Wall clock time and date at job start Tue Mar 31 2020 05:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 109.47594 * 2 1 4 4 C 1.53007 * 109.46973 * 120.00208 * 2 1 3 5 5 N 1.46900 * 109.46841 * 294.84514 * 4 2 1 6 6 C 1.47020 * 110.99698 * 169.61670 * 5 4 2 7 7 C 1.53095 * 109.25521 * 182.34701 * 6 5 4 8 8 O 1.43015 * 109.29359 * 303.22074 * 7 6 5 9 9 C 1.43013 * 113.74175 * 58.64465 * 8 7 6 10 10 C 1.47020 * 110.99591 * 293.29475 * 5 4 2 11 11 C 1.50708 * 109.47042 * 239.99632 * 2 1 3 12 12 O 1.21280 * 120.00192 * 258.41735 * 11 2 1 13 13 N 1.34777 * 119.99654 * 78.42414 * 11 2 1 14 14 C 1.46499 * 120.00087 * 3.19732 * 13 11 2 15 15 C 1.46496 * 119.99693 * 183.20748 * 13 11 2 16 16 C 1.52996 * 109.47728 * 89.99201 * 15 13 11 17 17 H 1.08996 * 109.47305 * 305.00024 * 16 15 13 18 18 O 1.42908 * 109.47010 * 65.00071 * 16 15 13 19 19 C 1.52999 * 109.47038 * 184.99610 * 16 15 13 20 20 N 1.46505 * 109.46792 * 180.02562 * 19 16 15 21 21 C 1.36935 * 119.99968 * 179.97438 * 20 19 16 22 22 H 1.08005 * 120.00157 * 0.02562 * 21 20 19 23 23 C 1.38817 * 120.00136 * 179.97438 * 21 20 19 24 24 N 1.31616 * 119.99896 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 119.99908 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47334 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47028 * 120.00692 * 25 23 21 28 28 H 1.48497 * 109.47408 * 240.00335 * 25 23 21 29 29 H 1.09004 * 109.47292 * 175.91826 * 1 2 3 30 30 H 1.08998 * 109.47119 * 295.91994 * 1 2 3 31 31 H 1.08999 * 109.46920 * 55.92019 * 1 2 3 32 32 H 1.09002 * 109.46893 * 174.84642 * 4 2 1 33 33 H 1.08995 * 109.47016 * 54.84134 * 4 2 1 34 34 H 1.09004 * 109.47091 * 62.43949 * 6 5 4 35 35 H 1.09000 * 109.54076 * 302.30393 * 6 5 4 36 36 H 1.08998 * 109.50799 * 183.25749 * 7 6 5 37 37 H 1.08999 * 109.50460 * 63.17037 * 7 6 5 38 38 H 1.09008 * 109.50311 * 61.26924 * 9 8 7 39 39 H 1.09003 * 109.50588 * 181.35130 * 9 8 7 40 40 H 1.08994 * 109.50829 * 57.67789 * 10 5 4 41 41 H 1.08998 * 109.54302 * 297.56111 * 10 5 4 42 42 H 1.08997 * 109.47313 * 84.28470 * 14 13 11 43 43 H 1.09001 * 109.46967 * 204.28914 * 14 13 11 44 44 H 1.09004 * 109.47268 * 324.28452 * 14 13 11 45 45 H 1.09007 * 109.46826 * 209.99427 * 15 13 11 46 46 H 1.09000 * 109.46831 * 329.98788 * 15 13 11 47 47 H 0.96696 * 114.00218 * 59.99839 * 18 16 15 48 48 H 1.08997 * 109.47280 * 299.99810 * 19 16 15 49 49 H 1.08998 * 109.46956 * 60.00809 * 19 16 15 50 50 H 0.97004 * 120.00097 * 0.02562 * 20 19 16 51 51 H 0.96996 * 120.00077 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.6545 0.0393 2.4455 6 6 1.9071 -0.7376 3.6678 7 6 1.4382 0.0667 4.8831 8 8 2.1039 1.3324 4.8976 9 6 1.8782 2.1152 3.7223 10 6 2.3526 1.3322 2.4952 11 6 2.0323 -0.7105 -1.2305 12 8 2.4333 -1.8523 -1.1502 13 7 2.0361 -0.0770 -2.4201 14 6 1.6180 1.3245 -2.5049 15 6 2.4580 -0.7899 -3.6283 16 6 1.2439 -1.4580 -4.2766 17 1 0.7474 -2.0967 -3.5462 18 8 0.3329 -0.4541 -4.7289 19 6 1.7021 -2.3040 -5.4662 20 7 0.5393 -2.9432 -6.0875 21 6 0.7053 -3.7541 -7.1783 22 1 1.6933 -3.9229 -7.5805 23 6 -0.3964 -4.3602 -7.7666 24 7 -1.6004 -4.1550 -7.2762 25 14 -0.1699 -5.4670 -9.2543 26 1 1.2712 -5.5339 -9.6067 27 1 -0.6653 -6.8304 -8.9368 28 1 -0.9355 -4.9170 -10.4016 29 1 -0.3634 -1.0251 -0.0732 30 1 -0.3633 0.4492 0.9243 31 1 -0.3633 0.5758 -0.8512 32 1 3.1260 -0.8020 1.2043 33 1 1.6031 -1.7188 1.2966 34 1 2.9746 -0.9403 3.7554 35 1 1.3598 -1.6790 3.6211 36 1 1.6761 -0.4803 5.7954 37 1 0.3611 0.2227 4.8227 38 1 0.8139 2.3308 3.6274 39 1 2.4338 3.0501 3.7954 40 1 2.1303 1.9009 1.5923 41 1 3.4273 1.1639 2.5641 42 1 2.4619 1.9707 -2.2635 43 1 1.2728 1.5401 -3.5161 44 1 0.8080 1.5055 -1.7982 45 1 2.9024 -0.0841 -4.3301 46 1 3.1928 -1.5502 -3.3635 47 1 0.7080 0.1519 -5.3824 48 1 2.1985 -1.6652 -6.1967 49 1 2.3969 -3.0697 -5.1213 50 1 -0.3481 -2.7914 -5.7265 51 1 -2.3702 -4.5782 -7.6875 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755796510.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:55 Heat of formation + Delta-G solvation = -108.263213 kcal Electronic energy + Delta-G solvation = -29241.369141 eV Core-core repulsion = 25176.512467 eV Total energy + Delta-G solvation = -4064.856674 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.52788 -39.70170 -37.63412 -36.47469 -35.25428 -33.99634 -33.32292 -31.57399 -31.30635 -29.51890 -28.23634 -26.85213 -25.88688 -25.06716 -24.45126 -23.15812 -21.85858 -21.17579 -20.63978 -18.97634 -17.67550 -17.14227 -16.63032 -16.54130 -16.40113 -16.04631 -15.56340 -15.45265 -15.37347 -15.08985 -14.82698 -14.44006 -14.25119 -14.09009 -13.68000 -13.34493 -13.02240 -12.95663 -12.91588 -12.63672 -12.43259 -12.40190 -12.23675 -12.04666 -11.93814 -11.77631 -11.51925 -11.37548 -11.10059 -10.92345 -10.86691 -10.82339 -10.66654 -10.14142 -10.06939 -9.93329 -9.74062 -9.56292 -8.88233 -8.78744 -8.51064 -6.89750 -5.72941 -3.02268 2.56767 2.83636 3.37762 3.44751 3.49769 3.51323 3.52525 4.34548 4.40750 4.48614 4.57475 4.59207 4.73572 4.74776 4.76428 4.83539 4.92208 4.96087 5.01228 5.04002 5.15603 5.21209 5.25198 5.30813 5.38369 5.41538 5.44869 5.48002 5.56197 5.57547 5.60272 5.67523 5.75672 5.80553 5.81903 6.00857 6.11936 6.25293 6.45487 6.53548 6.54563 6.55877 6.73192 6.76267 7.29622 7.71072 8.02528 8.12455 8.45271 9.56687 10.14843 10.50782 11.49545 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.026956 B = 0.002049 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.483048 B =13659.784465 C =14007.565314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.103 4.103 3 H 0.090 0.910 4 C 0.074 3.926 5 N -0.534 5.534 6 C 0.018 3.982 7 C 0.064 3.936 8 O -0.387 6.387 9 C 0.064 3.936 10 C 0.012 3.988 11 C 0.516 3.484 12 O -0.538 6.538 13 N -0.606 5.606 14 C 0.077 3.923 15 C 0.085 3.915 16 C 0.087 3.913 17 H 0.099 0.901 18 O -0.550 6.550 19 C 0.126 3.874 20 N -0.725 5.725 21 C -0.241 4.241 22 H 0.070 0.930 23 C -0.014 4.014 24 N -0.930 5.930 25 Si 0.908 3.092 26 H -0.281 1.281 27 H -0.291 1.291 28 H -0.291 1.291 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.040 0.960 33 H 0.089 0.911 34 H 0.043 0.957 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.043 0.957 42 H 0.050 0.950 43 H 0.080 0.920 44 H 0.073 0.927 45 H 0.080 0.920 46 H 0.093 0.907 47 H 0.366 0.634 48 H 0.019 0.981 49 H 0.027 0.973 50 H 0.389 0.611 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.081 17.022 22.631 29.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.125 4.125 3 H 0.108 0.892 4 C -0.053 4.053 5 N -0.259 5.259 6 C -0.110 4.110 7 C -0.013 4.013 8 O -0.306 6.306 9 C -0.013 4.013 10 C -0.116 4.116 11 C 0.304 3.696 12 O -0.415 6.415 13 N -0.338 5.338 14 C -0.066 4.066 15 C -0.038 4.038 16 C 0.027 3.973 17 H 0.117 0.883 18 O -0.354 6.354 19 C -0.003 4.003 20 N -0.370 5.370 21 C -0.373 4.373 22 H 0.088 0.912 23 C -0.210 4.210 24 N -0.578 5.578 25 Si 0.739 3.261 26 H -0.206 1.206 27 H -0.218 1.218 28 H -0.219 1.219 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.107 0.893 34 H 0.062 0.938 35 H 0.107 0.893 36 H 0.116 0.884 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.115 0.885 40 H 0.106 0.894 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.099 0.901 44 H 0.092 0.908 45 H 0.098 0.902 46 H 0.111 0.889 47 H 0.212 0.788 48 H 0.037 0.963 49 H 0.044 0.956 50 H 0.223 0.777 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.589 16.171 23.086 29.190 hybrid contribution 0.931 -0.565 -1.513 1.865 sum 8.521 15.606 21.572 27.956 Atomic orbital electron populations 1.21704 0.91590 1.03149 1.02897 1.21250 0.98892 1.00193 0.92149 0.89200 1.21896 0.98542 0.97387 0.87518 1.62148 1.57586 1.04034 1.02158 1.22780 1.00313 0.97729 0.90180 1.22670 0.96957 0.84154 0.97491 1.87986 1.72840 1.29836 1.39932 1.22662 1.01063 0.93739 0.83810 1.22868 0.96903 0.91906 0.99910 1.20603 0.77819 0.86712 0.84491 1.90717 1.46992 1.18018 1.85787 1.47697 1.66163 1.12677 1.07285 1.21914 0.99587 0.80939 1.04190 1.22236 0.98051 0.97490 0.86027 1.22532 0.89696 0.89040 0.96028 0.88309 1.86620 1.41401 1.45021 1.62364 1.21217 0.92002 0.94642 0.92389 1.42247 1.04288 1.55856 1.34604 1.19271 0.93243 1.20182 1.04569 0.91223 1.24770 0.95335 1.01102 0.99832 1.69693 0.97621 1.47863 1.42618 0.86108 0.77164 0.80318 0.82534 1.20585 1.21846 1.21863 0.92063 0.90327 0.92063 0.94134 0.89295 0.93837 0.89277 0.88437 0.92115 0.92137 0.88518 0.89419 0.93893 0.93125 0.90131 0.90835 0.90214 0.88887 0.78772 0.96313 0.95559 0.77672 0.93562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.90 37.16 0.33 -0.96 16 2 C -0.10 -0.99 1.82 -91.77 -0.17 -1.16 16 3 H 0.09 0.69 5.42 -51.93 -0.28 0.40 16 4 C 0.07 0.74 3.71 -3.82 -0.01 0.72 16 5 N -0.53 -4.41 4.12 -234.30 -0.96 -5.37 16 6 C 0.02 0.14 5.65 -3.71 -0.02 0.12 16 7 C 0.06 0.45 7.01 37.21 0.26 0.71 16 8 O -0.39 -3.38 10.83 -35.23 -0.38 -3.77 16 9 C 0.06 0.43 7.01 37.21 0.26 0.69 16 10 C 0.01 0.09 5.45 -3.71 -0.02 0.07 16 11 C 0.52 6.81 6.85 -10.98 -0.08 6.74 16 12 O -0.54 -9.25 15.68 5.56 0.09 -9.16 16 13 N -0.61 -7.14 2.84 -181.57 -0.52 -7.66 16 14 C 0.08 0.63 9.58 59.85 0.57 1.20 16 15 C 0.09 1.12 5.06 -4.05 -0.02 1.10 16 16 C 0.09 1.47 3.30 -26.73 -0.09 1.38 16 17 H 0.10 1.96 8.14 -51.93 -0.42 1.53 16 18 O -0.55 -9.01 12.02 -35.23 -0.42 -9.43 16 19 C 0.13 2.57 5.92 -4.04 -0.02 2.55 16 20 N -0.73 -19.12 5.49 -59.90 -0.33 -19.44 16 21 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 22 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 23 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 24 N -0.93 -29.04 13.06 55.49 0.72 -28.32 16 25 Si 0.91 22.88 29.55 -169.99 -5.02 17.86 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 28 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.67 7.65 -51.93 -0.40 0.27 16 31 H 0.06 0.56 6.23 -51.93 -0.32 0.24 16 32 H 0.04 0.44 8.12 -51.93 -0.42 0.02 16 33 H 0.09 1.00 7.96 -51.93 -0.41 0.59 16 34 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.09 0.62 8.09 -51.93 -0.42 0.20 16 36 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 39 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.09 0.52 6.30 -51.93 -0.33 0.19 16 41 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.08 0.64 7.23 -51.93 -0.38 0.27 16 44 H 0.07 0.54 4.91 -51.93 -0.26 0.28 16 45 H 0.08 0.84 8.07 -51.93 -0.42 0.42 16 46 H 0.09 1.35 7.38 -51.93 -0.38 0.96 16 47 H 0.37 4.73 9.04 45.56 0.41 5.14 16 48 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 49 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.39 11.05 7.54 -40.82 -0.31 10.74 16 51 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 400.28 15.07 6.03 6.03 Total: -1.00 -35.62 400.28 -8.15 -43.77 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -8.11 Total: 9.96 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: 0.75 Total: 5.52 kcal Atomic # 7 Polarization: -59.70 SS G_CDS: -1.08 Total: -60.79 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.72 Total: -22.36 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.62 -8.15 -43.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755796510.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.494 kcal (2) G-P(sol) polarization free energy of solvation -35.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds