Wall clock time and date at job start Tue Mar 31 2020 04:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 109.47480 * 2 1 4 4 C 1.53004 * 109.46719 * 120.00427 * 2 1 3 5 5 N 1.46504 * 109.46772 * 174.99952 * 4 2 1 6 6 C 1.46494 * 119.99868 * 269.99592 * 5 4 2 7 7 C 1.34773 * 120.00081 * 89.99856 * 5 4 2 8 8 O 1.21283 * 120.00351 * 354.64705 * 7 5 4 9 9 C 1.50702 * 120.00158 * 174.64902 * 7 5 4 10 10 H 1.08999 * 109.52563 * 44.05925 * 9 7 5 11 11 C 1.53147 * 109.52150 * 283.86209 * 9 7 5 12 12 O 1.43074 * 109.14908 * 184.78020 * 11 9 7 13 13 C 1.43078 * 113.58898 * 57.95915 * 12 11 9 14 14 C 1.53147 * 109.14885 * 302.04098 * 13 12 11 15 15 O 1.43070 * 109.14689 * 55.31645 * 14 13 12 16 16 N 1.46903 * 109.46781 * 239.99855 * 2 1 3 17 17 C 1.46897 * 110.99545 * 85.00658 * 16 2 1 18 18 C 1.50711 * 109.46886 * 179.97438 * 17 16 2 19 19 O 1.21291 * 119.99589 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99975 * 179.97438 * 18 17 16 21 21 C 1.37096 * 119.99932 * 180.02562 * 20 18 17 22 22 H 1.07995 * 119.99978 * 359.97438 * 21 20 18 23 23 C 1.38951 * 119.99721 * 179.72159 * 21 20 18 24 24 N 1.31412 * 120.00261 * 0.27676 * 23 21 20 25 25 Si 1.86804 * 119.99774 * 180.27474 * 23 21 20 26 26 H 1.48504 * 109.47160 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47191 * 119.99858 * 25 23 21 28 28 H 1.48505 * 109.46878 * 240.00115 * 25 23 21 29 29 H 1.09000 * 109.47146 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47024 * 299.99877 * 1 2 3 31 31 H 1.08999 * 109.46660 * 59.99861 * 1 2 3 32 32 H 1.08998 * 109.47145 * 294.99563 * 4 2 1 33 33 H 1.08997 * 109.47699 * 55.00031 * 4 2 1 34 34 H 1.09005 * 109.47087 * 95.14905 * 6 5 4 35 35 H 1.08999 * 109.47691 * 215.14531 * 6 5 4 36 36 H 1.08998 * 109.47434 * 335.14986 * 6 5 4 37 37 H 1.08999 * 109.52465 * 304.69034 * 11 9 7 38 38 H 1.09001 * 109.52245 * 64.88424 * 11 9 7 39 39 H 1.09005 * 109.52161 * 182.14277 * 13 12 11 40 40 H 1.09001 * 109.58021 * 61.97554 * 13 12 11 41 41 H 1.08999 * 109.52465 * 295.40946 * 14 13 12 42 42 H 1.09004 * 109.57220 * 175.24921 * 14 13 12 43 43 H 1.00898 * 111.00136 * 321.04971 * 16 2 1 44 44 H 1.08994 * 109.47867 * 60.00073 * 17 16 2 45 45 H 1.09004 * 109.47196 * 299.98975 * 17 16 2 46 46 H 0.97000 * 119.99815 * 359.97438 * 20 18 17 47 47 H 0.97000 * 119.99509 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 1.2492 5 7 3.5000 -0.8265 1.1906 6 6 4.1257 -1.9921 0.5612 7 6 4.2675 0.1490 1.7156 8 8 3.7532 1.1581 2.1492 9 6 5.7649 -0.0141 1.7639 10 1 6.1189 -0.4124 0.8131 11 6 6.1386 -0.9770 2.8947 12 8 7.5637 -1.0397 3.0060 13 6 8.1754 0.2305 3.2498 14 6 7.8017 1.1934 2.1190 15 8 6.3767 1.2560 2.0078 16 7 2.0196 -0.6925 -1.1995 17 6 2.0825 0.2226 -2.3468 18 6 2.5885 -0.5215 -3.5558 19 8 2.8695 -1.6983 -3.4697 20 7 2.7287 0.1206 -4.7324 21 6 3.1885 -0.5565 -5.8323 22 1 3.4387 -1.6043 -5.7557 23 6 3.3275 0.1041 -7.0467 24 7 3.0235 1.3792 -7.1398 25 14 3.9467 -0.8203 -8.5473 26 1 4.2164 -2.2340 -8.1813 27 1 2.9175 -0.7741 -9.6167 28 1 5.1980 -0.1878 -9.0367 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 1.7516 -0.1585 2.1370 33 1 1.6053 -1.7199 1.2951 34 1 4.3631 -1.7606 -0.4772 35 1 5.0414 -2.2457 1.0953 36 1 3.4383 -2.8372 0.5971 37 1 5.7153 -0.6187 3.8331 38 1 5.7466 -1.9695 2.6725 39 1 9.2585 0.1125 3.2847 40 1 7.8216 0.6299 4.2002 41 1 8.2251 0.8352 1.1807 42 1 8.1939 2.1861 2.3402 43 1 1.4495 -1.4979 -1.4101 44 1 2.7589 1.0461 -2.1182 45 1 1.0871 0.6163 -2.5525 46 1 2.5036 1.0616 -4.8012 47 1 3.1209 1.8404 -7.9875 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755578721.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:46:37 Heat of formation + Delta-G solvation = -172.464359 kcal Electronic energy + Delta-G solvation = -29319.489957 eV Core-core repulsion = 25116.016217 eV Total energy + Delta-G solvation = -4203.473739 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.69892 -40.35202 -39.98561 -38.07077 -37.08797 -36.16406 -35.79685 -33.32698 -33.02834 -31.89760 -29.46227 -28.17796 -27.92961 -27.09312 -25.87647 -25.35835 -22.88604 -21.99387 -21.13919 -20.50059 -19.91201 -18.52964 -18.08884 -17.88213 -17.63352 -17.17091 -16.84759 -16.70320 -16.42228 -16.40433 -16.11594 -15.75483 -15.64980 -15.28226 -15.01767 -14.59714 -14.43276 -14.16107 -13.96541 -13.75207 -13.59818 -13.50821 -13.39478 -13.11485 -13.03031 -12.82542 -12.71690 -12.62139 -12.47030 -12.38246 -12.10533 -11.97011 -11.87756 -11.61101 -11.50715 -10.81002 -10.36646 -10.30909 -10.01745 -9.77358 -9.15899 -8.46775 -5.95674 1.36549 1.37455 1.41736 1.56095 1.75561 2.04722 2.28523 2.62343 2.79637 2.91574 3.20503 3.37225 3.48267 3.55688 3.79797 3.91609 3.94434 4.08313 4.11791 4.20933 4.26573 4.30114 4.33944 4.42371 4.46274 4.51498 4.54688 4.60343 4.69226 4.75717 4.77543 4.81636 4.91400 4.98932 5.20550 5.22498 5.40944 5.52460 5.83480 5.84489 5.88570 6.07522 6.34638 6.48599 6.58885 7.07037 7.12050 7.55793 8.09726 8.71052 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.011950 B = 0.002965 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.445549 B = 9442.274385 C =10824.166391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.067 3.933 3 H 0.057 0.943 4 C 0.131 3.869 5 N -0.585 5.585 6 C 0.082 3.918 7 C 0.518 3.482 8 O -0.568 6.568 9 C 0.038 3.962 10 H 0.094 0.906 11 C 0.046 3.954 12 O -0.384 6.384 13 C 0.020 3.980 14 C 0.015 3.985 15 O -0.386 6.386 16 N -0.659 5.659 17 C 0.068 3.932 18 C 0.443 3.557 19 O -0.613 6.613 20 N -0.576 5.576 21 C -0.330 4.330 22 H 0.082 0.918 23 C -0.016 4.016 24 N -0.924 5.924 25 Si 0.994 3.006 26 H -0.270 1.270 27 H -0.272 1.272 28 H -0.273 1.273 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.050 0.950 32 H 0.084 0.916 33 H 0.108 0.892 34 H 0.048 0.952 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.065 0.935 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.128 0.872 43 H 0.348 0.652 44 H 0.082 0.918 45 H 0.061 0.939 46 H 0.393 0.607 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.568 -3.598 21.165 21.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.043 4.043 3 H 0.075 0.925 4 C 0.008 3.992 5 N -0.317 5.317 6 C -0.060 4.060 7 C 0.305 3.695 8 O -0.447 6.447 9 C -0.024 4.024 10 H 0.112 0.888 11 C -0.032 4.032 12 O -0.302 6.302 13 C -0.056 4.056 14 C -0.061 4.061 15 O -0.305 6.305 16 N -0.292 5.292 17 C -0.065 4.065 18 C 0.231 3.769 19 O -0.499 6.499 20 N -0.214 5.214 21 C -0.460 4.460 22 H 0.100 0.900 23 C -0.215 4.215 24 N -0.565 5.565 25 Si 0.818 3.182 26 H -0.194 1.194 27 H -0.197 1.197 28 H -0.198 1.198 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.069 0.931 32 H 0.103 0.897 33 H 0.126 0.874 34 H 0.067 0.933 35 H 0.099 0.901 36 H 0.113 0.887 37 H 0.083 0.917 38 H 0.151 0.849 39 H 0.153 0.847 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.146 0.854 43 H 0.168 0.832 44 H 0.101 0.899 45 H 0.079 0.921 46 H 0.227 0.773 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.165 -3.667 21.451 22.157 hybrid contribution -0.773 0.746 -1.481 1.829 sum 3.392 -2.921 19.970 20.466 Atomic orbital electron populations 1.22367 0.94758 1.03334 1.02771 1.22016 0.94171 0.97561 0.90599 0.92454 1.21663 0.78378 1.02552 0.96575 1.47558 1.06809 1.21316 1.55970 1.22009 0.99070 0.87157 0.97735 1.20221 0.88518 0.82957 0.77802 1.90669 1.75224 1.29332 1.49442 1.22644 0.91352 0.87092 1.01282 0.88829 1.23167 0.82487 1.00929 0.96589 1.88110 1.18899 1.30349 1.92856 1.23488 1.00829 0.83664 0.97619 1.23609 0.79797 1.03167 0.99510 1.88165 1.21333 1.27747 1.93214 1.60155 1.58138 1.08778 1.02104 1.21458 1.00366 0.95286 0.89365 1.20702 0.83385 0.88012 0.84827 1.90472 1.56342 1.17766 1.85337 1.41973 1.58437 1.12563 1.08387 1.19720 1.41912 0.96043 0.88275 0.89960 1.26077 0.97295 0.96604 1.01537 1.69695 1.48891 1.09883 1.28003 0.84855 0.78066 0.78154 0.77172 1.19436 1.19709 1.19796 0.90698 0.90600 0.93108 0.89734 0.87434 0.93285 0.90112 0.88718 0.91667 0.84855 0.84709 0.91481 0.91582 0.85410 0.83186 0.89936 0.92118 0.77318 0.91396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.27 9.16 71.98 0.66 -2.61 16 2 C 0.07 1.62 2.89 44.92 0.13 1.75 16 3 H 0.06 1.69 7.80 -2.39 -0.02 1.67 16 4 C 0.13 2.70 5.15 86.38 0.44 3.14 16 5 N -0.59 -13.54 2.73 -846.76 -2.31 -15.85 16 6 C 0.08 1.64 9.17 127.77 1.17 2.81 16 7 C 0.52 14.64 6.95 87.66 0.61 15.25 16 8 O -0.57 -20.40 16.21 15.46 0.25 -20.15 16 9 C 0.04 0.92 2.41 29.90 0.07 0.99 16 10 H 0.09 2.24 7.31 -2.39 -0.02 2.23 16 11 C 0.05 0.85 6.09 72.03 0.44 1.29 16 12 O -0.38 -7.34 10.85 -136.00 -1.48 -8.81 16 13 C 0.02 0.30 7.05 72.03 0.51 0.81 16 14 C 0.02 0.28 7.05 72.03 0.51 0.79 16 15 O -0.39 -10.64 10.07 -123.12 -1.24 -11.88 16 16 N -0.66 -19.35 4.72 -495.56 -2.34 -21.69 16 17 C 0.07 2.39 5.97 85.56 0.51 2.90 16 18 C 0.44 20.76 7.82 87.66 0.69 21.45 16 19 O -0.61 -32.28 15.78 -3.06 -0.05 -32.32 16 20 N -0.58 -29.72 5.29 -306.98 -1.62 -31.35 16 21 C -0.33 -18.65 9.68 84.04 0.81 -17.84 16 22 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 23 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16 24 N -0.92 -50.46 13.05 21.66 0.28 -50.17 16 25 Si 0.99 42.84 29.55 68.60 2.03 44.86 16 26 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 27 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 28 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 29 H 0.07 1.20 8.13 -2.39 -0.02 1.18 16 30 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 31 H 0.05 1.06 7.45 -2.39 -0.02 1.04 16 32 H 0.08 1.78 7.50 -2.39 -0.02 1.76 16 33 H 0.11 1.61 7.86 -2.39 -0.02 1.59 16 34 H 0.05 1.33 7.94 -2.38 -0.02 1.31 16 35 H 0.08 1.22 4.79 -2.39 -0.01 1.21 16 36 H 0.09 1.53 7.83 -2.39 -0.02 1.51 16 37 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.13 1.85 6.18 -2.39 -0.01 1.83 16 39 H 0.14 1.23 8.14 -2.38 -0.02 1.21 16 40 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.13 1.76 8.14 -2.38 -0.02 1.74 16 43 H 0.35 10.19 8.17 -89.70 -0.73 9.46 16 44 H 0.08 2.93 8.05 -2.39 -0.02 2.91 16 45 H 0.06 1.93 7.44 -2.39 -0.02 1.91 16 46 H 0.39 19.69 7.90 -92.71 -0.73 18.96 16 47 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -74.84 383.14 0.08 -74.76 By element: Atomic # 1 Polarization: 42.73 SS G_CDS: -0.46 Total: 42.27 kcal Atomic # 6 Polarization: 23.32 SS G_CDS: 7.02 Total: 30.34 kcal Atomic # 7 Polarization: -113.06 SS G_CDS: -5.99 Total: -119.05 kcal Atomic # 8 Polarization: -70.66 SS G_CDS: -2.51 Total: -73.17 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Total: -74.84 0.08 -74.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755578721.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.706 kcal (2) G-P(sol) polarization free energy of solvation -74.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds