Wall clock time and date at job start Tue Mar 31 2020 04:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00258 * 2 1 4 4 C 1.53785 * 113.69063 * 110.93650 * 3 2 1 5 5 C 1.53779 * 87.08093 * 139.99216 * 4 3 2 6 6 C 1.50701 * 113.69072 * 220.00479 * 5 4 3 7 7 O 1.21280 * 119.99668 * 97.53283 * 6 5 4 8 8 N 1.34777 * 120.00062 * 277.53753 * 6 5 4 9 9 C 1.46503 * 119.99819 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.46826 * 179.97438 * 9 8 6 11 11 H 1.08999 * 109.47214 * 304.99709 * 10 9 8 12 12 O 1.42904 * 109.47321 * 65.00026 * 10 9 8 13 13 C 1.53002 * 109.46830 * 184.99964 * 10 9 8 14 14 N 1.46901 * 109.46879 * 180.02562 * 13 10 9 15 15 C 1.46893 * 110.99912 * 180.02562 * 14 13 10 16 16 C 1.50705 * 109.47299 * 179.97438 * 15 14 13 17 17 O 1.21285 * 119.99660 * 0.02562 * 16 15 14 18 18 N 1.34779 * 120.00065 * 179.97438 * 16 15 14 19 19 C 1.37091 * 119.99886 * 180.02562 * 18 16 15 20 20 H 1.07998 * 120.00008 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99906 * 180.02562 * 19 18 16 22 22 N 1.31411 * 120.00195 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99997 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47132 * 59.99746 * 23 21 19 25 25 H 1.48499 * 109.47000 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.46939 * 299.99940 * 23 21 19 27 27 C 1.53781 * 113.61413 * 208.47320 * 3 2 1 28 28 H 1.09002 * 109.46781 * 300.00325 * 1 2 3 29 29 H 1.09002 * 109.46817 * 60.00169 * 1 2 3 30 30 H 1.08995 * 109.47317 * 179.97438 * 1 2 3 31 31 H 1.09002 * 112.84974 * 339.66626 * 3 2 1 32 32 H 1.09003 * 113.60734 * 254.54335 * 4 3 2 33 33 H 1.08996 * 113.61146 * 25.43833 * 4 3 2 34 34 H 1.09003 * 113.61186 * 89.11185 * 5 4 3 35 35 H 0.96997 * 119.99534 * 0.02562 * 8 6 5 36 36 H 1.08995 * 109.46896 * 299.99664 * 9 8 6 37 37 H 1.09001 * 109.46875 * 59.99850 * 9 8 6 38 38 H 0.96704 * 113.99640 * 59.99848 * 12 10 9 39 39 H 1.08999 * 109.47014 * 299.99867 * 13 10 9 40 40 H 1.09001 * 109.47041 * 60.00078 * 13 10 9 41 41 H 1.00896 * 111.00500 * 56.04518 * 14 13 10 42 42 H 1.09000 * 109.47505 * 300.00215 * 15 14 13 43 43 H 1.09003 * 109.47384 * 59.99653 * 15 14 13 44 44 H 0.97007 * 119.99790 * 0.02562 * 18 16 15 45 45 H 0.96999 * 120.00289 * 179.97438 * 22 21 19 46 46 H 1.09005 * 113.61302 * 334.47944 * 27 3 2 47 47 H 1.08993 * 113.62030 * 105.38790 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 2.7213 1.6652 1.3153 5 6 3.8114 2.3246 0.4540 6 6 5.2104 2.0863 0.9612 7 8 5.8872 1.2020 0.4807 8 7 5.7094 2.8559 1.9488 9 6 7.0692 2.6239 2.4422 10 6 7.3864 3.6265 3.5535 11 1 7.2244 4.6397 3.1858 12 8 6.5315 3.3835 4.6726 13 6 8.8463 3.4669 3.9827 14 7 9.1507 4.4292 5.0502 15 6 10.5473 4.3052 5.4881 16 6 10.8220 5.3061 6.5807 17 8 9.9408 6.0492 6.9578 18 7 12.0466 5.3747 7.1395 19 6 12.2963 6.2849 8.1338 20 1 11.5118 6.9472 8.4691 21 6 13.5589 6.3560 8.7095 22 7 14.5135 5.5505 8.3013 23 14 13.8993 7.5967 10.0639 24 1 12.9953 7.3359 11.2128 25 1 15.3111 7.4709 10.5070 26 1 13.6620 8.9692 9.5490 27 6 3.3923 1.3643 -0.6718 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.3220 2.0752 -0.3490 32 1 2.1660 2.3713 1.9327 33 1 3.0715 0.7972 1.8738 34 1 3.6155 3.3730 0.2291 35 1 5.1678 3.5628 2.3333 36 1 7.1452 1.6099 2.8346 37 1 7.7789 2.7514 1.6248 38 1 6.6224 2.4986 5.0520 39 1 9.0082 2.4537 4.3504 40 1 9.4983 3.6523 3.1291 41 1 8.5167 4.3197 5.8274 42 1 10.7217 3.2976 5.8656 43 1 11.2109 4.4970 4.6449 44 1 12.7513 4.7801 6.8381 45 1 15.3951 5.6004 8.7029 46 1 3.9262 0.4141 -0.6564 47 1 3.3790 1.8275 -1.6583 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753915488.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:36 Heat of formation + Delta-G solvation = -149.383388 kcal Electronic energy + Delta-G solvation = -26938.559821 eV Core-core repulsion = 22736.086947 eV Total energy + Delta-G solvation = -4202.472873 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 2.71 seconds Orbital eigenvalues (eV) -40.80514 -39.12906 -38.44678 -37.85519 -36.19117 -34.95508 -34.49781 -33.78573 -31.24665 -30.51639 -28.06331 -27.18007 -26.20995 -25.83007 -24.57635 -23.15178 -21.93700 -21.20717 -19.93150 -19.26303 -18.22521 -17.90439 -17.16602 -16.66998 -16.52168 -16.28942 -15.87024 -15.64638 -15.46133 -15.15300 -15.12640 -14.51876 -14.45664 -14.35602 -13.81205 -13.74024 -13.44722 -13.03924 -12.95645 -12.90444 -12.60905 -12.35253 -12.26634 -11.82838 -11.65957 -11.59118 -11.51790 -11.36239 -11.20879 -11.17087 -11.00884 -10.45486 -10.43643 -10.21518 -10.06662 -9.90038 -9.50190 -9.40016 -8.47456 -8.09826 -7.96317 -6.41740 -3.82682 2.30311 2.75184 3.20289 3.25953 3.30395 3.38446 3.89927 3.94010 3.96221 4.05298 4.17022 4.24239 4.25272 4.33258 4.56614 4.73464 4.78313 4.82120 4.89832 4.90360 4.91579 5.11134 5.16909 5.22615 5.23120 5.28996 5.30788 5.40792 5.47570 5.55971 5.56980 5.73995 5.76925 5.88174 5.94899 6.08920 6.24884 6.75248 7.13068 7.18063 7.37773 7.54984 7.65876 7.92134 8.05900 8.61149 9.17683 9.53923 10.05524 10.75913 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.045387 B = 0.001443 C = 0.001418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.765602 B =19399.745568 C =19737.859684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.375 6.375 3 C 0.061 3.939 4 C -0.138 4.138 5 C -0.138 4.138 6 C 0.525 3.475 7 O -0.539 6.539 8 N -0.721 5.721 9 C 0.088 3.912 10 C 0.099 3.901 11 H 0.116 0.884 12 O -0.553 6.553 13 C 0.030 3.970 14 N -0.663 5.663 15 C 0.050 3.950 16 C 0.440 3.560 17 O -0.582 6.582 18 N -0.563 5.563 19 C -0.301 4.301 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.273 1.273 27 C -0.113 4.113 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.116 0.884 35 H 0.406 0.594 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.373 0.627 39 H 0.032 0.968 40 H 0.083 0.917 41 H 0.356 0.644 42 H 0.043 0.957 43 H 0.086 0.914 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.105 0.895 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.491 -10.274 -17.409 30.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.293 6.293 3 C 0.003 3.997 4 C -0.176 4.176 5 C -0.159 4.159 6 C 0.311 3.689 7 O -0.416 6.416 8 N -0.373 5.373 9 C -0.037 4.037 10 C 0.039 3.961 11 H 0.133 0.867 12 O -0.358 6.358 13 C -0.100 4.100 14 N -0.297 5.297 15 C -0.082 4.082 16 C 0.225 3.775 17 O -0.466 6.466 18 N -0.200 5.200 19 C -0.430 4.430 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.151 4.151 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.113 0.887 34 H 0.134 0.866 35 H 0.241 0.759 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.221 0.779 39 H 0.050 0.950 40 H 0.101 0.899 41 H 0.177 0.823 42 H 0.061 0.939 43 H 0.104 0.896 44 H 0.225 0.775 45 H 0.082 0.918 46 H 0.124 0.876 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -23.314 -9.464 -17.972 30.921 hybrid contribution 0.575 -0.561 1.261 1.496 sum -22.739 -10.026 -16.711 29.947 Atomic orbital electron populations 1.22811 0.81104 1.02910 0.99970 1.87984 1.19703 1.27128 1.94514 1.23701 0.94128 0.85522 0.96379 1.23443 0.95774 1.01085 0.97330 1.22496 0.92194 1.01613 0.99629 1.20322 0.88167 0.81271 0.79164 1.90713 1.60599 1.32303 1.57987 1.45889 1.16247 1.36993 1.38171 1.22072 0.83989 0.99841 0.97814 1.22226 0.89265 0.99571 0.85027 0.86660 1.86654 1.63832 1.37844 1.47476 1.22535 0.96043 0.94347 0.97106 1.59964 1.03665 1.51445 1.14652 1.21687 0.90628 0.97563 0.98362 1.19787 0.84025 0.87665 0.85986 1.90529 1.45211 1.45531 1.65328 1.41853 1.10051 1.34294 1.33799 1.19663 0.97132 1.13947 1.12286 0.87957 1.25258 0.95249 0.98233 0.99125 1.69602 1.03402 1.38145 1.43193 0.85913 0.77178 0.80479 0.80622 1.19916 1.20974 1.19871 1.23117 0.94339 1.00563 0.97051 0.93929 0.93958 0.89615 0.89092 0.90209 0.88663 0.86552 0.75895 0.91122 0.90286 0.77941 0.94995 0.89898 0.82311 0.93904 0.89611 0.77463 0.91816 0.87628 0.90326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 10.85 101.05 1.10 1.24 16 2 O -0.37 -3.08 10.72 -35.23 -0.38 -3.46 16 3 C 0.06 0.38 4.30 -25.92 -0.11 0.27 16 4 C -0.14 -0.85 7.47 -25.92 -0.19 -1.05 16 5 C -0.14 -0.90 4.14 -90.96 -0.38 -1.28 16 6 C 0.52 5.04 7.36 -10.98 -0.08 4.96 16 7 O -0.54 -7.37 15.90 5.56 0.09 -7.29 16 8 N -0.72 -5.75 5.50 -60.29 -0.33 -6.08 16 9 C 0.09 0.74 5.31 -4.04 -0.02 0.72 16 10 C 0.10 0.91 3.27 -26.73 -0.09 0.82 16 11 H 0.12 1.16 8.14 -51.93 -0.42 0.73 16 12 O -0.55 -5.39 12.62 -35.23 -0.44 -5.84 16 13 C 0.03 0.33 5.39 -3.82 -0.02 0.31 16 14 N -0.66 -10.40 6.12 -115.06 -0.70 -11.10 16 15 C 0.05 0.87 6.17 -4.98 -0.03 0.84 16 16 C 0.44 10.42 7.82 -10.98 -0.09 10.33 16 17 O -0.58 -15.93 15.78 5.55 0.09 -15.84 16 18 N -0.56 -14.30 5.29 -10.96 -0.06 -14.36 16 19 C -0.30 -8.42 9.68 -14.94 -0.14 -8.57 16 20 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 21 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 22 N -0.90 -24.54 13.05 55.50 0.72 -23.82 16 23 Si 0.93 21.07 29.55 -169.99 -5.02 16.04 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 27 C -0.11 -0.83 7.24 -25.92 -0.19 -1.02 16 28 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.38 7.88 -51.93 -0.41 -0.03 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.09 0.75 8.10 -51.93 -0.42 0.33 16 34 H 0.12 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.41 2.58 8.47 -40.82 -0.35 2.23 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.37 2.59 9.05 45.56 0.41 3.01 16 39 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.36 5.95 7.82 -39.29 -0.31 5.64 16 42 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 45 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 46 H 0.11 1.04 7.44 -51.93 -0.39 0.66 16 47 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 398.32 15.07 6.00 6.00 Total: -1.00 -35.30 398.32 -7.16 -42.47 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: -6.79 Total: 15.15 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: -0.34 Total: 8.11 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: -0.37 Total: -55.36 kcal Atomic # 8 Polarization: -31.78 SS G_CDS: -0.65 Total: -32.42 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.30 -7.16 -42.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753915488.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.916 kcal (2) G-P(sol) polarization free energy of solvation -35.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.71 seconds