Wall clock time and date at job start Tue Mar 31 2020 05:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47070 * 2 1 4 4 C 1.52989 * 109.47467 * 120.00999 * 2 1 3 5 5 N 1.46898 * 109.47228 * 294.99685 * 4 2 1 6 6 C 1.47015 * 111.00361 * 293.63770 * 5 4 2 7 7 C 1.53095 * 109.26148 * 177.60286 * 6 5 4 8 8 O 1.43015 * 109.25778 * 56.85232 * 7 6 5 9 9 C 1.43022 * 113.73693 * 301.32852 * 8 7 6 10 10 C 1.47009 * 111.00325 * 170.00128 * 5 4 2 11 11 C 1.50708 * 109.46822 * 240.01132 * 2 1 3 12 12 O 1.21286 * 119.99666 * 239.99600 * 11 2 1 13 13 N 1.34779 * 120.00208 * 59.99744 * 11 2 1 14 14 C 1.46498 * 119.99843 * 359.97438 * 13 11 2 15 15 C 1.46491 * 119.99842 * 180.02562 * 13 11 2 16 16 C 1.53003 * 109.47329 * 269.99585 * 15 13 11 17 17 H 1.09008 * 109.46613 * 59.99822 * 16 15 13 18 18 O 1.42902 * 109.47069 * 300.00453 * 16 15 13 19 19 C 1.52996 * 109.47530 * 179.97438 * 16 15 13 20 20 N 1.46498 * 109.47059 * 184.99929 * 19 16 15 21 21 C 1.36943 * 119.99752 * 179.72430 * 20 19 16 22 22 H 1.08002 * 119.99793 * 0.27665 * 21 20 19 23 23 C 1.38811 * 120.00012 * 180.27737 * 21 20 19 24 24 N 1.31611 * 120.00081 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99814 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47483 * 90.00178 * 25 23 21 27 27 H 1.48498 * 109.47011 * 210.00042 * 25 23 21 28 28 H 1.48502 * 109.47495 * 329.99664 * 25 23 21 29 29 H 1.09001 * 109.46747 * 299.98734 * 1 2 3 30 30 H 1.09002 * 109.47904 * 59.99299 * 1 2 3 31 31 H 1.09004 * 109.46751 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47785 * 54.99733 * 4 2 1 33 33 H 1.09001 * 109.47388 * 175.00382 * 4 2 1 34 34 H 1.09001 * 109.50537 * 297.54445 * 6 5 4 35 35 H 1.09006 * 109.50527 * 57.66685 * 6 5 4 36 36 H 1.08998 * 109.51101 * 296.91621 * 7 6 5 37 37 H 1.09002 * 109.53974 * 176.80300 * 7 6 5 38 38 H 1.09000 * 109.50638 * 298.73862 * 9 8 7 39 39 H 1.08996 * 109.54138 * 178.63163 * 9 8 7 40 40 H 1.08997 * 109.50669 * 302.32682 * 10 5 4 41 41 H 1.08997 * 109.50821 * 62.46295 * 10 5 4 42 42 H 1.08998 * 109.47402 * 269.99841 * 14 13 11 43 43 H 1.09005 * 109.47458 * 30.00427 * 14 13 11 44 44 H 1.09000 * 109.46750 * 150.00107 * 14 13 11 45 45 H 1.09000 * 109.47563 * 149.99583 * 15 13 11 46 46 H 1.09002 * 109.47768 * 29.99825 * 15 13 11 47 47 H 0.96696 * 113.99765 * 299.99828 * 18 16 15 48 48 H 1.09004 * 109.47066 * 65.00196 * 19 16 15 49 49 H 1.08994 * 109.46974 * 305.00344 * 19 16 15 50 50 H 0.97001 * 120.00384 * 0.02562 * 20 19 16 51 51 H 0.97008 * 120.00329 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2490 5 7 1.6515 0.0371 2.4455 6 6 2.3405 1.3349 2.4935 7 6 1.8628 2.1152 3.7210 8 8 2.0963 1.3347 4.8963 9 6 1.4395 0.0642 4.8837 10 6 1.9129 -0.7368 3.6678 11 6 2.0323 -0.7102 -1.2307 12 8 2.7296 -1.6963 -1.1196 13 7 1.7066 -0.2496 -2.4547 14 6 0.8639 0.9412 -2.5889 15 6 2.1944 -0.9403 -3.6509 16 6 3.5424 -0.3484 -4.0677 17 1 4.2605 -0.4740 -3.2572 18 8 3.3840 1.0431 -4.3523 19 6 4.0522 -1.0702 -5.3166 20 7 5.3952 -0.5866 -5.6461 21 6 6.0600 -1.0965 -6.7293 22 1 5.5923 -1.8519 -7.3433 23 6 7.3349 -0.6425 -7.0381 24 7 7.9735 -1.1322 -8.0795 25 14 8.1440 0.6636 -5.9756 26 1 8.9107 0.0094 -4.8850 27 1 9.0649 1.4783 -6.8082 28 1 7.0997 1.5414 -5.3890 29 1 -0.3633 0.5136 0.8901 30 1 -0.3635 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6055 -1.7200 1.2949 33 1 3.1264 -0.7995 1.2053 34 1 3.4164 1.1736 2.5607 35 1 2.1125 1.9015 1.5906 36 1 0.7969 2.3232 3.6280 37 1 2.4120 3.0541 3.7925 38 1 0.3613 0.2125 4.8244 39 1 1.6823 -0.4808 5.7958 40 1 1.3728 -1.6824 3.6223 41 1 2.9819 -0.9312 3.7539 42 1 -0.1839 0.6429 -2.6224 43 1 1.0271 1.5999 -1.7358 44 1 1.1216 1.4669 -3.5083 45 1 1.4764 -0.8147 -4.4613 46 1 2.3152 -2.0016 -3.4339 47 1 2.7577 1.2299 -5.0649 48 1 3.3796 -0.8714 -6.1511 49 1 4.0886 -2.1428 -5.1269 50 1 5.8154 0.0916 -5.0944 51 1 8.8643 -0.8147 -8.2956 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755796509.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:51 Heat of formation + Delta-G solvation = -100.707859 kcal Electronic energy + Delta-G solvation = -29385.343321 eV Core-core repulsion = 25320.814271 eV Total energy + Delta-G solvation = -4064.529050 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.62613 -39.74465 -37.78427 -36.51224 -35.43887 -34.19759 -33.40148 -31.59389 -31.48006 -29.86506 -28.26803 -27.10422 -26.03175 -25.12751 -24.46131 -22.98963 -21.76109 -21.31473 -20.64963 -19.15990 -17.72930 -17.68679 -16.65265 -16.55813 -16.40418 -16.16089 -15.76338 -15.48922 -15.39728 -15.26800 -14.72469 -14.47208 -14.30703 -14.17635 -13.80644 -13.35016 -13.27704 -13.15370 -12.94214 -12.72201 -12.50161 -12.39948 -12.31187 -12.18154 -11.99092 -11.78787 -11.62093 -11.37160 -11.24899 -11.15593 -10.91838 -10.86846 -10.82430 -10.22727 -10.08335 -10.01006 -9.70831 -9.57014 -8.90865 -8.80928 -8.60714 -7.23040 -5.76118 -3.11600 2.50586 2.75493 3.35215 3.41708 3.47931 3.48205 3.49978 4.29187 4.35032 4.47871 4.54944 4.57954 4.62222 4.64099 4.73868 4.81081 4.84462 4.87671 4.88947 5.02427 5.07757 5.15468 5.20794 5.22851 5.34295 5.37841 5.38660 5.43599 5.47712 5.50543 5.54252 5.58939 5.62399 5.68391 5.72916 5.83097 5.87769 5.93946 6.33370 6.45233 6.51169 6.51523 6.61478 6.72372 7.21377 7.83885 7.99969 8.04662 8.42717 9.22381 9.94872 10.14982 11.42025 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.016664 B = 0.002414 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.852967 B =11595.744958 C =12387.870275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 H 0.096 0.904 4 C 0.074 3.926 5 N -0.534 5.534 6 C 0.011 3.989 7 C 0.065 3.935 8 O -0.387 6.387 9 C 0.065 3.935 10 C 0.018 3.982 11 C 0.516 3.484 12 O -0.539 6.539 13 N -0.605 5.605 14 C 0.080 3.920 15 C 0.086 3.914 16 C 0.082 3.918 17 H 0.099 0.901 18 O -0.554 6.554 19 C 0.131 3.869 20 N -0.749 5.749 21 C -0.246 4.246 22 H 0.089 0.911 23 C 0.005 3.995 24 N -0.934 5.934 25 Si 0.883 3.117 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.273 1.273 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.047 0.953 34 H 0.045 0.955 35 H 0.088 0.912 36 H 0.060 0.940 37 H 0.098 0.902 38 H 0.059 0.941 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.045 0.955 42 H 0.057 0.943 43 H 0.071 0.929 44 H 0.077 0.923 45 H 0.082 0.918 46 H 0.095 0.905 47 H 0.368 0.632 48 H 0.029 0.971 49 H 0.036 0.964 50 H 0.365 0.635 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.936 6.144 23.700 32.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.126 4.126 3 H 0.114 0.886 4 C -0.053 4.053 5 N -0.260 5.260 6 C -0.117 4.117 7 C -0.012 4.012 8 O -0.305 6.305 9 C -0.012 4.012 10 C -0.111 4.111 11 C 0.304 3.696 12 O -0.415 6.415 13 N -0.337 5.337 14 C -0.063 4.063 15 C -0.037 4.037 16 C 0.022 3.978 17 H 0.117 0.883 18 O -0.359 6.359 19 C 0.003 3.997 20 N -0.395 5.395 21 C -0.376 4.376 22 H 0.107 0.893 23 C -0.191 4.191 24 N -0.582 5.582 25 Si 0.714 3.286 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.199 1.199 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.106 0.894 36 H 0.078 0.922 37 H 0.116 0.884 38 H 0.078 0.922 39 H 0.115 0.885 40 H 0.106 0.894 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.090 0.910 44 H 0.095 0.905 45 H 0.100 0.900 46 H 0.113 0.887 47 H 0.215 0.785 48 H 0.046 0.954 49 H 0.053 0.947 50 H 0.199 0.801 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.473 5.684 24.162 32.821 hybrid contribution 1.065 0.567 -0.190 1.222 sum -20.408 6.251 23.972 32.097 Atomic orbital electron populations 1.21930 0.92164 1.02870 1.03323 1.21227 0.98537 1.00599 0.92256 0.88590 1.21875 0.99177 0.96879 0.87415 1.62186 1.57720 1.03928 1.02139 1.22882 0.97246 0.91703 0.99896 1.22660 1.00897 0.93866 0.83775 1.87998 1.73078 1.29463 1.39986 1.22662 0.96936 0.84143 0.97484 1.22776 1.00390 0.97658 0.90239 1.20611 0.79945 0.84549 0.84532 1.90727 1.37771 1.26572 1.86464 1.47653 1.51211 1.29219 1.05646 1.21977 0.93670 0.87070 1.03598 1.22187 0.96254 0.98551 0.86714 1.22609 0.95528 0.81426 0.98273 0.88266 1.86600 1.67490 1.23808 1.57981 1.21197 0.88184 0.96846 0.93478 1.42587 1.14674 1.48405 1.33879 1.19049 0.97476 1.18204 1.02861 0.89284 1.24661 0.96953 0.99670 0.97786 1.69704 1.13956 1.46093 1.28428 0.86544 0.79428 0.82444 0.80228 1.21105 1.21723 1.19919 0.90543 0.91512 0.92496 0.89789 0.93498 0.93658 0.89401 0.92221 0.88437 0.92232 0.88453 0.89437 0.93707 0.92471 0.91016 0.90479 0.89973 0.88707 0.78539 0.95361 0.94655 0.80147 0.93048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 8.71 37.16 0.32 -0.68 16 2 C -0.10 -0.94 1.85 -91.77 -0.17 -1.11 16 3 H 0.10 0.78 5.56 -51.93 -0.29 0.50 16 4 C 0.07 0.72 3.69 -3.83 -0.01 0.71 16 5 N -0.53 -4.33 4.18 -234.32 -0.98 -5.31 16 6 C 0.01 0.08 5.44 -3.71 -0.02 0.06 16 7 C 0.07 0.46 7.01 37.21 0.26 0.72 16 8 O -0.39 -3.48 10.83 -35.23 -0.38 -3.87 16 9 C 0.06 0.44 7.01 37.21 0.26 0.70 16 10 C 0.02 0.13 5.64 -3.71 -0.02 0.11 16 11 C 0.52 6.43 7.08 -10.98 -0.08 6.35 16 12 O -0.54 -8.91 15.50 5.55 0.09 -8.82 16 13 N -0.60 -6.59 2.79 -181.57 -0.51 -7.09 16 14 C 0.08 0.58 8.54 59.85 0.51 1.09 16 15 C 0.09 1.05 5.10 -4.05 -0.02 1.03 16 16 C 0.08 1.28 3.27 -26.73 -0.09 1.20 16 17 H 0.10 1.83 8.14 -51.92 -0.42 1.41 16 18 O -0.55 -8.30 12.01 -35.23 -0.42 -8.72 16 19 C 0.13 2.52 5.90 -4.04 -0.02 2.50 16 20 N -0.75 -18.52 5.35 -59.91 -0.32 -18.84 16 21 C -0.25 -7.17 10.47 -15.06 -0.16 -7.33 16 22 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 23 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 24 N -0.93 -29.95 13.97 55.49 0.78 -29.17 16 25 Si 0.88 23.02 27.74 -169.99 -4.71 18.31 16 26 H -0.28 -7.40 7.11 56.52 0.40 -7.00 16 27 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 28 H -0.27 -6.85 6.52 56.52 0.37 -6.48 16 29 H 0.08 0.50 7.75 -51.93 -0.40 0.09 16 30 H 0.07 0.38 4.53 -51.93 -0.24 0.15 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.85 8.04 -51.93 -0.42 0.44 16 33 H 0.05 0.55 7.93 -51.93 -0.41 0.14 16 34 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.09 0.59 6.29 -51.93 -0.33 0.26 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.09 0.56 8.09 -51.93 -0.42 0.14 16 41 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 0.32 6.95 -51.93 -0.36 -0.04 16 43 H 0.07 0.45 6.01 -51.93 -0.31 0.14 16 44 H 0.08 0.54 6.88 -51.93 -0.36 0.18 16 45 H 0.08 0.79 8.07 -51.93 -0.42 0.37 16 46 H 0.09 1.29 7.42 -51.93 -0.39 0.90 16 47 H 0.37 4.18 8.79 45.56 0.40 4.58 16 48 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 50 H 0.37 9.11 5.53 -40.82 -0.23 8.89 16 51 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 LS Contribution 393.96 15.07 5.94 5.94 Total: -1.00 -36.49 393.96 -7.84 -44.33 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -7.98 Total: 7.84 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: 0.67 Total: 5.41 kcal Atomic # 7 Polarization: -59.39 SS G_CDS: -1.03 Total: -60.42 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.72 Total: -21.41 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -4.71 Total: 18.31 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.49 -7.84 -44.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755796509.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.375 kcal (2) G-P(sol) polarization free energy of solvation -36.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds