Wall clock time and date at job start Tue Mar 31 2020 04:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 109.47480 * 2 1 4 4 C 1.53004 * 109.46719 * 120.00427 * 2 1 3 5 5 N 1.46504 * 109.46772 * 174.99952 * 4 2 1 6 6 C 1.46494 * 119.99868 * 269.99592 * 5 4 2 7 7 C 1.34773 * 120.00081 * 89.99856 * 5 4 2 8 8 O 1.21283 * 120.00351 * 354.64705 * 7 5 4 9 9 C 1.50702 * 120.00158 * 174.64902 * 7 5 4 10 10 H 1.08999 * 109.52563 * 44.05925 * 9 7 5 11 11 C 1.53147 * 109.52150 * 283.86209 * 9 7 5 12 12 O 1.43074 * 109.14908 * 184.78020 * 11 9 7 13 13 C 1.43078 * 113.58898 * 57.95915 * 12 11 9 14 14 C 1.53147 * 109.14885 * 302.04098 * 13 12 11 15 15 O 1.43070 * 109.14689 * 55.31645 * 14 13 12 16 16 N 1.46903 * 109.46781 * 239.99855 * 2 1 3 17 17 C 1.46897 * 110.99545 * 85.00658 * 16 2 1 18 18 C 1.50711 * 109.46886 * 179.97438 * 17 16 2 19 19 O 1.21291 * 119.99589 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99975 * 179.97438 * 18 17 16 21 21 C 1.37096 * 119.99932 * 180.02562 * 20 18 17 22 22 H 1.07995 * 119.99978 * 359.97438 * 21 20 18 23 23 C 1.38951 * 119.99721 * 179.72159 * 21 20 18 24 24 N 1.31412 * 120.00261 * 0.27676 * 23 21 20 25 25 Si 1.86804 * 119.99774 * 180.27474 * 23 21 20 26 26 H 1.48504 * 109.47160 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47191 * 119.99858 * 25 23 21 28 28 H 1.48505 * 109.46878 * 240.00115 * 25 23 21 29 29 H 1.09000 * 109.47146 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47024 * 299.99877 * 1 2 3 31 31 H 1.08999 * 109.46660 * 59.99861 * 1 2 3 32 32 H 1.08998 * 109.47145 * 294.99563 * 4 2 1 33 33 H 1.08997 * 109.47699 * 55.00031 * 4 2 1 34 34 H 1.09005 * 109.47087 * 95.14905 * 6 5 4 35 35 H 1.08999 * 109.47691 * 215.14531 * 6 5 4 36 36 H 1.08998 * 109.47434 * 335.14986 * 6 5 4 37 37 H 1.08999 * 109.52465 * 304.69034 * 11 9 7 38 38 H 1.09001 * 109.52245 * 64.88424 * 11 9 7 39 39 H 1.09005 * 109.52161 * 182.14277 * 13 12 11 40 40 H 1.09001 * 109.58021 * 61.97554 * 13 12 11 41 41 H 1.08999 * 109.52465 * 295.40946 * 14 13 12 42 42 H 1.09004 * 109.57220 * 175.24921 * 14 13 12 43 43 H 1.00898 * 111.00136 * 321.04971 * 16 2 1 44 44 H 1.08994 * 109.47867 * 60.00073 * 17 16 2 45 45 H 1.09004 * 109.47196 * 299.98975 * 17 16 2 46 46 H 0.97000 * 119.99815 * 359.97438 * 20 18 17 47 47 H 0.97000 * 119.99509 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 1.2492 5 7 3.5000 -0.8265 1.1906 6 6 4.1257 -1.9921 0.5612 7 6 4.2675 0.1490 1.7156 8 8 3.7532 1.1581 2.1492 9 6 5.7649 -0.0141 1.7639 10 1 6.1189 -0.4124 0.8131 11 6 6.1386 -0.9770 2.8947 12 8 7.5637 -1.0397 3.0060 13 6 8.1754 0.2305 3.2498 14 6 7.8017 1.1934 2.1190 15 8 6.3767 1.2560 2.0078 16 7 2.0196 -0.6925 -1.1995 17 6 2.0825 0.2226 -2.3468 18 6 2.5885 -0.5215 -3.5558 19 8 2.8695 -1.6983 -3.4697 20 7 2.7287 0.1206 -4.7324 21 6 3.1885 -0.5565 -5.8323 22 1 3.4387 -1.6043 -5.7557 23 6 3.3275 0.1041 -7.0467 24 7 3.0235 1.3792 -7.1398 25 14 3.9467 -0.8203 -8.5473 26 1 4.2164 -2.2340 -8.1813 27 1 2.9175 -0.7741 -9.6167 28 1 5.1980 -0.1878 -9.0367 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 1.7516 -0.1585 2.1370 33 1 1.6053 -1.7199 1.2951 34 1 4.3631 -1.7606 -0.4772 35 1 5.0414 -2.2457 1.0953 36 1 3.4383 -2.8372 0.5971 37 1 5.7153 -0.6187 3.8331 38 1 5.7466 -1.9695 2.6725 39 1 9.2585 0.1125 3.2847 40 1 7.8216 0.6299 4.2002 41 1 8.2251 0.8352 1.1807 42 1 8.1939 2.1861 2.3402 43 1 1.4495 -1.4979 -1.4101 44 1 2.7589 1.0461 -2.1182 45 1 1.0871 0.6163 -2.5525 46 1 2.5036 1.0616 -4.8012 47 1 3.1209 1.8404 -7.9875 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755578721.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:46:37 Heat of formation + Delta-G solvation = -146.427021 kcal Electronic energy + Delta-G solvation = -29318.360893 eV Core-core repulsion = 25116.016217 eV Total energy + Delta-G solvation = -4202.344676 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.76031 -39.28005 -38.32319 -36.86076 -36.18797 -34.95171 -33.89519 -32.17191 -31.28379 -30.72797 -28.62938 -27.22538 -26.43069 -26.07018 -24.75418 -23.87518 -22.06140 -20.98597 -19.58716 -19.20917 -17.89989 -17.57165 -17.14905 -16.93781 -16.38875 -16.03765 -15.78723 -15.56154 -15.36677 -14.93115 -14.69496 -14.44250 -14.39554 -13.85410 -13.75873 -13.49995 -13.18157 -13.14622 -12.99097 -12.67048 -12.43160 -12.20614 -12.15852 -11.91247 -11.82063 -11.67108 -11.55494 -11.33979 -11.10000 -11.06496 -10.91774 -10.85570 -10.35603 -10.23435 -9.75771 -9.52667 -9.45914 -8.78210 -8.38027 -7.99650 -7.93678 -6.42357 -3.83340 2.42385 2.69073 3.15368 3.25927 3.32773 3.35329 3.65456 3.90642 4.09480 4.22416 4.32379 4.38403 4.62095 4.66287 4.80132 4.87166 4.92512 5.01594 5.06129 5.13386 5.22861 5.23879 5.28535 5.33923 5.40658 5.42985 5.45973 5.56408 5.66159 5.74809 5.78728 5.94629 6.05564 6.09086 6.16305 6.27829 6.44958 6.56559 6.70144 7.20194 7.35447 7.54341 7.69235 8.05708 8.12131 8.60313 9.17005 9.54035 10.04891 10.75424 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.011950 B = 0.002965 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.445549 B = 9442.274385 C =10824.166391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.063 3.937 3 H 0.082 0.918 4 C 0.133 3.867 5 N -0.591 5.591 6 C 0.080 3.920 7 C 0.524 3.476 8 O -0.525 6.525 9 C 0.038 3.962 10 H 0.095 0.905 11 C 0.038 3.962 12 O -0.373 6.373 13 C 0.021 3.979 14 C 0.022 3.978 15 O -0.352 6.352 16 N -0.658 5.658 17 C 0.052 3.948 18 C 0.442 3.558 19 O -0.585 6.585 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.281 1.281 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.114 0.886 39 H 0.108 0.892 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.110 0.890 43 H 0.347 0.653 44 H 0.082 0.918 45 H 0.042 0.958 46 H 0.392 0.608 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.443 -2.605 20.467 20.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.049 4.049 3 H 0.100 0.900 4 C 0.010 3.990 5 N -0.324 5.324 6 C -0.063 4.063 7 C 0.310 3.690 8 O -0.400 6.400 9 C -0.024 4.024 10 H 0.113 0.887 11 C -0.039 4.039 12 O -0.291 6.291 13 C -0.056 4.056 14 C -0.055 4.055 15 O -0.270 6.270 16 N -0.289 5.289 17 C -0.081 4.081 18 C 0.228 3.772 19 O -0.469 6.469 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.542 5.542 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.207 1.207 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.132 0.868 39 H 0.126 0.874 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.128 0.872 43 H 0.167 0.833 44 H 0.101 0.899 45 H 0.060 0.940 46 H 0.225 0.775 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.045 -2.664 20.742 21.301 hybrid contribution -0.749 0.420 -1.315 1.570 sum 3.297 -2.245 19.428 19.833 Atomic orbital electron populations 1.22449 0.96840 1.02219 1.02492 1.22038 0.92559 0.99024 0.91269 0.89967 1.21530 0.78828 1.01099 0.97529 1.47447 1.06358 1.21506 1.57050 1.21977 0.97503 0.87339 0.99476 1.19806 0.87587 0.83302 0.78343 1.90700 1.74354 1.27662 1.47328 1.22600 0.92605 0.86809 1.00346 0.88693 1.23175 0.82384 1.00684 0.97692 1.88126 1.18888 1.29227 1.92902 1.23319 0.99384 0.84736 0.98125 1.23346 0.81734 1.01564 0.98814 1.88216 1.19061 1.26706 1.92988 1.60178 1.57329 1.09012 1.02427 1.21678 0.99827 0.95727 0.90866 1.19809 0.85072 0.88188 0.84143 1.90501 1.55505 1.16226 1.84687 1.41885 1.57677 1.12498 1.07998 1.19738 1.39956 0.96476 0.86664 0.87882 1.25271 0.97671 0.95778 0.99270 1.69625 1.48682 1.08902 1.27031 0.85809 0.78243 0.79616 0.80718 1.19217 1.20790 1.20737 0.92260 0.92027 0.92227 0.89856 0.90329 0.90089 0.92387 0.90634 0.91510 0.86842 0.87435 0.91890 0.91641 0.87204 0.83339 0.89940 0.93963 0.77494 0.91917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.88 9.16 37.16 0.34 -1.54 16 2 C 0.06 0.78 2.89 -67.71 -0.20 0.59 16 3 H 0.08 1.21 7.80 -51.93 -0.40 0.81 16 4 C 0.13 1.48 5.15 -4.04 -0.02 1.46 16 5 N -0.59 -7.10 2.73 -181.57 -0.50 -7.60 16 6 C 0.08 0.84 9.17 59.84 0.55 1.39 16 7 C 0.52 7.40 6.95 -10.99 -0.08 7.33 16 8 O -0.52 -9.25 16.21 -13.79 -0.22 -9.47 16 9 C 0.04 0.47 2.41 -27.81 -0.07 0.40 16 10 H 0.10 1.14 7.31 -51.93 -0.38 0.76 16 11 C 0.04 0.38 6.09 37.23 0.23 0.60 16 12 O -0.37 -3.87 10.85 -48.81 -0.53 -4.40 16 13 C 0.02 0.17 7.05 37.23 0.26 0.44 16 14 C 0.02 0.21 7.05 37.23 0.26 0.47 16 15 O -0.35 -4.82 10.07 -62.28 -0.63 -5.44 16 16 N -0.66 -9.88 4.72 -107.99 -0.51 -10.39 16 17 C 0.05 0.91 5.97 -4.97 -0.03 0.88 16 18 C 0.44 10.22 7.82 -10.98 -0.09 10.14 16 19 O -0.58 -15.17 15.78 5.55 0.09 -15.08 16 20 N -0.56 -14.26 5.29 -10.96 -0.06 -14.32 16 21 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 22 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.63 13.05 55.50 0.72 -23.90 16 25 Si 0.93 20.97 29.55 -169.99 -5.02 15.95 16 26 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 28 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 29 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.67 7.45 -51.93 -0.39 0.28 16 32 H 0.08 0.93 7.50 -51.93 -0.39 0.54 16 33 H 0.08 0.71 7.86 -51.93 -0.41 0.30 16 34 H 0.08 1.11 7.94 -51.93 -0.41 0.70 16 35 H 0.06 0.49 4.79 -51.93 -0.25 0.24 16 36 H 0.07 0.70 7.83 -51.93 -0.41 0.29 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.11 0.91 6.18 -51.93 -0.32 0.59 16 39 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.35 5.29 8.17 -39.29 -0.32 4.97 16 44 H 0.08 1.45 8.05 -51.93 -0.42 1.04 16 45 H 0.04 0.69 7.44 -51.93 -0.39 0.30 16 46 H 0.39 9.61 7.90 -40.82 -0.32 9.29 16 47 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 383.14 15.07 5.77 5.77 Total: -1.00 -34.06 383.14 -7.23 -41.30 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: -7.27 Total: 13.39 kcal Atomic # 6 Polarization: 13.29 SS G_CDS: 0.92 Total: 14.21 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: -0.34 Total: -56.21 kcal Atomic # 8 Polarization: -33.11 SS G_CDS: -1.29 Total: -34.40 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.06 -7.23 -41.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755578721.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.131 kcal (2) G-P(sol) polarization free energy of solvation -34.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds