Wall clock time and date at job start Tue Mar 31 2020 05:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46896 * 110.99996 * 2 1 4 4 C 1.50696 * 109.47432 * 66.03853 * 3 2 1 5 5 H 1.07998 * 120.00082 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99922 * 179.97438 * 4 3 2 7 7 N 1.31519 * 119.99902 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 119.99964 * 0.02562 * 6 4 3 9 9 H 1.48496 * 109.47460 * 89.99961 * 8 6 4 10 10 H 1.48506 * 109.47025 * 209.99973 * 8 6 4 11 11 H 1.48505 * 109.47253 * 329.99145 * 8 6 4 12 12 C 1.46895 * 111.00043 * 236.03940 * 2 1 3 13 13 C 1.53001 * 109.47472 * 293.95712 * 12 2 1 14 14 H 1.08994 * 109.47392 * 59.99539 * 13 12 2 15 15 O 1.42903 * 109.46775 * 299.99727 * 13 12 2 16 16 C 1.53004 * 109.47291 * 180.02562 * 13 12 2 17 17 N 1.46900 * 109.46854 * 184.99648 * 16 13 12 18 18 C 1.46899 * 110.99437 * 179.97438 * 17 16 13 19 19 C 1.53003 * 109.46955 * 180.02562 * 18 17 16 20 20 H 1.09006 * 109.46971 * 304.99703 * 19 18 17 21 21 O 1.42897 * 109.47030 * 65.00147 * 19 18 17 22 22 C 1.53002 * 109.47171 * 185.00489 * 19 18 17 23 23 N 1.46502 * 109.47044 * 180.02562 * 22 19 18 24 24 C 1.46764 * 124.34707 * 269.99719 * 23 22 19 25 25 C 1.54480 * 105.47241 * 197.03818 * 24 23 22 26 26 C 1.54784 * 101.69261 * 334.38904 * 25 24 23 27 27 C 1.34420 * 124.35242 * 90.02020 * 23 22 19 28 28 O 1.21283 * 124.93917 * 359.53285 * 27 23 22 29 29 H 1.09001 * 109.47168 * 183.95512 * 1 2 3 30 30 H 1.08995 * 109.47500 * 303.95590 * 1 2 3 31 31 H 1.09000 * 109.47092 * 63.96145 * 1 2 3 32 32 H 1.08993 * 109.47034 * 186.04646 * 3 2 1 33 33 H 1.09002 * 109.46793 * 306.04058 * 3 2 1 34 34 H 0.96993 * 119.99636 * 180.02562 * 7 6 4 35 35 H 1.08999 * 109.47103 * 173.95586 * 12 2 1 36 36 H 1.08998 * 109.46985 * 53.95745 * 12 2 1 37 37 H 0.96693 * 114.00404 * 300.00037 * 15 13 12 38 38 H 1.08998 * 109.46795 * 64.99650 * 16 13 12 39 39 H 1.08998 * 109.46928 * 305.00014 * 16 13 12 40 40 H 1.00899 * 111.00075 * 303.95161 * 17 16 13 41 41 H 1.09003 * 109.47399 * 60.00669 * 18 17 16 42 42 H 1.09000 * 109.47374 * 299.99914 * 18 17 16 43 43 H 0.96698 * 114.00191 * 60.00245 * 21 19 18 44 44 H 1.08993 * 109.47350 * 59.99605 * 22 19 18 45 45 H 1.08998 * 109.46759 * 299.99590 * 22 19 18 46 46 H 1.09003 * 110.24343 * 316.03631 * 24 23 22 47 47 H 1.09004 * 110.24843 * 77.94733 * 24 23 22 48 48 H 1.08997 * 110.97191 * 92.70203 * 25 24 23 49 49 H 1.09002 * 110.96643 * 216.46708 * 25 24 23 50 50 H 1.08996 * 110.61291 * 266.40068 * 26 25 24 51 51 H 1.09001 * 110.42713 * 143.71017 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0472 1.2983 5 1 1.0744 1.5114 2.0486 6 6 2.0276 3.3492 1.5287 7 7 1.7150 3.9389 2.6620 8 14 3.0009 4.2757 0.2311 9 1 2.0645 4.9802 -0.6809 10 1 3.8881 5.2667 0.8916 11 1 3.8242 3.3168 -0.5487 12 6 1.9954 -0.7661 -1.1374 13 6 1.6314 -2.2427 -0.9702 14 1 0.5472 -2.3476 -0.9321 15 8 2.2009 -2.7391 0.2429 16 6 2.1803 -3.0407 -2.1546 17 7 1.7299 -4.4355 -2.0561 18 6 2.2385 -5.2334 -3.1797 19 6 1.7491 -6.6766 -3.0431 20 1 2.0373 -7.0671 -2.0671 21 8 0.3261 -6.7109 -3.1687 22 6 2.3790 -7.5349 -4.1420 23 7 1.9099 -8.9167 -4.0115 24 6 2.5795 -9.9461 -3.2079 25 6 2.0115 -11.2931 -3.7074 26 6 0.6312 -10.8651 -4.2619 27 6 0.8111 -9.4046 -4.6127 28 8 0.0690 -8.7655 -5.3281 29 1 -0.3633 -1.0252 0.0709 30 1 -0.3634 0.5740 0.8524 31 1 -0.3633 0.4511 -0.9234 32 1 3.0796 1.3443 -0.1082 33 1 1.5611 1.9272 -0.8310 34 1 1.9896 4.8549 2.8238 35 1 3.0797 -0.6612 -1.1755 36 1 1.5611 -0.3874 -2.0627 37 1 3.1652 -2.6771 0.2789 38 1 3.2698 -3.0088 -2.1405 39 1 1.8162 -2.6061 -3.0855 40 1 1.9999 -4.8411 -1.1726 41 1 3.3284 -5.2169 -3.1732 42 1 1.8743 -4.8139 -4.1175 43 1 -0.0023 -6.3772 -4.0148 44 1 3.4644 -7.5087 -4.0462 45 1 2.0908 -7.1444 -5.1180 46 1 3.6570 -9.9083 -3.3686 47 1 2.3512 -9.8075 -2.1511 48 1 2.6385 -11.7133 -4.4938 49 1 1.8969 -11.9976 -2.8836 50 1 -0.1409 -10.9826 -3.5016 51 1 0.3828 -11.4434 -5.1518 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771748105.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:05 Heat of formation + Delta-G solvation = -122.315555 kcal Electronic energy + Delta-G solvation = -28154.282398 eV Core-core repulsion = 24088.816368 eV Total energy + Delta-G solvation = -4065.466030 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.81635 -38.66466 -37.82739 -36.69762 -35.88799 -34.66384 -33.24949 -32.46062 -30.71584 -29.22153 -28.02643 -27.68211 -26.41224 -24.84069 -23.04955 -22.50438 -22.03709 -21.11564 -20.11922 -19.87257 -17.52484 -17.23079 -16.99057 -16.73446 -16.24691 -16.07915 -15.78846 -15.39860 -15.04916 -14.94636 -14.48826 -14.41789 -14.15228 -14.08586 -13.86915 -13.68857 -13.44386 -13.14970 -12.83707 -12.67881 -12.52253 -12.44311 -12.24149 -11.99380 -11.91596 -11.60363 -11.57201 -11.42555 -11.24781 -10.96747 -10.73453 -10.68924 -10.55674 -10.25971 -10.12795 -9.91584 -9.59464 -9.23400 -9.03760 -8.59912 -8.57202 -7.33133 -6.04098 -4.01145 2.25073 2.49623 3.27203 3.34719 3.35885 3.71499 3.86233 3.94103 4.18776 4.27487 4.41643 4.42267 4.51886 4.52902 4.65843 4.71675 4.76725 4.90529 4.94257 5.00119 5.10240 5.12933 5.17246 5.18942 5.21662 5.29056 5.29894 5.42193 5.43620 5.56480 5.64036 5.65802 5.94688 6.02916 6.14929 6.26075 6.32856 6.68672 6.72336 6.75197 6.85528 7.00727 7.17538 7.50426 7.59811 7.81280 7.90149 7.92035 8.09536 8.67604 9.05936 9.57424 11.09144 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.036187 B = 0.001647 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.563315 B =16999.770875 C =17013.378899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.519 5.519 3 C 0.162 3.838 4 C -0.508 4.508 5 H 0.082 0.918 6 C 0.067 3.933 7 N -0.900 5.900 8 Si 0.876 3.124 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.269 1.269 12 C 0.022 3.978 13 C 0.114 3.886 14 H 0.106 0.894 15 O -0.544 6.544 16 C 0.029 3.971 17 N -0.674 5.674 18 C 0.029 3.971 19 C 0.095 3.905 20 H 0.097 0.903 21 O -0.540 6.540 22 C 0.094 3.906 23 N -0.615 5.615 24 C 0.100 3.900 25 C -0.132 4.132 26 C -0.156 4.156 27 C 0.522 3.478 28 O -0.529 6.529 29 H 0.052 0.948 30 H 0.080 0.920 31 H 0.009 0.991 32 H 0.026 0.974 33 H -0.018 1.018 34 H 0.263 0.737 35 H 0.068 0.932 36 H 0.030 0.970 37 H 0.366 0.634 38 H 0.031 0.969 39 H 0.077 0.923 40 H 0.349 0.651 41 H 0.036 0.964 42 H 0.075 0.925 43 H 0.376 0.624 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.078 0.922 47 H 0.073 0.927 48 H 0.082 0.918 49 H 0.091 0.909 50 H 0.105 0.895 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.229 -31.401 -16.170 35.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.243 5.243 3 C 0.035 3.965 4 C -0.546 4.546 5 H 0.100 0.900 6 C -0.134 4.134 7 N -0.539 5.539 8 Si 0.704 3.296 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.194 1.194 12 C -0.108 4.108 13 C 0.054 3.946 14 H 0.123 0.877 15 O -0.347 6.347 16 C -0.101 4.101 17 N -0.306 5.306 18 C -0.102 4.102 19 C 0.034 3.966 20 H 0.115 0.885 21 O -0.344 6.344 22 C -0.030 4.030 23 N -0.349 5.349 24 C -0.023 4.023 25 C -0.170 4.170 26 C -0.196 4.196 27 C 0.310 3.690 28 O -0.405 6.405 29 H 0.070 0.930 30 H 0.099 0.901 31 H 0.027 0.973 32 H 0.044 0.956 33 H -0.001 1.001 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.048 0.952 37 H 0.212 0.788 38 H 0.049 0.951 39 H 0.096 0.904 40 H 0.168 0.832 41 H 0.054 0.946 42 H 0.094 0.906 43 H 0.223 0.777 44 H 0.104 0.896 45 H 0.104 0.896 46 H 0.096 0.904 47 H 0.091 0.909 48 H 0.100 0.900 49 H 0.109 0.891 50 H 0.124 0.876 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.849 -31.270 -15.578 35.147 hybrid contribution 1.986 1.449 -1.865 3.086 sum 5.835 -29.821 -17.443 35.037 Atomic orbital electron populations 1.22295 0.88178 1.00218 1.00663 1.61854 1.07453 1.15892 1.39078 1.20204 0.95013 0.84222 0.97025 1.21049 1.35444 0.97169 1.00925 0.90021 1.24909 0.95824 0.97359 0.95316 1.69897 1.46936 1.13211 1.23876 0.86854 0.80608 0.80009 0.82163 1.20399 1.21139 1.19368 1.22759 1.00261 0.94323 0.93448 1.21965 0.99250 0.90575 0.82785 0.87672 1.86629 1.24760 1.84825 1.38532 1.22704 0.97392 0.89519 1.00533 1.60244 1.63462 1.01671 1.05225 1.22621 0.97352 0.94004 0.96220 1.22279 0.82672 0.92732 0.98924 0.88534 1.86604 1.18861 1.87188 1.41790 1.22110 0.99475 0.80904 1.00465 1.48083 1.27619 1.10233 1.48938 1.22116 0.97593 0.86895 0.95669 1.22618 0.95748 0.96570 1.02028 1.22362 0.99141 0.94201 1.03905 1.20831 0.79848 0.89642 0.78688 1.90710 1.46445 1.65423 1.37912 0.92971 0.90123 0.97260 0.95629 1.00053 0.92686 0.91390 0.95221 0.78773 0.95110 0.90438 0.83196 0.94576 0.90609 0.77650 0.89558 0.89575 0.90395 0.90895 0.89977 0.89054 0.87631 0.88168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 9.14 60.07 0.55 1.25 16 2 N -0.52 -11.02 4.62 -244.38 -1.13 -12.15 16 3 C 0.16 3.98 3.79 -4.98 -0.02 3.96 16 4 C -0.51 -14.67 9.01 -34.44 -0.31 -14.98 16 5 H 0.08 2.58 7.37 -52.49 -0.39 2.20 16 6 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 7 N -0.90 -27.84 13.96 55.43 0.77 -27.07 16 8 Si 0.88 21.65 27.47 -169.99 -4.67 16.98 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 12 C 0.02 0.36 4.62 -3.83 -0.02 0.34 16 13 C 0.11 1.59 3.08 -26.73 -0.08 1.51 16 14 H 0.11 1.63 6.55 -51.93 -0.34 1.29 16 15 O -0.54 -8.06 12.72 -35.23 -0.45 -8.51 16 16 C 0.03 0.31 5.36 -3.82 -0.02 0.29 16 17 N -0.67 -6.94 6.45 -113.78 -0.73 -7.67 16 18 C 0.03 0.22 5.32 -3.82 -0.02 0.20 16 19 C 0.10 0.73 3.42 -26.73 -0.09 0.64 16 20 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 21 O -0.54 -5.86 12.53 -35.23 -0.44 -6.30 16 22 C 0.09 0.57 5.62 -4.04 -0.02 0.55 16 23 N -0.61 -4.14 2.86 -172.41 -0.49 -4.64 16 24 C 0.10 0.37 7.35 -3.12 -0.02 0.35 16 25 C -0.13 -0.35 7.19 -25.01 -0.18 -0.53 16 26 C -0.16 -0.80 6.87 -26.66 -0.18 -0.99 16 27 C 0.52 4.71 7.57 -10.86 -0.08 4.63 16 28 O -0.53 -6.88 17.38 5.55 0.10 -6.78 16 29 H 0.05 0.93 6.47 -51.93 -0.34 0.60 16 30 H 0.08 1.80 6.76 -51.93 -0.35 1.45 16 31 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.03 0.63 6.99 -51.93 -0.36 0.27 16 33 H -0.02 -0.45 7.55 -51.93 -0.39 -0.84 16 34 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 35 H 0.07 1.07 7.93 -51.93 -0.41 0.65 16 36 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 37 H 0.37 4.30 9.04 45.56 0.41 4.72 16 38 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.35 3.67 8.29 -39.29 -0.33 3.35 16 41 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 42 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.38 3.69 9.05 45.56 0.41 4.11 16 44 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.09 0.60 7.93 -51.93 -0.41 0.19 16 46 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 47 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 48 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 49 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 50 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 51 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 408.74 15.07 6.16 6.16 Total: -1.00 -36.12 408.74 -9.06 -45.19 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -7.58 Total: 5.72 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -0.60 Total: -0.92 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: -1.58 Total: -51.53 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.79 Total: -21.59 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -36.12 -9.06 -45.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771748105.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.130 kcal (2) G-P(sol) polarization free energy of solvation -36.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds