Wall clock time and date at job start Tue Mar 31 2020 04:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 113.99838 * 2 1 4 4 C 1.53787 * 113.61590 * 149.99581 * 3 2 1 5 5 C 1.53781 * 87.07987 * 140.06250 * 4 3 2 6 6 C 1.50701 * 113.61206 * 219.93687 * 5 4 3 7 7 O 1.21281 * 120.00144 * 358.46834 * 6 5 4 8 8 N 1.34775 * 119.99783 * 178.47107 * 6 5 4 9 9 C 1.46503 * 120.00029 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47169 * 180.02562 * 9 8 6 11 11 H 1.09005 * 109.47207 * 60.00732 * 10 9 8 12 12 O 1.42900 * 109.47263 * 300.00512 * 10 9 8 13 13 C 1.52995 * 109.47006 * 180.02562 * 10 9 8 14 14 N 1.46903 * 109.47203 * 185.00253 * 13 10 9 15 15 C 1.46905 * 111.00118 * 180.02562 * 14 13 10 16 16 C 1.50704 * 109.46998 * 180.02562 * 15 14 13 17 17 O 1.21284 * 120.00010 * 359.97438 * 16 15 14 18 18 N 1.34770 * 119.99577 * 180.02562 * 16 15 14 19 19 C 1.37104 * 119.99716 * 179.97438 * 18 16 15 20 20 H 1.07995 * 120.00007 * 0.02562 * 19 18 16 21 21 C 1.38953 * 120.00020 * 179.97438 * 19 18 16 22 22 N 1.31404 * 119.99867 * 180.02562 * 21 19 18 23 23 Si 1.86807 * 119.99929 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.46856 * 90.00064 * 23 21 19 25 25 H 1.48498 * 109.47033 * 209.99923 * 23 21 19 26 26 H 1.48498 * 109.46964 * 330.00269 * 23 21 19 27 27 C 1.53779 * 113.68812 * 247.53194 * 3 2 1 28 28 H 1.08993 * 109.47527 * 300.00460 * 1 2 3 29 29 H 1.09007 * 109.46794 * 60.00383 * 1 2 3 30 30 H 1.09000 * 109.47362 * 180.02562 * 1 2 3 31 31 H 1.09003 * 112.85562 * 18.79986 * 3 2 1 32 32 H 1.09005 * 113.61051 * 25.51654 * 4 3 2 33 33 H 1.08993 * 113.61359 * 254.61691 * 4 3 2 34 34 H 1.09002 * 113.61228 * 89.11929 * 5 4 3 35 35 H 0.97003 * 120.00033 * 0.02562 * 8 6 5 36 36 H 1.08995 * 109.47289 * 300.00809 * 9 8 6 37 37 H 1.09005 * 109.46459 * 60.00381 * 9 8 6 38 38 H 0.96700 * 113.99958 * 299.99636 * 12 10 9 39 39 H 1.09005 * 109.47501 * 305.00082 * 13 10 9 40 40 H 1.09004 * 109.47494 * 65.00094 * 13 10 9 41 41 H 1.00903 * 110.99914 * 303.95093 * 14 13 10 42 42 H 1.09005 * 109.46597 * 299.99891 * 15 14 13 43 43 H 1.09001 * 109.47343 * 59.99836 * 15 14 13 44 44 H 0.97001 * 120.00711 * 359.97438 * 18 16 15 45 45 H 0.97004 * 119.99926 * 179.97438 * 22 21 19 46 46 H 1.09003 * 113.61775 * 105.46614 * 27 3 2 47 47 H 1.08996 * 113.61960 * 334.55340 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3756 1.3720 0.7046 5 6 3.8220 2.3199 -0.4210 6 6 5.2329 2.0763 -0.8912 7 8 5.9072 1.2160 -0.3657 8 7 5.7454 2.8146 -1.8955 9 6 7.1172 2.5782 -2.3523 10 6 7.4485 3.5431 -3.4925 11 1 7.3554 4.5698 -3.1383 12 8 6.5420 3.3291 -4.5762 13 6 8.8809 3.2958 -3.9699 14 7 9.2402 4.2992 -4.9810 15 6 10.6120 4.0920 -5.4639 16 6 10.9442 5.1380 -6.4968 17 8 10.1193 5.9734 -6.8010 18 7 12.1577 5.1444 -7.0831 19 6 12.4597 6.0956 -8.0231 20 1 11.7255 6.8400 -8.2934 21 6 13.7110 6.1026 -8.6273 22 7 14.0007 7.0146 -9.5279 23 14 14.9819 4.8163 -8.1583 24 1 14.8366 3.6317 -9.0419 25 1 16.3441 5.3863 -8.3146 26 1 14.7750 4.4083 -6.7455 27 6 2.7532 1.6510 -1.3013 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 1.3138 2.0790 0.3237 32 1 3.9095 0.4217 0.7126 33 1 3.3380 1.8458 1.6854 34 1 3.6208 3.3707 -0.2123 35 1 5.2062 3.5030 -2.3155 36 1 7.8086 2.7418 -1.5258 37 1 7.2104 1.5514 -2.7061 38 1 6.5707 2.4345 -4.9422 39 1 9.5641 3.3717 -3.1239 40 1 8.9517 2.2992 -4.4058 41 1 8.5829 4.2926 -5.7465 42 1 11.3074 4.1732 -4.6284 43 1 10.6944 3.1010 -5.9103 44 1 12.8174 4.4760 -6.8401 45 1 14.8743 7.0197 -9.9494 46 1 2.2134 2.3503 -1.9399 47 1 3.1170 0.7771 -1.8417 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753915487.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:30 Heat of formation + Delta-G solvation = -142.409315 kcal Electronic energy + Delta-G solvation = -26998.056461 eV Core-core repulsion = 22795.886006 eV Total energy + Delta-G solvation = -4202.170455 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.82831 -39.17291 -38.57825 -37.96847 -36.21290 -35.05833 -34.52991 -33.85860 -31.68079 -30.61087 -28.14091 -27.27026 -26.22654 -25.89928 -24.53104 -23.06939 -22.00260 -21.23779 -19.95742 -19.40099 -18.40957 -18.22965 -17.17241 -16.71861 -16.58020 -16.29670 -15.89812 -15.68544 -15.52137 -15.22906 -15.19361 -14.81720 -14.48343 -14.37299 -13.83742 -13.57639 -13.39223 -13.18031 -12.97294 -12.93565 -12.71018 -12.47888 -12.28669 -12.12147 -11.93188 -11.72958 -11.66785 -11.38055 -11.23937 -11.23012 -11.15433 -10.60780 -10.49169 -10.09927 -9.98249 -9.92382 -9.58309 -9.42999 -8.61592 -8.23293 -8.17435 -6.31898 -3.83447 2.27879 2.71938 3.01944 3.05796 3.14376 3.36480 3.72611 3.90517 3.92073 4.03188 4.09346 4.13047 4.23082 4.31435 4.51257 4.63010 4.70222 4.77854 4.82418 4.88534 4.90038 4.95520 5.15348 5.16448 5.21084 5.22029 5.28780 5.36203 5.45620 5.47859 5.54627 5.57439 5.74853 5.76697 5.81775 5.91155 6.05520 6.73617 6.99376 7.15560 7.31988 7.54639 7.57508 7.89516 8.13610 8.58819 8.94113 9.41448 9.81563 10.81216 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.040763 B = 0.001500 C = 0.001475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.727240 B =18666.293961 C =18984.701444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.375 6.375 3 C 0.061 3.939 4 C -0.113 4.113 5 C -0.138 4.138 6 C 0.525 3.475 7 O -0.540 6.540 8 N -0.721 5.721 9 C 0.088 3.912 10 C 0.098 3.902 11 H 0.117 0.883 12 O -0.554 6.554 13 C 0.031 3.969 14 N -0.664 5.664 15 C 0.047 3.953 16 C 0.449 3.551 17 O -0.563 6.563 18 N -0.590 5.590 19 C -0.306 4.306 20 H 0.120 0.880 21 C 0.042 3.958 22 N -0.881 5.881 23 Si 0.880 3.120 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.269 1.269 27 C -0.138 4.138 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.078 0.922 34 H 0.117 0.883 35 H 0.407 0.593 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.374 0.626 39 H 0.083 0.917 40 H 0.033 0.967 41 H 0.358 0.642 42 H 0.087 0.913 43 H 0.044 0.956 44 H 0.370 0.630 45 H 0.273 0.727 46 H 0.080 0.920 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.975 -14.250 20.025 33.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.293 6.293 3 C 0.003 3.997 4 C -0.151 4.151 5 C -0.159 4.159 6 C 0.311 3.689 7 O -0.416 6.416 8 N -0.373 5.373 9 C -0.037 4.037 10 C 0.038 3.962 11 H 0.135 0.865 12 O -0.359 6.359 13 C -0.100 4.100 14 N -0.297 5.297 15 C -0.085 4.085 16 C 0.235 3.765 17 O -0.445 6.445 18 N -0.230 5.230 19 C -0.435 4.435 20 H 0.137 0.863 21 C -0.161 4.161 22 N -0.521 5.521 23 Si 0.706 3.294 24 H -0.197 1.197 25 H -0.201 1.201 26 H -0.195 1.195 27 C -0.176 4.176 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.123 0.877 33 H 0.097 0.903 34 H 0.135 0.865 35 H 0.242 0.758 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.221 0.779 39 H 0.101 0.899 40 H 0.051 0.949 41 H 0.178 0.822 42 H 0.105 0.895 43 H 0.062 0.938 44 H 0.203 0.797 45 H 0.084 0.916 46 H 0.098 0.902 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -22.730 -13.268 20.602 33.424 hybrid contribution 0.939 -1.691 -0.607 2.028 sum -21.791 -14.959 19.995 33.143 Atomic orbital electron populations 1.22816 0.81087 1.02919 0.99981 1.87984 1.19717 1.27123 1.94507 1.23702 0.94093 0.85548 0.96394 1.23127 0.94404 1.00615 0.96986 1.22496 0.92041 1.01648 0.99739 1.20326 0.88340 0.80976 0.79254 1.90712 1.61308 1.33108 1.56511 1.45870 1.15263 1.39352 1.36815 1.22050 0.83733 0.99967 0.97969 1.22242 0.88319 1.00246 0.85375 0.86479 1.86653 1.62386 1.36248 1.50579 1.22547 0.96331 0.93748 0.97360 1.60000 1.03081 1.48631 1.18028 1.21725 0.91568 0.97038 0.98204 1.19679 0.83489 0.88096 0.85238 1.90573 1.48161 1.40551 1.65205 1.42205 1.12950 1.29675 1.38167 1.19442 1.00719 1.08814 1.14489 0.86265 1.25035 0.97259 0.97350 0.96454 1.69620 1.22662 1.33538 1.26274 0.86670 0.82059 0.81879 0.78765 1.19668 1.20144 1.19491 1.23437 0.95834 1.01060 0.97256 0.93945 0.93919 0.89612 0.89062 0.87670 0.90331 0.86504 0.75805 0.90279 0.91162 0.77932 0.89876 0.94908 0.82167 0.89471 0.93761 0.79694 0.91603 0.90180 0.88678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 10.85 101.05 1.10 1.23 16 2 O -0.37 -3.01 10.72 -35.23 -0.38 -3.39 16 3 C 0.06 0.37 4.31 -25.92 -0.11 0.26 16 4 C -0.11 -0.81 7.23 -25.92 -0.19 -1.00 16 5 C -0.14 -0.87 4.15 -90.96 -0.38 -1.25 16 6 C 0.53 4.89 7.36 -10.99 -0.08 4.81 16 7 O -0.54 -7.22 15.91 5.56 0.09 -7.13 16 8 N -0.72 -5.51 5.45 -60.29 -0.33 -5.83 16 9 C 0.09 0.70 5.34 -4.04 -0.02 0.68 16 10 C 0.10 0.85 3.29 -26.73 -0.09 0.76 16 11 H 0.12 1.14 8.14 -51.93 -0.42 0.71 16 12 O -0.55 -5.02 12.60 -35.23 -0.44 -5.46 16 13 C 0.03 0.31 5.36 -3.82 -0.02 0.29 16 14 N -0.66 -9.83 6.13 -115.05 -0.70 -10.53 16 15 C 0.05 0.76 6.17 -4.97 -0.03 0.73 16 16 C 0.45 10.17 7.82 -10.99 -0.09 10.08 16 17 O -0.56 -15.18 15.78 5.55 0.09 -15.09 16 18 N -0.59 -14.03 5.09 -10.96 -0.06 -14.09 16 19 C -0.31 -8.67 10.16 -14.93 -0.15 -8.82 16 20 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 21 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 22 N -0.88 -25.72 13.96 55.50 0.77 -24.95 16 23 Si 0.88 19.30 27.74 -169.99 -4.71 14.58 16 24 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 25 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.27 -5.38 6.52 56.52 0.37 -5.02 16 27 C -0.14 -0.82 7.47 -25.92 -0.19 -1.01 16 28 H 0.04 0.16 8.14 -51.93 -0.42 -0.27 16 29 H 0.04 0.17 8.14 -51.92 -0.42 -0.26 16 30 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.09 0.37 7.87 -51.93 -0.41 -0.04 16 32 H 0.10 1.02 7.45 -51.93 -0.39 0.63 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.12 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.41 2.48 8.35 -40.82 -0.34 2.14 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.37 2.32 9.04 45.56 0.41 2.74 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.36 5.70 7.99 -39.29 -0.31 5.38 16 42 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.37 7.69 5.76 -40.82 -0.24 7.45 16 45 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 46 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.09 0.72 8.10 -51.93 -0.42 0.30 16 LS Contribution 395.19 15.07 5.96 5.96 Total: -1.00 -36.50 395.19 -6.81 -43.32 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: -6.75 Total: 14.78 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: -0.35 Total: 7.83 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: -0.31 Total: -55.40 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -0.65 Total: -31.07 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -4.71 Total: 14.58 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.50 -6.81 -43.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753915487.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.092 kcal (2) G-P(sol) polarization free energy of solvation -36.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds