Wall clock time and date at job start Tue Mar 31 2020 05:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47096 * 2 1 4 4 H 1.09006 * 109.46625 * 55.00385 * 3 2 1 5 5 F 1.39895 * 109.47540 * 295.00340 * 3 2 1 6 6 C 1.50703 * 109.47048 * 174.99528 * 3 2 1 7 7 O 1.21277 * 119.99370 * 43.91334 * 6 3 2 8 8 N 1.34769 * 120.00276 * 223.90979 * 6 3 2 9 9 C 1.46928 * 120.63009 * 354.47737 * 8 6 3 10 10 C 1.53198 * 108.77463 * 233.62947 * 9 8 6 11 11 C 1.53038 * 109.31412 * 305.36632 * 10 9 8 12 12 C 1.53039 * 109.53651 * 61.36614 * 11 10 9 13 13 H 1.09004 * 109.49760 * 58.61967 * 12 11 10 14 14 C 1.53000 * 109.49808 * 178.67884 * 12 11 10 15 15 N 1.46893 * 109.47304 * 184.99650 * 14 12 11 16 16 C 1.46903 * 111.00127 * 180.02562 * 15 14 12 17 17 C 1.50699 * 109.47241 * 180.02562 * 16 15 14 18 18 O 1.21293 * 119.99917 * 359.97438 * 17 16 15 19 19 N 1.34773 * 119.99821 * 179.97438 * 17 16 15 20 20 C 1.37097 * 120.00049 * 179.97438 * 19 17 16 21 21 H 1.08004 * 119.99897 * 0.02562 * 20 19 17 22 22 C 1.38951 * 120.00472 * 179.97438 * 20 19 17 23 23 N 1.31412 * 119.99563 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00241 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47340 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47177 * 120.00469 * 24 22 20 27 27 H 1.48500 * 109.47390 * 240.00080 * 24 22 20 28 28 C 1.46926 * 120.63004 * 174.50638 * 8 6 3 29 29 H 1.09001 * 109.47453 * 299.99760 * 1 2 3 30 30 H 1.09009 * 109.47210 * 59.99640 * 1 2 3 31 31 H 1.09000 * 109.47360 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46572 * 240.00071 * 2 1 3 33 33 H 1.09000 * 109.47045 * 120.00487 * 2 1 3 34 34 H 1.09004 * 109.58457 * 113.84847 * 9 8 6 35 35 H 1.08995 * 109.58886 * 353.42087 * 9 8 6 36 36 H 1.09004 * 109.49525 * 65.32163 * 10 9 8 37 37 H 1.09002 * 109.49196 * 185.40990 * 10 9 8 38 38 H 1.08998 * 109.45726 * 181.38488 * 11 10 9 39 39 H 1.09000 * 109.45821 * 301.35843 * 11 10 9 40 40 H 1.09002 * 109.47544 * 305.00529 * 14 12 11 41 41 H 1.09010 * 109.46706 * 64.99990 * 14 12 11 42 42 H 1.00897 * 111.00562 * 303.96107 * 15 14 12 43 43 H 1.09008 * 109.47074 * 300.00256 * 16 15 14 44 44 H 1.08997 * 109.46913 * 60.00150 * 16 15 14 45 45 H 0.97002 * 120.00257 * 359.97438 * 19 17 16 46 46 H 0.97004 * 119.99810 * 179.97438 * 23 22 20 47 47 H 1.08991 * 109.58883 * 6.57617 * 28 8 6 48 48 H 1.09005 * 109.70085 * 246.22612 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9814 0.8419 5 9 1.6699 2.0680 -1.1953 6 6 3.5419 1.4443 0.1240 7 8 4.2051 0.6674 -0.5299 8 7 4.1480 2.3091 0.9613 9 6 3.3705 3.3358 1.6685 10 6 3.9986 4.7059 1.3943 11 6 5.4809 4.6681 1.7730 12 6 6.2019 3.6258 0.9150 13 1 6.0825 3.8767 -0.1390 14 6 7.6897 3.6119 1.2713 15 7 8.4013 2.6990 0.3668 16 6 9.8359 2.6595 0.6803 17 6 10.5312 1.7152 -0.2663 18 8 9.8942 1.1321 -1.1180 19 7 11.8608 1.5187 -0.1665 20 6 12.4932 0.6593 -1.0273 21 1 11.9260 0.1401 -1.7857 22 6 13.8641 0.4571 -0.9248 23 7 14.5543 1.0892 -0.0023 24 14 14.7257 -0.7144 -2.0972 25 1 13.7319 -1.2961 -3.0350 26 1 15.7579 0.0256 -2.8668 27 1 15.3724 -1.8037 -1.3223 28 6 5.5988 2.2435 1.1837 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.3875 3.1338 2.7395 35 1 2.3415 3.3270 1.3092 36 1 3.8995 4.9463 0.3358 37 1 3.4903 5.4647 1.9893 38 1 5.9245 5.6489 1.6020 39 1 5.5801 4.4031 2.8256 40 1 8.0977 4.6174 1.1675 41 1 7.8138 3.2739 2.3002 42 1 7.9993 1.7740 0.3969 43 1 10.2590 3.6583 0.5727 44 1 9.9745 2.3147 1.7050 45 1 12.3703 1.9853 0.5144 46 1 15.5113 0.9477 0.0695 47 1 6.0400 1.5141 0.5046 48 1 5.7997 1.9513 2.2145 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752805476.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:13 Heat of formation + Delta-G solvation = -130.271789 kcal Electronic energy + Delta-G solvation = -28371.348347 eV Core-core repulsion = 24182.077004 eV Total energy + Delta-G solvation = -4189.271343 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.190 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -48.20088 -40.48603 -38.42569 -37.89129 -35.66258 -34.38427 -33.87735 -33.09670 -31.61649 -31.12188 -28.57238 -27.19443 -25.52542 -25.11111 -23.65571 -22.46177 -21.91659 -20.57847 -19.48760 -19.18601 -18.19581 -17.83007 -16.99234 -16.50723 -16.13798 -15.69616 -15.63875 -15.05457 -14.85812 -14.69241 -14.52086 -14.47579 -14.15260 -13.87677 -13.73841 -13.39571 -13.32451 -13.22119 -13.15827 -12.87776 -12.59148 -12.25374 -12.20288 -11.76443 -11.62438 -11.49982 -11.49782 -11.40421 -11.16495 -11.08239 -10.99952 -10.87110 -10.68397 -10.30841 -10.18529 -9.90189 -9.48240 -8.96775 -8.42045 -8.02801 -7.91933 -6.38314 -3.78705 2.14830 2.49914 3.19366 3.29667 3.37817 3.81998 3.94996 4.04744 4.06632 4.10774 4.28083 4.39930 4.51354 4.53508 4.65593 4.70038 4.91363 4.94118 4.97354 5.04688 5.14558 5.18785 5.24516 5.28470 5.36152 5.42921 5.45211 5.48560 5.51514 5.67125 5.70000 5.74816 5.75808 5.80129 5.84139 5.96697 6.00903 6.13074 6.23518 6.31426 6.97408 7.23843 7.59280 7.66977 7.75976 8.10704 8.65473 9.22079 9.58345 10.10277 10.79621 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.016635 B = 0.002238 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.827984 B =12510.199242 C =13862.732148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.142 4.142 3 C 0.079 3.921 4 H 0.102 0.898 5 F -0.189 7.189 6 C 0.490 3.510 7 O -0.508 6.508 8 N -0.605 5.605 9 C 0.100 3.900 10 C -0.134 4.134 11 C -0.114 4.114 12 C -0.100 4.100 13 H 0.088 0.912 14 C 0.067 3.933 15 N -0.671 5.671 16 C 0.051 3.949 17 C 0.440 3.560 18 O -0.580 6.580 19 N -0.565 5.565 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.020 3.980 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.110 3.890 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.028 0.972 42 H 0.349 0.651 43 H 0.086 0.914 44 H 0.043 0.957 45 H 0.392 0.608 46 H 0.270 0.730 47 H 0.101 0.899 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.633 7.402 10.245 29.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.180 4.180 3 C 0.040 3.960 4 H 0.120 0.880 5 F -0.170 7.170 6 C 0.275 3.725 7 O -0.382 6.382 8 N -0.339 5.339 9 C -0.023 4.023 10 C -0.173 4.173 11 C -0.152 4.152 12 C -0.119 4.119 13 H 0.106 0.894 14 C -0.063 4.063 15 N -0.304 5.304 16 C -0.082 4.082 17 C 0.226 3.774 18 O -0.464 6.464 19 N -0.202 5.202 20 C -0.426 4.426 21 H 0.121 0.879 22 C -0.181 4.181 23 N -0.545 5.545 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.012 4.012 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.046 0.954 42 H 0.169 0.831 43 H 0.104 0.896 44 H 0.061 0.939 45 H 0.225 0.775 46 H 0.080 0.920 47 H 0.120 0.880 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -26.429 7.030 8.812 28.733 hybrid contribution 0.928 -0.554 0.749 1.315 sum -25.501 6.477 9.561 27.994 Atomic orbital electron populations 1.21773 0.94088 1.02734 1.02409 1.22004 0.97247 0.93515 1.05268 1.21778 0.92193 0.96408 0.85645 0.88017 1.92889 1.92028 1.83845 1.48249 1.20985 0.90331 0.81248 0.79937 1.90800 1.65839 1.39070 1.42499 1.48134 1.08798 1.32303 1.44626 1.21915 0.95306 0.87842 0.97191 1.21910 0.96472 0.96072 1.02807 1.21546 0.94541 0.99469 0.99660 1.21537 0.94214 0.94447 1.01749 0.89412 1.21952 0.92319 0.98282 0.93764 1.60096 1.01779 1.15245 1.53256 1.21672 0.89064 1.00500 0.96952 1.19835 0.83182 0.86551 0.87874 1.90547 1.65261 1.52273 1.38286 1.41866 1.05943 1.40530 1.31882 1.19765 0.90840 1.19929 1.12110 0.87871 1.25262 0.96516 0.98472 0.97824 1.69625 1.08339 1.42865 1.33641 0.85798 0.79129 0.79579 0.79842 1.19195 1.20767 1.20795 1.21805 0.78720 0.98742 1.01921 0.92428 0.91881 0.91609 0.89238 0.89776 0.90756 0.89767 0.91065 0.90335 0.91066 0.91632 0.90585 0.95383 0.83075 0.89577 0.93903 0.77494 0.91990 0.88044 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.83 37.16 0.37 -0.53 16 2 C -0.14 -1.14 5.40 -26.73 -0.14 -1.29 16 3 C 0.08 0.70 3.19 -27.88 -0.09 0.61 16 4 H 0.10 0.55 5.71 -51.93 -0.30 0.25 16 5 F -0.19 -2.11 16.75 2.25 0.04 -2.07 16 6 C 0.49 6.00 7.04 -10.99 -0.08 5.93 16 7 O -0.51 -8.65 16.00 5.56 0.09 -8.56 16 8 N -0.60 -6.09 2.97 -172.77 -0.51 -6.60 16 9 C 0.10 0.62 6.19 -3.71 -0.02 0.59 16 10 C -0.13 -0.83 6.08 -26.61 -0.16 -0.99 16 11 C -0.11 -0.84 5.17 -26.69 -0.14 -0.97 16 12 C -0.10 -1.06 2.55 -90.50 -0.23 -1.29 16 13 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 14 C 0.07 0.80 5.15 -3.83 -0.02 0.78 16 15 N -0.67 -11.25 6.12 -115.05 -0.70 -11.95 16 16 C 0.05 0.92 6.17 -4.97 -0.03 0.89 16 17 C 0.44 10.78 7.82 -10.99 -0.09 10.69 16 18 O -0.58 -16.50 15.78 5.55 0.09 -16.42 16 19 N -0.57 -14.72 5.29 -10.96 -0.06 -14.78 16 20 C -0.30 -8.51 9.68 -14.93 -0.14 -8.65 16 21 H 0.10 3.12 7.16 -52.48 -0.38 2.75 16 22 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -24.99 13.05 55.50 0.72 -24.26 16 24 Si 0.93 21.56 29.55 -169.99 -5.02 16.54 16 25 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 C 0.11 1.25 5.36 -3.71 -0.02 1.23 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.40 7.94 -51.92 -0.41 -0.01 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 0.89 8.04 -51.93 -0.42 0.47 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.08 0.38 5.44 -51.93 -0.28 0.10 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.03 0.30 8.14 -51.92 -0.42 -0.12 16 42 H 0.35 6.21 6.82 -39.29 -0.27 5.94 16 43 H 0.09 1.43 8.14 -51.92 -0.42 1.01 16 44 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.39 9.69 7.90 -40.82 -0.32 9.36 16 46 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 47 H 0.10 1.50 5.81 -51.93 -0.30 1.20 16 48 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 389.05 15.07 5.86 5.86 Total: -1.00 -35.25 389.05 -8.12 -43.37 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: -7.73 Total: 11.39 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: -0.90 Total: 7.47 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: -0.55 Total: -57.59 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: 0.18 Total: -24.97 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.25 -8.12 -43.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752805476.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.898 kcal (2) G-P(sol) polarization free energy of solvation -35.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds