00457 * 180.02562 * 9 7 2 11 11 O 1.21300 * 119.99295 * 0.02562 * 10 9 7 12 12 C 1.50692 * 120.00496 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.47382 * 179.97438 * 12 10 9 14 14 C 1.46901 * 111.00440 * 180.02562 * 13 12 10 15 15 C 1.52990 * 109.47262 * 180.02562 * 14 13 12 16 16 H 1.09000 * 109.52985 * 54.92036 * 15 14 13 17 17 C 1.53046 * 109.50018 * 174.99940 * 15 14 13 18 18 C 1.53040 * 109.54022 * 181.31781 * 17 15 14 19 19 C 1.53193 * 109.30943 * 298.62950 * 18 17 15 20 20 N 1.46920 * 108.77389 * 54.63814 * 19 18 17 21 21 C 1.34780 * 120.63110 * 126.36407 * 20 19 18 22 22 O 1.21280 * 120.00423 * 179.97438 * 21 20 19 23 23 C 1.50701 * 119.99795 * 0.02562 * 21 20 19 24 24 C 1.52997 * 109.47212 * 179.97438 * 23 21 20 25 25 C 1.52992 * 109.47482 * 179.97438 * 24 23 21 26 26 F 1.39906 * 109.47544 * 179.97438 * 25 24 23 27 27 C 1.46928 * 118.74133 * 306.64033 * 20 19 18 28 28 H 0.96995 * 120.00490 * 0.02562 * 1 2 3 29 29 H 0.97009 * 120.00342 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.47382 * 60.00323 * 12 10 9 31 31 H 1.08996 * 109.47519 * 299.99995 * 12 10 9 32 32 H 1.00900 * 111.00065 * 56.04473 * 13 12 10 33 33 H 1.08991 * 109.47046 * 59.99539 * 14 13 12 34 34 H 1.09004 * 109.46385 * 300.00018 * 14 13 12 35 35 H 1.08998 * 109.46057 * 61.29269 * 17 15 14 36 36 H 1.09007 * 109.45420 * 301.33707 * 17 15 14 37 37 H 1.09007 * 109.49325 * 178.68049 * 18 17 15 38 38 H 1.08998 * 109.49837 * 58.58618 * 18 17 15 39 39 H 1.08998 * 109.58758 * 294.85382 * 19 18 17 40 40 H 1.09001 * 109.58370 * 174.42328 * 19 18 17 41 41 H 1.09002 * 109.47060 * 299.99722 * 23 21 20 42 42 H 1.09001 * 109.47380 * 59.99809 * 23 21 20 43 43 H 1.09002 * 109.47153 * 299.99998 * 24 23 21 44 44 H 1.08998 * 109.47533 * 59.99628 * 24 23 21 45 45 H 1.09002 * 109.47103 * 300.00247 * 25 24 23 46 46 H 1.09001 * 109.47066 * 60.00169 * 25 24 23 47 47 H 1.09003 * 109.58862 * 173.14114 * 27 20 19 48 48 H 1.08997 * 109.58643 * 293.57176 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.7080 1.3464 0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8893 2.3964 1.2126 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2102 -3.5578 -0.0001 12 6 1.2438 -4.8629 -0.0011 13 7 2.1984 -5.9795 -0.0016 14 6 1.4981 -7.2709 -0.0028 15 6 2.5230 -8.4067 -0.0027 16 1 3.2048 -8.2822 0.8386 17 6 1.7981 -9.7489 0.1219 18 6 2.8243 -10.8837 0.1552 19 6 3.6215 -10.8844 -1.1530 20 7 4.2035 -9.5503 -1.3528 21 6 5.5258 -9.4032 -1.5683 22 8 5.9941 -8.2965 -1.7323 23 6 6.4222 -10.6139 -1.6067 24 6 7.8642 -10.1729 -1.8655 25 6 8.7745 -11.4020 -1.9039 26 9 10.0930 -10.9987 -2.1411 27 6 3.3177 -8.3790 -1.3070 28 1 -0.4850 0.8400 -0.0004 29 1 0.3533 -2.3907 -0.0005 30 1 0.6175 -4.9205 -0.8914 31 1 0.6168 -4.9209 0.8886 32 1 2.8332 -5.9128 0.7798 33 1 0.8735 -7.3446 -0.8930 34 1 0.8730 -7.3459 0.8870 35 1 1.1348 -9.8840 -0.7325 36 1 1.2128 -9.7614 1.0414 37 1 2.3085 -11.8374 0.2674 38 1 3.5033 -10.7358 0.9949 39 1 2.9584 -11.1221 -1.9849 40 1 4.4184 -11.6258 -1.0949 41 1 6.3677 -11.1369 -0.6519 42 1 6.0979 -11.2810 -2.4054 43 1 7.9185 -9.6502 -2.8205 44 1 8.1889 -9.5056 -1.0672 45 1 8.7201 -11.9243 -0.9487 46 1 8.4500 -12.0696 -2.7021 47 1 3.9142 -7.4677 -1.3504 48 1 2.6293 -8.4082 -2.1517 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752804182.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:43 Heat of formation + Delta-G solvation = -141.936052 kcal Electronic energy + Delta-G solvation = -27848.859661 eV Core-core repulsion = 23659.082518 eV Total energy + Delta-G solvation = -4189.777143 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.190 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -47.89902 -40.46831 -38.42172 -37.88485 -35.58262 -34.38719 -33.86366 -32.97565 -31.54823 -31.11765 -28.23410 -27.13668 -25.32695 -24.98164 -23.56607 -22.41013 -21.91403 -20.58752 -19.16721 -19.11144 -17.84884 -17.41814 -16.87089 -16.44537 -16.10900 -15.85715 -15.62859 -15.35219 -15.01397 -14.87599 -14.64491 -14.47681 -14.14612 -14.00184 -13.70814 -13.60134 -13.37275 -13.06807 -12.75147 -12.62283 -12.48677 -12.09968 -11.87859 -11.83391 -11.50097 -11.46485 -11.41388 -11.35623 -11.08991 -11.00866 -10.99131 -10.83161 -10.63015 -10.30828 -10.18518 -9.88162 -9.48158 -8.80052 -8.41577 -8.01743 -7.91818 -6.38287 -3.78685 2.48894 2.77133 3.19401 3.29705 3.37827 3.95110 4.02967 4.08981 4.27731 4.31853 4.37730 4.46580 4.54349 4.60414 4.68410 4.72440 4.82531 4.85610 4.97830 5.03647 5.11215 5.18771 5.28083 5.30125 5.34300 5.37950 5.45356 5.57334 5.58351 5.60219 5.65837 5.76339 5.80087 5.88459 5.90611 6.00722 6.15363 6.21739 6.30756 6.38098 7.23578 7.24068 7.59258 7.67831 8.05661 8.10733 8.65497 9.22131 9.58424 10.10342 10.79665 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.013155 B = 0.002164 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.988637 B =12936.590574 C =14872.794334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.297 4.297 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.440 3.560 11 O -0.580 6.580 12 C 0.052 3.948 13 N -0.669 5.669 14 C 0.066 3.934 15 C -0.097 4.097 16 H 0.073 0.927 17 C -0.115 4.115 18 C -0.134 4.134 19 C 0.105 3.895 20 N -0.615 5.615 21 C 0.510 3.490 22 O -0.527 6.527 23 C -0.137 4.137 24 C -0.141 4.141 25 C 0.063 3.937 26 F -0.218 7.218 27 C 0.122 3.878 28 H 0.270 0.730 29 H 0.392 0.608 30 H 0.085 0.915 31 H 0.042 0.958 32 H 0.350 0.650 33 H 0.072 0.928 34 H 0.030 0.970 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.074 0.926 46 H 0.073 0.927 47 H 0.110 0.890 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.472 -29.478 -1.025 29.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.181 4.181 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.426 4.426 8 H 0.121 0.879 9 N -0.202 5.202 10 C 0.226 3.774 11 O -0.464 6.464 12 C -0.081 4.081 13 N -0.301 5.301 14 C -0.064 4.064 15 C -0.117 4.117 16 H 0.092 0.908 17 C -0.153 4.153 18 C -0.173 4.173 19 C -0.018 4.018 20 N -0.350 5.350 21 C 0.298 3.702 22 O -0.402 6.402 23 C -0.177 4.177 24 C -0.180 4.180 25 C 0.008 3.992 26 F -0.199 7.199 27 C 0.000 4.000 28 H 0.080 0.920 29 H 0.225 0.775 30 H 0.104 0.896 31 H 0.060 0.940 32 H 0.169 0.831 33 H 0.091 0.909 34 H 0.048 0.952 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.102 0.898 44 H 0.102 0.898 45 H 0.092 0.908 46 H 0.092 0.908 47 H 0.128 0.872 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.549 -28.680 -1.813 29.095 hybrid contribution -0.809 0.756 0.964 1.468 sum 3.740 -27.924 -0.849 28.186 Atomic orbital electron populations 1.69616 1.05924 1.27983 1.50957 1.25259 0.95646 0.99716 0.97450 0.85800 0.79768 0.81141 0.77654 1.19194 1.20753 1.20814 1.19762 0.93414 0.82233 1.47227 0.87875 1.41870 1.09163 1.04614 1.64597 1.19836 0.88427 0.84747 0.84406 1.90548 1.13721 1.87033 1.55061 1.21657 0.94318 0.91022 1.01110 1.60061 1.18773 0.99872 1.51427 1.21955 0.95072 0.88783 1.00619 1.21418 0.97267 0.94097 0.98915 0.90819 1.21559 0.97587 0.93758 1.02434 1.21908 0.98447 0.99240 0.97658 1.21752 0.98005 0.84180 0.97840 1.48194 1.07273 1.07862 1.71625 1.20559 0.82184 0.90918 0.76584 1.90792 1.74088 1.26954 1.48405 1.21568 0.94773 0.97205 1.04145 1.21942 0.92777 0.97825 1.05425 1.21989 0.77526 0.97153 1.02533 1.92783 1.38335 1.92520 1.96244 1.21564 0.92851 0.89275 0.96302 0.91988 0.77508 0.89639 0.93958 0.83108 0.90908 0.95166 0.91509 0.91533 0.90642 0.91433 0.91238 0.89911 0.88696 0.88719 0.89788 0.89753 0.90810 0.90829 0.87182 0.91748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.97 13.05 55.50 0.72 -24.25 16 2 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 3 Si 0.93 21.55 29.55 -169.99 -5.02 16.53 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.30 -8.48 9.68 -14.93 -0.14 -8.63 16 8 H 0.10 3.11 7.16 -52.48 -0.38 2.74 16 9 N -0.57 -14.67 5.29 -10.96 -0.06 -14.73 16 10 C 0.44 10.70 7.82 -10.99 -0.09 10.61 16 11 O -0.58 -16.36 15.78 5.54 0.09 -16.27 16 12 C 0.05 0.92 6.17 -4.98 -0.03 0.89 16 13 N -0.67 -10.92 5.69 -115.07 -0.65 -11.57 16 14 C 0.07 0.77 5.08 -3.83 -0.02 0.75 16 15 C -0.10 -0.99 2.47 -90.72 -0.22 -1.22 16 16 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 17 C -0.12 -0.82 5.17 -26.69 -0.14 -0.96 16 18 C -0.13 -0.74 6.08 -26.61 -0.16 -0.90 16 19 C 0.11 0.60 6.34 -3.71 -0.02 0.58 16 20 N -0.62 -6.07 2.98 -173.03 -0.52 -6.58 16 21 C 0.51 5.86 7.70 -10.98 -0.08 5.78 16 22 O -0.53 -8.87 15.40 5.56 0.09 -8.78 16 23 C -0.14 -0.91 4.05 -27.88 -0.11 -1.02 16 24 C -0.14 -1.16 4.96 -26.74 -0.13 -1.29 16 25 C 0.06 0.39 7.55 37.15 0.28 0.67 16 26 F -0.22 -2.18 17.36 2.25 0.04 -2.14 16 27 C 0.12 1.46 5.51 -3.93 -0.02 1.44 16 28 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.39 9.66 7.90 -40.82 -0.32 9.34 16 30 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.35 6.05 8.43 -39.29 -0.33 5.72 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 0.28 5.93 -51.93 -0.31 -0.02 16 41 H 0.09 0.41 7.69 -51.93 -0.40 0.02 16 42 H 0.09 0.40 7.94 -51.93 -0.41 -0.02 16 43 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 44 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 45 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.11 1.80 6.78 -51.93 -0.35 1.45 16 48 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 392.67 15.07 5.92 5.92 Total: -1.00 -35.60 392.67 -8.37 -43.96 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -7.97 Total: 10.75 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: -0.99 Total: 7.17 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: -0.50 Total: -57.14 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: 0.17 Total: -25.05 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.04 Total: -2.14 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.60 -8.37 -43.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752804182.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.974 kcal (2) G-P(sol) polarization free energy of solvation -35.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds