Wall clock time and date at job start Tue Mar 31 2020 05:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86802 * 119.99733 * 2 1 4 4 H 1.48510 * 109.46932 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47399 * 300.00025 * 3 2 1 6 6 H 1.48498 * 109.47424 * 60.00723 * 3 2 1 7 7 C 1.38947 * 120.00099 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00248 * 180.02562 * 7 2 1 9 9 N 1.37098 * 120.00064 * 359.97438 * 7 2 1 10 10 C 1.34773 * 120.00155 * 180.02562 * 9 7 2 11 11 O 1.21287 * 120.00089 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00121 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47340 * 179.97438 * 12 10 9 14 14 C 1.46900 * 110.99999 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.47132 * 179.97438 * 14 13 12 16 16 H 1.09005 * 109.49903 * 304.93358 * 15 14 13 17 17 C 1.53038 * 109.52594 * 184.85411 * 15 14 13 18 18 C 1.53040 * 109.53948 * 178.66760 * 17 15 14 19 19 C 1.52767 * 109.38405 * 61.23711 * 18 17 15 20 20 N 1.46923 * 109.00740 * 305.58916 * 19 18 17 21 21 C 1.34774 * 120.63150 * 233.58251 * 20 19 18 22 22 O 1.21279 * 120.00472 * 179.72111 * 21 20 19 23 23 C 1.50706 * 120.00020 * 359.72421 * 21 20 19 24 24 C 1.52997 * 109.47238 * 180.02562 * 23 21 20 25 25 C 1.52996 * 109.46947 * 179.97438 * 24 23 21 26 26 F 1.39903 * 109.47077 * 179.97438 * 25 24 23 27 27 C 1.46923 * 118.74019 * 53.31208 * 20 19 18 28 28 H 0.97000 * 119.99781 * 359.97438 * 1 2 3 29 29 H 0.97000 * 119.99499 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.47288 * 59.98895 * 12 10 9 31 31 H 1.09007 * 109.46917 * 299.99333 * 12 10 9 32 32 H 1.00901 * 111.00381 * 56.03627 * 13 12 10 33 33 H 1.08994 * 109.47230 * 59.99460 * 14 13 12 34 34 H 1.08997 * 109.46827 * 299.99342 * 14 13 12 35 35 H 1.09003 * 109.45879 * 298.68643 * 17 15 14 36 36 H 1.08997 * 109.46099 * 58.64354 * 17 15 14 37 37 H 1.08998 * 109.50295 * 181.31405 * 18 17 15 38 38 H 1.09007 * 109.49833 * 301.38178 * 18 17 15 39 39 H 1.08997 * 109.50865 * 185.70825 * 19 18 17 40 40 H 1.08992 * 109.43028 * 65.42659 * 19 18 17 41 41 H 1.09001 * 109.46953 * 299.99667 * 23 21 20 42 42 H 1.09000 * 109.47318 * 59.99264 * 23 21 20 43 43 H 1.09001 * 109.46832 * 299.99686 * 24 23 21 44 44 H 1.09004 * 109.47261 * 59.99705 * 24 23 21 45 45 H 1.08992 * 109.47554 * 299.99696 * 25 24 23 46 46 H 1.08996 * 109.47261 * 60.00229 * 25 24 23 47 47 H 1.08995 * 109.59333 * 66.42320 * 27 20 19 48 48 H 1.09000 * 109.58899 * 186.85869 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7082 1.3464 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8895 2.3965 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0010 12 6 1.2438 -4.8629 -0.0011 13 7 2.1984 -5.9795 -0.0016 14 6 1.4981 -7.2708 -0.0016 15 6 2.5229 -8.4068 -0.0028 16 1 3.2029 -8.2825 -0.8456 17 6 1.7984 -9.7492 -0.1248 18 6 2.8250 -10.8837 -0.1594 19 6 3.6260 -10.8825 1.1415 20 7 4.2070 -9.5484 1.3445 21 6 5.5296 -9.4005 1.5571 22 8 5.9979 -8.2935 1.7183 23 6 6.4268 -10.6109 1.5944 24 6 7.8691 -10.1689 1.8497 25 6 8.7798 -11.3977 1.8882 26 9 10.0987 -10.9936 2.1211 27 6 3.3197 -8.3781 1.3055 28 1 -0.4850 0.8401 0.0004 29 1 0.3534 -2.3906 -0.0005 30 1 0.6173 -4.9204 -0.8913 31 1 0.6169 -4.9209 0.8887 32 1 2.8334 -5.9127 0.7797 33 1 0.8728 -7.3450 -0.8913 34 1 0.8736 -7.3453 0.8886 35 1 1.1370 -9.8840 0.7311 36 1 1.2111 -9.7628 -1.0429 37 1 2.3095 -11.8377 -0.2698 38 1 3.5018 -10.7363 -1.0011 39 1 4.4236 -11.6227 1.0784 40 1 2.9655 -11.1241 1.9741 41 1 6.1045 -11.2775 2.3943 42 1 6.3703 -11.1346 0.6401 43 1 8.1917 -9.5021 1.0501 44 1 7.9252 -9.6455 2.8042 45 1 8.4571 -12.0642 2.6880 46 1 8.7238 -11.9215 0.9340 47 1 2.6336 -8.4111 2.1517 48 1 3.9152 -7.4663 1.3506 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752804183.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:49 Heat of formation + Delta-G solvation = -141.543424 kcal Electronic energy + Delta-G solvation = -27863.927593 eV Core-core repulsion = 23674.167475 eV Total energy + Delta-G solvation = -4189.760118 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.190 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -47.91558 -40.55074 -38.45470 -37.91184 -35.61774 -34.42014 -33.86678 -33.02311 -31.57185 -31.11261 -28.27560 -27.14265 -25.38780 -25.07031 -23.62740 -22.45647 -21.87265 -20.51137 -19.25147 -19.14726 -17.86012 -17.49549 -16.89477 -16.55295 -16.14920 -15.83643 -15.66980 -15.32808 -15.10342 -14.81373 -14.73762 -14.47729 -14.18273 -13.98240 -13.72707 -13.62583 -13.26686 -13.13609 -13.08640 -12.81867 -12.40106 -12.10454 -11.89585 -11.66511 -11.57708 -11.48994 -11.42626 -11.37279 -11.07779 -11.03000 -10.99488 -10.87338 -10.66385 -10.30692 -10.18456 -9.95802 -9.48148 -8.87327 -8.41896 -8.02702 -7.91820 -6.38188 -3.78605 2.42053 2.68393 3.19523 3.29800 3.37932 3.95138 3.98807 4.08420 4.26554 4.29610 4.35580 4.44426 4.52603 4.57261 4.64492 4.71394 4.80013 4.82116 4.95702 4.98769 5.09101 5.15381 5.21856 5.28724 5.31290 5.38110 5.44710 5.47494 5.51165 5.57366 5.67972 5.74768 5.78680 5.85054 5.88150 5.99235 6.01826 6.17839 6.28728 6.31951 7.14738 7.24182 7.59399 7.67559 7.97839 8.10837 8.65583 9.22186 9.58472 10.10366 10.79741 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.013164 B = 0.002165 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.529211 B =12928.049219 C =14867.256923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.297 4.297 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.440 3.560 11 O -0.580 6.580 12 C 0.051 3.949 13 N -0.671 5.671 14 C 0.067 3.933 15 C -0.099 4.099 16 H 0.086 0.914 17 C -0.114 4.114 18 C -0.135 4.135 19 C 0.106 3.894 20 N -0.613 5.613 21 C 0.511 3.489 22 O -0.528 6.528 23 C -0.136 4.136 24 C -0.142 4.142 25 C 0.063 3.937 26 F -0.217 7.217 27 C 0.111 3.889 28 H 0.270 0.730 29 H 0.392 0.608 30 H 0.086 0.914 31 H 0.043 0.957 32 H 0.349 0.651 33 H 0.075 0.925 34 H 0.028 0.972 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.064 0.936 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.506 -29.638 2.731 29.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.181 4.181 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.426 4.426 8 H 0.121 0.879 9 N -0.202 5.202 10 C 0.226 3.774 11 O -0.464 6.464 12 C -0.082 4.082 13 N -0.304 5.304 14 C -0.064 4.064 15 C -0.119 4.119 16 H 0.104 0.896 17 C -0.152 4.152 18 C -0.173 4.173 19 C -0.017 4.017 20 N -0.347 5.347 21 C 0.299 3.701 22 O -0.403 6.403 23 C -0.176 4.176 24 C -0.180 4.180 25 C 0.008 3.992 26 F -0.199 7.199 27 C -0.011 4.011 28 H 0.080 0.920 29 H 0.225 0.775 30 H 0.104 0.896 31 H 0.061 0.939 32 H 0.170 0.830 33 H 0.093 0.907 34 H 0.046 0.954 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.103 0.897 44 H 0.102 0.898 45 H 0.092 0.908 46 H 0.092 0.908 47 H 0.082 0.918 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.586 -28.842 2.159 29.284 hybrid contribution -0.794 0.779 0.837 1.392 sum 3.792 -28.064 2.996 28.477 Atomic orbital electron populations 1.69623 1.05921 1.27975 1.50955 1.25261 0.95650 0.99716 0.97445 0.85800 0.79769 0.81132 0.77654 1.19190 1.20769 1.20792 1.19764 0.93421 0.82230 1.47227 0.87869 1.41867 1.09166 1.04603 1.64585 1.19834 0.88427 0.84753 0.84422 1.90544 1.13735 1.87029 1.55064 1.21671 0.94339 0.91035 1.01149 1.60104 1.18823 0.99934 1.51514 1.21951 0.95036 0.88759 1.00619 1.21531 0.97538 0.94127 0.98680 0.89558 1.21541 0.97542 0.93637 1.02516 1.21843 0.98480 0.99323 0.97691 1.21678 0.98068 0.83943 0.98009 1.48094 1.07108 1.07746 1.71723 1.20589 0.82122 0.90993 0.76429 1.90786 1.74100 1.26940 1.48522 1.21566 0.94734 0.97091 1.04252 1.21947 0.92737 0.97875 1.05428 1.21984 0.77511 0.97111 1.02589 1.92783 1.38273 1.92490 1.96316 1.21743 0.92830 0.89589 0.96947 0.91990 0.77496 0.89598 0.93914 0.83038 0.90674 0.95419 0.91719 0.91227 0.90543 0.91282 0.89787 0.91263 0.88668 0.88572 0.89696 0.89815 0.90819 0.90780 0.91781 0.88146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.00 13.05 55.50 0.72 -24.27 16 2 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 3 Si 0.93 21.57 29.55 -169.99 -5.02 16.55 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.30 -8.51 9.68 -14.93 -0.14 -8.65 16 8 H 0.10 3.12 7.16 -52.49 -0.38 2.75 16 9 N -0.57 -14.72 5.29 -10.97 -0.06 -14.78 16 10 C 0.44 10.78 7.82 -10.99 -0.09 10.69 16 11 O -0.58 -16.48 15.78 5.55 0.09 -16.40 16 12 C 0.05 0.92 6.17 -4.98 -0.03 0.89 16 13 N -0.67 -11.21 6.12 -115.06 -0.70 -11.92 16 14 C 0.07 0.79 5.15 -3.82 -0.02 0.77 16 15 C -0.10 -1.02 2.55 -90.50 -0.23 -1.25 16 16 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 17 C -0.11 -0.81 5.17 -26.69 -0.14 -0.95 16 18 C -0.14 -0.74 6.06 -26.83 -0.16 -0.90 16 19 C 0.11 0.58 6.31 -3.93 -0.02 0.55 16 20 N -0.61 -5.79 2.98 -173.03 -0.52 -6.30 16 21 C 0.51 5.67 7.70 -10.98 -0.08 5.59 16 22 O -0.53 -8.60 15.39 5.56 0.09 -8.51 16 23 C -0.14 -0.86 4.05 -27.88 -0.11 -0.98 16 24 C -0.14 -1.13 4.96 -26.73 -0.13 -1.26 16 25 C 0.06 0.38 7.55 37.16 0.28 0.66 16 26 F -0.22 -2.14 17.36 2.25 0.04 -2.11 16 27 C 0.11 1.25 5.35 -3.71 -0.02 1.23 16 28 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.39 9.69 7.90 -40.82 -0.32 9.37 16 30 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.35 6.23 6.82 -39.29 -0.27 5.96 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 39 H 0.08 0.27 5.93 -51.93 -0.31 -0.04 16 40 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.10 0.37 7.95 -51.93 -0.41 -0.05 16 42 H 0.10 0.40 7.68 -51.93 -0.40 0.00 16 43 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 44 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 45 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 46 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 48 H 0.10 1.49 5.81 -51.93 -0.30 1.19 16 LS Contribution 390.47 15.07 5.88 5.88 Total: -1.00 -35.83 390.47 -8.34 -44.17 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -7.86 Total: 10.82 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -1.00 Total: 6.86 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: -0.55 Total: -57.28 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: 0.17 Total: -24.91 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.04 Total: -2.11 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.83 -8.34 -44.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752804183.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.369 kcal (2) G-P(sol) polarization free energy of solvation -35.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds