Wall clock time and date at job start Tue Mar 31 2020 05:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47468 * 2 1 4 4 C 1.53002 * 109.46915 * 239.99826 * 2 1 3 5 5 N 1.46903 * 109.46924 * 65.32088 * 4 2 1 6 6 C 1.47018 * 110.99446 * 199.38466 * 5 4 2 7 7 C 1.53107 * 109.25455 * 177.61133 * 6 5 4 8 8 O 1.43009 * 109.25858 * 56.84412 * 7 6 5 9 9 C 1.43018 * 113.74347 * 301.33203 * 8 7 6 10 10 C 1.47012 * 111.00190 * 75.75397 * 5 4 2 11 11 C 1.50702 * 109.47210 * 120.00051 * 2 1 3 12 12 O 1.21271 * 120.00041 * 119.99587 * 11 2 1 13 13 N 1.34777 * 119.99736 * 300.00147 * 11 2 1 14 14 C 1.46505 * 120.00006 * 359.97438 * 13 11 2 15 15 C 1.46499 * 120.00086 * 180.02562 * 13 11 2 16 16 C 1.52996 * 109.47186 * 89.99547 * 15 13 11 17 17 H 1.09007 * 109.47336 * 305.00195 * 16 15 13 18 18 O 1.42899 * 109.47428 * 65.00073 * 16 15 13 19 19 C 1.53003 * 109.47198 * 185.00220 * 16 15 13 20 20 N 1.46492 * 109.47194 * 179.97438 * 19 16 15 21 21 C 1.36944 * 120.00137 * 180.02562 * 20 19 16 22 22 H 1.08002 * 119.99266 * 0.02562 * 21 20 19 23 23 C 1.38811 * 120.00150 * 180.02562 * 21 20 19 24 24 N 1.31616 * 120.00271 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99950 * 180.02562 * 23 21 20 26 26 H 1.48507 * 109.47136 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47505 * 119.99313 * 25 23 21 28 28 H 1.48501 * 109.46903 * 239.99709 * 25 23 21 29 29 H 1.09008 * 109.46792 * 67.06666 * 1 2 3 30 30 H 1.08995 * 109.47151 * 187.06996 * 1 2 3 31 31 H 1.09000 * 109.47070 * 307.07251 * 1 2 3 32 32 H 1.09003 * 109.47173 * 185.32076 * 4 2 1 33 33 H 1.08998 * 109.47427 * 305.32243 * 4 2 1 34 34 H 1.08996 * 109.50724 * 297.53712 * 6 5 4 35 35 H 1.08994 * 109.51068 * 57.67539 * 6 5 4 36 36 H 1.09005 * 109.50172 * 296.91117 * 7 6 5 37 37 H 1.08993 * 109.54214 * 176.80763 * 7 6 5 38 38 H 1.09001 * 109.50498 * 298.73402 * 9 8 7 39 39 H 1.09003 * 109.53961 * 178.62563 * 9 8 7 40 40 H 1.09004 * 109.50422 * 302.32621 * 10 5 4 41 41 H 1.08998 * 109.50865 * 62.44871 * 10 5 4 42 42 H 1.08998 * 109.46808 * 90.00368 * 14 13 11 43 43 H 1.09000 * 109.46644 * 210.00289 * 14 13 11 44 44 H 1.09002 * 109.47160 * 330.00058 * 14 13 11 45 45 H 1.08994 * 109.47108 * 209.99601 * 15 13 11 46 46 H 1.09003 * 109.46626 * 329.99688 * 15 13 11 47 47 H 0.96705 * 113.99767 * 60.00084 * 18 16 15 48 48 H 1.08998 * 109.47035 * 300.00470 * 19 16 15 49 49 H 1.09000 * 109.47037 * 59.99913 * 19 16 15 50 50 H 0.96997 * 120.00608 * 0.02562 * 20 19 16 51 51 H 0.96996 * 120.00064 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 1.6579 0.0414 -2.4452 6 6 1.7074 -0.8039 -3.6471 7 6 1.2459 0.0120 -4.8576 8 8 2.0655 1.1774 -4.9811 9 6 2.0405 2.0238 -3.8285 10 6 2.5101 1.2282 -2.6078 11 6 2.0324 -0.7104 1.2305 12 8 2.7295 -1.6965 1.1192 13 7 1.7067 -0.2499 2.4546 14 6 0.8649 0.9415 2.5889 15 6 2.1955 -0.9402 3.6508 16 6 3.5431 -0.3472 4.0669 17 1 4.2352 -0.3922 3.2258 18 8 3.3628 1.0139 4.4630 19 6 4.1127 -1.1484 5.2393 20 7 5.4033 -0.5811 5.6373 21 6 6.1056 -1.1373 6.6730 22 1 5.7081 -1.9945 7.1961 23 6 7.3283 -0.5993 7.0505 24 7 7.8129 0.4450 6.4128 25 14 8.2867 -1.3585 8.4629 26 1 7.5310 -2.5144 9.0090 27 1 9.6102 -1.8194 7.9719 28 1 8.4803 -0.3451 9.5309 29 1 -0.3633 0.4005 -0.9465 30 1 -0.3633 -1.0198 0.1265 31 1 -0.3633 0.6195 0.8199 32 1 3.1258 -0.8046 -1.2029 33 1 1.6009 -1.7177 -1.2982 34 1 2.7290 -1.1480 -3.8083 35 1 1.0498 -1.6631 -3.5152 36 1 0.2066 0.3108 -4.7203 37 1 1.3345 -0.5926 -5.7601 38 1 1.0244 2.3811 -3.6613 39 1 2.7040 2.8741 -3.9862 40 1 2.4385 1.8524 -1.7170 41 1 3.5445 0.9166 -2.7522 42 1 -0.1832 0.6439 2.6221 43 1 1.1228 1.4667 3.5086 44 1 1.0288 1.6003 1.7361 45 1 1.4777 -0.8149 4.4613 46 1 2.3170 -2.0014 3.4336 47 1 2.7577 1.1297 5.2084 48 1 3.4207 -1.1035 6.0803 49 1 4.2503 -2.1866 4.9371 50 1 5.7605 0.1886 5.1674 51 1 8.6671 0.8211 6.6768 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755796508.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:46 Heat of formation + Delta-G solvation = -106.032556 kcal Electronic energy + Delta-G solvation = -29245.497849 eV Core-core repulsion = 25180.737903 eV Total energy + Delta-G solvation = -4064.759946 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.52149 -39.68505 -37.62510 -36.42604 -35.33247 -34.00791 -33.34625 -31.54650 -31.30003 -29.52349 -28.15184 -26.95896 -25.82323 -25.04623 -24.39675 -23.15291 -21.84807 -21.16284 -20.62848 -19.07730 -17.58800 -17.14837 -16.59376 -16.51288 -16.37608 -16.02612 -15.69656 -15.41827 -15.32177 -15.17255 -14.59326 -14.44905 -14.25334 -14.09666 -13.68030 -13.37318 -13.13223 -12.95610 -12.88380 -12.60318 -12.48624 -12.33240 -12.23860 -12.04431 -11.91282 -11.73571 -11.49225 -11.30982 -11.10035 -10.92552 -10.86864 -10.82461 -10.66944 -10.14461 -10.04351 -9.92696 -9.73919 -9.56582 -8.88445 -8.76120 -8.49892 -6.90016 -5.73221 -3.02604 2.59299 2.84108 3.40762 3.44598 3.49628 3.52333 3.55127 4.37581 4.43101 4.53891 4.57138 4.63195 4.71866 4.75163 4.78558 4.86605 4.93645 4.94289 5.03469 5.11255 5.18009 5.23148 5.27535 5.31477 5.37931 5.42826 5.45963 5.49910 5.55362 5.57650 5.65037 5.68164 5.69833 5.76106 5.81951 5.98513 6.02368 6.25101 6.45532 6.55802 6.56823 6.57386 6.76316 6.76947 7.30688 7.70851 8.02275 8.13371 8.45045 9.56420 10.14608 10.50420 11.49307 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.018897 B = 0.002176 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.348999 B =12866.586425 C =13491.640197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.102 4.102 3 H 0.096 0.904 4 C 0.074 3.926 5 N -0.535 5.535 6 C 0.018 3.982 7 C 0.065 3.935 8 O -0.387 6.387 9 C 0.065 3.935 10 C 0.013 3.987 11 C 0.516 3.484 12 O -0.539 6.539 13 N -0.605 5.605 14 C 0.079 3.921 15 C 0.086 3.914 16 C 0.087 3.913 17 H 0.099 0.901 18 O -0.551 6.551 19 C 0.127 3.873 20 N -0.725 5.725 21 C -0.241 4.241 22 H 0.070 0.930 23 C -0.014 4.014 24 N -0.930 5.930 25 Si 0.908 3.092 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.291 1.291 29 H 0.077 0.923 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.081 0.919 34 H 0.045 0.955 35 H 0.087 0.913 36 H 0.059 0.941 37 H 0.097 0.903 38 H 0.059 0.941 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.046 0.954 42 H 0.055 0.945 43 H 0.078 0.922 44 H 0.071 0.929 45 H 0.080 0.920 46 H 0.093 0.907 47 H 0.366 0.634 48 H 0.019 0.981 49 H 0.027 0.973 50 H 0.389 0.611 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.357 2.575 -19.879 29.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.123 4.123 3 H 0.114 0.886 4 C -0.054 4.054 5 N -0.260 5.260 6 C -0.110 4.110 7 C -0.012 4.012 8 O -0.305 6.305 9 C -0.012 4.012 10 C -0.116 4.116 11 C 0.303 3.697 12 O -0.416 6.416 13 N -0.337 5.337 14 C -0.064 4.064 15 C -0.037 4.037 16 C 0.027 3.973 17 H 0.117 0.883 18 O -0.355 6.355 19 C -0.002 4.002 20 N -0.370 5.370 21 C -0.372 4.372 22 H 0.088 0.912 23 C -0.210 4.210 24 N -0.578 5.578 25 Si 0.739 3.261 26 H -0.206 1.206 27 H -0.218 1.218 28 H -0.219 1.219 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.063 0.937 35 H 0.105 0.895 36 H 0.077 0.923 37 H 0.115 0.885 38 H 0.078 0.922 39 H 0.116 0.884 40 H 0.106 0.894 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.096 0.904 44 H 0.090 0.910 45 H 0.098 0.902 46 H 0.111 0.889 47 H 0.213 0.787 48 H 0.037 0.963 49 H 0.044 0.956 50 H 0.223 0.777 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -20.902 2.238 -20.400 29.293 hybrid contribution 1.057 -0.591 1.429 1.873 sum -19.845 1.648 -18.971 27.503 Atomic orbital electron populations 1.21910 0.92317 1.02450 1.03521 1.21176 0.98383 1.00647 0.92135 0.88620 1.21870 0.99416 0.96529 0.87601 1.62139 1.53310 1.07869 1.02709 1.22789 1.01200 0.96522 0.90531 1.22660 0.94479 0.86639 0.97454 1.87993 1.68633 1.35214 1.38699 1.22664 1.01561 0.92593 0.84389 1.22873 0.95577 0.93372 0.99736 1.20623 0.79946 0.84570 0.84561 1.90720 1.37790 1.26644 1.86480 1.47677 1.51207 1.29184 1.05661 1.21976 0.93619 0.87076 1.03681 1.22219 0.96417 0.98431 0.86639 1.22535 0.94761 0.82159 0.97876 0.88327 1.86618 1.69574 1.25567 1.53720 1.21215 0.89622 0.95809 0.93590 1.42248 1.18191 1.36859 1.39722 1.19273 1.00069 1.10042 1.07864 0.91210 1.24768 0.98031 0.98309 0.99923 1.69693 1.20351 1.24799 1.42997 0.86109 0.79964 0.78203 0.81853 1.20573 1.21839 1.21857 0.90385 0.92731 0.91619 0.93208 0.90021 0.93719 0.89489 0.92265 0.88504 0.92230 0.88411 0.89441 0.93593 0.92638 0.90376 0.91007 0.90188 0.88918 0.78738 0.96291 0.95557 0.77692 0.93562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 8.72 37.16 0.32 -0.75 16 2 C -0.10 -0.97 1.98 -91.77 -0.18 -1.16 16 3 H 0.10 0.85 6.00 -51.93 -0.31 0.54 16 4 C 0.07 0.75 3.74 -3.82 -0.01 0.73 16 5 N -0.54 -4.53 4.01 -234.30 -0.94 -5.47 16 6 C 0.02 0.14 5.60 -3.70 -0.02 0.12 16 7 C 0.06 0.46 7.01 37.21 0.26 0.72 16 8 O -0.39 -3.60 10.83 -35.23 -0.38 -3.98 16 9 C 0.06 0.48 7.01 37.20 0.26 0.74 16 10 C 0.01 0.10 5.47 -3.72 -0.02 0.08 16 11 C 0.52 6.79 7.07 -10.98 -0.08 6.71 16 12 O -0.54 -9.29 15.49 5.57 0.09 -9.20 16 13 N -0.60 -7.10 2.84 -181.57 -0.52 -7.61 16 14 C 0.08 0.65 8.61 59.85 0.52 1.16 16 15 C 0.09 1.13 5.07 -4.04 -0.02 1.11 16 16 C 0.09 1.47 3.30 -26.73 -0.09 1.38 16 17 H 0.10 1.97 8.14 -51.93 -0.42 1.55 16 18 O -0.55 -9.07 11.91 -35.23 -0.42 -9.49 16 19 C 0.13 2.58 5.92 -4.04 -0.02 2.56 16 20 N -0.73 -19.18 5.49 -59.91 -0.33 -19.51 16 21 C -0.24 -6.98 9.99 -15.06 -0.15 -7.13 16 22 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 23 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 24 N -0.93 -29.12 13.06 55.49 0.72 -28.40 16 25 Si 0.91 22.91 29.55 -169.99 -5.02 17.89 16 26 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 27 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 28 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 29 H 0.08 0.56 7.58 -51.92 -0.39 0.16 16 30 H 0.05 0.44 8.13 -51.93 -0.42 0.02 16 31 H 0.07 0.41 4.75 -51.93 -0.25 0.16 16 32 H 0.05 0.61 7.79 -51.93 -0.40 0.21 16 33 H 0.08 0.86 7.86 -51.93 -0.41 0.45 16 34 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.09 0.58 8.02 -51.93 -0.42 0.16 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 0.65 6.73 -51.93 -0.35 0.30 16 41 H 0.05 0.44 8.13 -51.93 -0.42 0.02 16 42 H 0.06 0.35 7.11 -51.93 -0.37 -0.02 16 43 H 0.08 0.64 7.10 -51.93 -0.37 0.27 16 44 H 0.07 0.51 5.93 -51.93 -0.31 0.20 16 45 H 0.08 0.84 8.07 -51.93 -0.42 0.42 16 46 H 0.09 1.33 7.42 -51.93 -0.39 0.95 16 47 H 0.37 4.75 9.04 45.56 0.41 5.16 16 48 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 50 H 0.39 11.09 7.54 -40.82 -0.31 10.78 16 51 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 397.98 15.07 6.00 6.00 Total: -1.00 -35.73 397.98 -8.18 -43.91 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -8.05 Total: 10.10 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: 0.67 Total: 5.77 kcal Atomic # 7 Polarization: -59.93 SS G_CDS: -1.06 Total: -61.00 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.71 Total: -22.67 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.73 -8.18 -43.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755796508.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.123 kcal (2) G-P(sol) polarization free energy of solvation -35.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds