Wall clock time and date at job start Tue Mar 31 2020 05:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.47268 * 2 1 4 4 H 1.08995 * 109.47305 * 305.00334 * 3 2 1 5 5 F 1.39907 * 109.46703 * 65.00172 * 3 2 1 6 6 C 1.50695 * 109.47091 * 184.99626 * 3 2 1 7 7 O 1.21278 * 120.00630 * 316.55372 * 6 3 2 8 8 N 1.34778 * 119.99684 * 136.82214 * 6 3 2 9 9 C 1.46922 * 120.63110 * 355.00120 * 8 6 3 10 10 C 1.53621 * 108.54957 * 126.36524 * 9 8 6 11 11 C 1.53050 * 109.24260 * 54.85074 * 10 9 8 12 12 C 1.53037 * 109.53488 * 298.51688 * 11 10 9 13 13 H 1.08996 * 109.52712 * 301.39168 * 12 11 10 14 14 C 1.53009 * 109.49429 * 181.31383 * 12 11 10 15 15 N 1.46899 * 109.47018 * 175.16151 * 14 12 11 16 16 C 1.46899 * 110.99432 * 179.97438 * 15 14 12 17 17 C 1.50703 * 109.46742 * 179.97438 * 16 15 14 18 18 O 1.21296 * 120.00046 * 0.02562 * 17 16 15 19 19 N 1.34782 * 120.00231 * 179.97438 * 17 16 15 20 20 C 1.37094 * 119.99964 * 180.02562 * 19 17 16 21 21 H 1.07996 * 120.00453 * 359.97438 * 20 19 17 22 22 C 1.38953 * 119.99552 * 180.02562 * 20 19 17 23 23 N 1.31406 * 120.00208 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99749 * 179.97438 * 22 20 19 25 25 H 1.48491 * 109.47237 * 89.99770 * 24 22 20 26 26 H 1.48503 * 109.47023 * 210.00070 * 24 22 20 27 27 H 1.48504 * 109.46998 * 329.99588 * 24 22 20 28 28 C 1.46928 * 120.63163 * 175.27256 * 8 6 3 29 29 H 1.09001 * 109.46694 * 59.99423 * 1 2 3 30 30 H 1.08999 * 109.47264 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46844 * 299.99832 * 1 2 3 32 32 H 1.09002 * 109.46636 * 240.00091 * 2 1 3 33 33 H 1.08995 * 109.47071 * 120.00409 * 2 1 3 34 34 H 1.09000 * 109.58565 * 246.19769 * 9 8 6 35 35 H 1.09004 * 109.58944 * 6.61869 * 9 8 6 36 36 H 1.09001 * 109.63184 * 294.86646 * 10 9 8 37 37 H 1.08996 * 109.46715 * 174.73669 * 10 9 8 38 38 H 1.08994 * 109.46023 * 178.49061 * 11 10 9 39 39 H 1.08996 * 109.44109 * 58.52967 * 11 10 9 40 40 H 1.09001 * 109.46889 * 295.16245 * 14 12 11 41 41 H 1.08996 * 109.46929 * 55.15937 * 14 12 11 42 42 H 1.00893 * 111.00105 * 303.95270 * 15 14 12 43 43 H 1.08998 * 109.47452 * 299.99379 * 16 15 14 44 44 H 1.08997 * 109.47579 * 60.00174 * 16 15 14 45 45 H 0.96995 * 119.99500 * 0.02562 * 19 17 16 46 46 H 0.96999 * 120.00460 * 180.02562 * 23 22 20 47 47 H 1.09000 * 109.58484 * 353.37843 * 28 8 6 48 48 H 1.08998 * 109.58733 * 113.79932 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8417 5 9 1.6700 2.0679 1.1955 6 6 3.5420 1.4442 -0.1237 7 8 4.2048 0.6618 0.5238 8 7 4.1490 2.3190 -0.9500 9 6 3.3576 3.2021 -1.8175 10 6 3.8017 4.6524 -1.5739 11 6 5.3143 4.7585 -1.7819 12 6 6.0337 3.8590 -0.7742 13 1 5.7649 4.1589 0.2386 14 6 7.5466 3.9907 -0.9613 15 7 8.2377 3.2181 0.0796 16 6 9.6955 3.3211 -0.0692 17 6 10.3689 2.5182 1.0139 18 8 9.7001 1.9188 1.8292 19 7 11.7142 2.4652 1.0760 20 6 12.3267 1.7344 2.0610 21 1 11.7313 1.2014 2.7874 22 6 13.7137 1.6803 2.1253 23 7 14.4382 2.3292 1.2417 24 14 14.5483 0.6851 3.4678 25 1 14.7641 -0.7048 2.9921 26 1 15.8570 1.3031 3.8010 27 1 13.6875 0.6663 4.6777 28 6 5.6148 2.4036 -1.0048 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.5260 2.9359 -2.8610 35 1 2.2994 3.0973 -1.5778 36 1 3.5534 4.9450 -0.5537 37 1 3.2909 5.3114 -2.2759 38 1 5.6293 5.7917 -1.6362 39 1 5.5643 4.4420 -2.7945 40 1 7.8258 3.6086 -1.9432 41 1 7.8321 5.0398 -0.8850 42 1 7.9464 3.5104 1.0003 43 1 9.9894 2.9339 -1.0448 44 1 9.9964 4.3654 0.0130 45 1 12.2490 2.9442 0.4237 46 1 15.4064 2.2912 1.2863 47 1 6.0465 1.7718 -0.2285 48 1 5.9636 2.0735 -1.9833 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752805477.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:18 Heat of formation + Delta-G solvation = -129.172486 kcal Electronic energy + Delta-G solvation = -28369.118963 eV Core-core repulsion = 24179.895290 eV Total energy + Delta-G solvation = -4189.223674 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.190 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -48.15614 -40.40142 -38.39368 -37.85700 -35.62832 -34.36122 -33.87193 -33.04778 -31.58203 -31.12454 -28.53220 -27.18677 -25.45459 -25.03019 -23.59664 -22.42419 -21.94874 -20.62702 -19.43350 -19.14579 -18.14257 -17.83040 -16.97532 -16.32131 -16.09485 -15.74791 -15.60904 -14.92737 -14.87895 -14.75775 -14.47961 -14.44844 -14.14441 -13.88060 -13.71416 -13.39989 -13.33164 -13.22556 -12.81708 -12.69097 -12.60138 -12.28798 -12.17650 -11.91005 -11.56400 -11.47782 -11.46842 -11.40784 -11.20405 -11.02192 -10.97296 -10.83279 -10.65696 -10.35991 -10.17863 -9.81425 -9.47002 -8.89720 -8.41804 -8.02171 -7.91797 -6.38117 -3.78567 2.21292 2.59234 3.21187 3.29327 3.35826 3.88162 3.95192 4.02469 4.08252 4.12576 4.28586 4.44640 4.52657 4.55445 4.70060 4.72830 4.93106 4.97918 5.01812 5.09160 5.17408 5.26503 5.26972 5.29561 5.36146 5.43364 5.53135 5.55438 5.57071 5.64639 5.72948 5.75714 5.79140 5.82693 5.87000 6.00397 6.11230 6.15552 6.28587 6.30813 7.07091 7.23181 7.59125 7.67373 7.83632 8.10557 8.65623 9.22086 9.58448 10.10431 10.79729 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.016778 B = 0.002240 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.423775 B =12499.764239 C =13826.582214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.142 4.142 3 C 0.076 3.924 4 H 0.103 0.897 5 F -0.189 7.189 6 C 0.489 3.511 7 O -0.508 6.508 8 N -0.607 5.607 9 C 0.098 3.902 10 C -0.134 4.134 11 C -0.115 4.115 12 C -0.098 4.098 13 H 0.075 0.925 14 C 0.066 3.934 15 N -0.669 5.669 16 C 0.052 3.948 17 C 0.440 3.560 18 O -0.580 6.580 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.121 3.879 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.031 0.969 42 H 0.350 0.650 43 H 0.086 0.914 44 H 0.043 0.957 45 H 0.392 0.608 46 H 0.271 0.729 47 H 0.111 0.889 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.006 5.737 -12.112 29.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.181 4.181 3 C 0.037 3.963 4 H 0.120 0.880 5 F -0.170 7.170 6 C 0.274 3.726 7 O -0.382 6.382 8 N -0.341 5.341 9 C -0.025 4.025 10 C -0.172 4.172 11 C -0.153 4.153 12 C -0.118 4.118 13 H 0.093 0.907 14 C -0.064 4.064 15 N -0.302 5.302 16 C -0.081 4.081 17 C 0.226 3.774 18 O -0.464 6.464 19 N -0.202 5.202 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.194 1.194 28 C 0.000 4.000 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.049 0.951 42 H 0.169 0.831 43 H 0.104 0.896 44 H 0.061 0.939 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.129 0.871 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -25.921 4.325 -11.517 28.692 hybrid contribution 1.067 0.954 0.458 1.503 sum -24.854 5.279 -11.059 27.710 Atomic orbital electron populations 1.21773 0.94161 1.02688 1.02383 1.22007 0.97183 0.93615 1.05255 1.21810 0.92488 0.96331 0.85634 0.87975 1.92888 1.91990 1.83874 1.48257 1.20934 0.90247 0.81236 0.80160 1.90800 1.65909 1.37856 1.43622 1.48243 1.07996 1.37355 1.40527 1.22028 0.95546 0.90180 0.94700 1.21983 0.96791 0.95614 1.02854 1.21559 0.94318 0.99989 0.99446 1.21508 0.94834 0.95299 1.00117 0.90667 1.21958 0.92189 0.95564 0.96713 1.60064 1.04564 1.58609 1.06956 1.21658 0.88297 0.98303 0.99837 1.19838 0.83071 0.86539 0.87992 1.90546 1.63900 1.48708 1.43231 1.41860 1.04478 1.45045 1.28822 1.19710 0.89670 1.25691 1.07644 0.87933 1.25258 0.96368 0.97964 0.98446 1.69610 1.06522 1.42624 1.35717 0.85855 0.78325 0.79349 0.80755 1.20393 1.20976 1.19423 1.21722 0.77310 0.97132 1.03822 0.92457 0.91647 0.91903 0.89788 0.89263 0.90668 0.89776 0.91197 0.90454 0.91369 0.91423 0.90860 0.95064 0.83074 0.89621 0.93942 0.77502 0.91936 0.87102 0.91361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.83 37.16 0.37 -0.56 16 2 C -0.14 -1.18 5.39 -26.73 -0.14 -1.33 16 3 C 0.08 0.70 3.39 -27.89 -0.09 0.61 16 4 H 0.10 0.58 5.36 -51.93 -0.28 0.30 16 5 F -0.19 -2.18 16.75 2.25 0.04 -2.14 16 6 C 0.49 6.20 7.05 -10.99 -0.08 6.12 16 7 O -0.51 -8.90 16.00 5.56 0.09 -8.81 16 8 N -0.61 -6.37 2.97 -172.51 -0.51 -6.88 16 9 C 0.10 0.62 6.35 -3.49 -0.02 0.60 16 10 C -0.13 -0.81 6.10 -26.38 -0.16 -0.98 16 11 C -0.12 -0.84 5.17 -26.69 -0.14 -0.97 16 12 C -0.10 -1.02 2.48 -90.50 -0.22 -1.25 16 13 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 14 C 0.07 0.77 5.08 -3.82 -0.02 0.75 16 15 N -0.67 -10.96 5.69 -115.06 -0.65 -11.61 16 16 C 0.05 0.93 6.17 -4.97 -0.03 0.89 16 17 C 0.44 10.70 7.82 -10.98 -0.09 10.62 16 18 O -0.58 -16.38 15.78 5.54 0.09 -16.30 16 19 N -0.57 -14.67 5.29 -10.96 -0.06 -14.73 16 20 C -0.30 -8.51 9.68 -14.93 -0.14 -8.66 16 21 H 0.10 3.09 7.16 -52.49 -0.38 2.72 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.97 13.05 55.50 0.72 -24.24 16 24 Si 0.93 21.56 29.55 -169.99 -5.02 16.54 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 28 C 0.12 1.47 5.52 -3.71 -0.02 1.45 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.42 7.93 -51.93 -0.41 0.00 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 0.91 8.04 -51.93 -0.42 0.50 16 34 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.38 5.15 -51.93 -0.27 0.11 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.35 6.10 8.43 -39.30 -0.33 5.76 16 43 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 44 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.39 9.67 7.90 -40.82 -0.32 9.34 16 46 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 47 H 0.11 1.82 6.81 -51.93 -0.35 1.46 16 48 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 390.99 15.07 5.89 5.89 Total: -1.00 -34.99 390.99 -8.12 -43.11 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -7.81 Total: 11.39 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: -0.89 Total: 7.78 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: -0.50 Total: -57.47 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: 0.18 Total: -25.11 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.04 Total: -2.14 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.99 -8.12 -43.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752805477.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.060 kcal (2) G-P(sol) polarization free energy of solvation -34.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds