Wall clock time and date at job start Tue Mar 31 2020 05:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 110.99728 * 2 1 4 4 C 1.50699 * 109.47140 * 66.04805 * 3 2 1 5 5 H 1.08003 * 119.99962 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99861 * 180.02562 * 4 3 2 7 7 N 1.31522 * 120.00244 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99980 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.46946 * 59.99897 * 8 6 4 10 10 H 1.48506 * 109.46938 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46921 * 299.99580 * 8 6 4 12 12 C 1.46905 * 110.99850 * 236.04849 * 2 1 3 13 13 C 1.53000 * 109.47114 * 293.94896 * 12 2 1 14 14 H 1.09000 * 109.46550 * 60.00064 * 13 12 2 15 15 O 1.42901 * 109.46928 * 300.00575 * 13 12 2 16 16 C 1.52996 * 109.47000 * 180.02562 * 13 12 2 17 17 N 1.46899 * 109.46798 * 185.00066 * 16 13 12 18 18 C 1.46901 * 111.00076 * 179.97438 * 17 16 13 19 19 C 1.52997 * 109.47380 * 180.02562 * 18 17 16 20 20 H 1.09001 * 109.47417 * 59.99821 * 19 18 17 21 21 O 1.42905 * 109.46853 * 299.99931 * 19 18 17 22 22 C 1.52996 * 109.47211 * 180.02562 * 19 18 17 23 23 N 1.46501 * 109.47324 * 184.99957 * 22 19 18 24 24 C 1.46766 * 124.34798 * 89.99795 * 23 22 19 25 25 C 1.54486 * 105.47195 * 197.01967 * 24 23 22 26 26 C 1.54632 * 101.76100 * 334.58318 * 25 24 23 27 27 C 1.34419 * 124.34987 * 269.70022 * 23 22 19 28 28 O 1.21277 * 124.94110 * 359.57045 * 27 23 22 29 29 H 1.08996 * 109.47030 * 59.99921 * 1 2 3 30 30 H 1.08999 * 109.46702 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46890 * 299.99929 * 1 2 3 32 32 H 1.09004 * 109.47040 * 186.04743 * 3 2 1 33 33 H 1.09000 * 109.47033 * 306.04695 * 3 2 1 34 34 H 0.96992 * 120.00038 * 179.97438 * 7 6 4 35 35 H 1.08997 * 109.46807 * 53.95411 * 12 2 1 36 36 H 1.09000 * 109.46636 * 173.95277 * 12 2 1 37 37 H 0.96697 * 113.99735 * 299.99403 * 15 13 12 38 38 H 1.08995 * 109.47058 * 304.99907 * 16 13 12 39 39 H 1.08998 * 109.46953 * 65.00454 * 16 13 12 40 40 H 1.00896 * 111.00687 * 303.95477 * 17 16 13 41 41 H 1.09005 * 109.47140 * 300.00367 * 18 17 16 42 42 H 1.09001 * 109.46992 * 59.99753 * 18 17 16 43 43 H 0.96692 * 113.99938 * 299.99876 * 21 19 18 44 44 H 1.09008 * 109.47145 * 304.99826 * 22 19 18 45 45 H 1.08999 * 109.47602 * 64.99492 * 22 19 18 46 46 H 1.08999 * 110.24646 * 316.01137 * 24 23 22 47 47 H 1.08995 * 110.25045 * 77.93292 * 24 23 22 48 48 H 1.09002 * 110.97289 * 92.69904 * 25 24 23 49 49 H 1.08998 * 110.96620 * 216.46649 * 25 24 23 50 50 H 1.09001 * 110.48415 * 143.48209 * 26 25 24 51 51 H 1.09001 * 110.48411 * 265.98397 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0739 1.5115 2.0485 6 6 2.0267 3.3495 1.5284 7 7 2.7118 4.0020 0.6149 8 14 1.5829 4.1868 3.1382 9 1 2.1758 3.4297 4.2698 10 1 2.1150 5.5733 3.1381 11 1 0.1058 4.2230 3.2866 12 6 1.9954 -0.7660 -1.1377 13 6 1.6315 -2.2426 -0.9704 14 1 0.5472 -2.3474 -0.9323 15 8 2.2010 -2.7391 0.2426 16 6 2.1803 -3.0404 -2.1549 17 7 1.7299 -4.4352 -2.0566 18 6 2.2384 -5.2331 -3.1803 19 6 1.7491 -6.6763 -3.0438 20 1 0.6592 -6.6926 -3.0504 21 8 2.2262 -7.2267 -1.8143 22 6 2.2792 -7.5074 -4.2138 23 7 1.7148 -8.8578 -4.1489 24 6 0.4588 -9.2621 -4.7917 25 6 0.0549 -10.5879 -4.1094 26 6 1.4230 -11.1244 -3.6282 27 6 2.2835 -9.8871 -3.4978 28 8 3.3325 -9.8312 -2.8917 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.0797 1.3445 -0.1083 33 1 1.5610 1.9274 -0.8309 34 1 2.9857 4.9183 0.7765 35 1 1.5611 -0.3871 -2.0628 36 1 3.0797 -0.6610 -1.1757 37 1 3.1653 -2.6770 0.2786 38 1 1.8160 -2.6058 -3.0857 39 1 3.2698 -3.0086 -2.1409 40 1 2.0000 -4.8410 -1.1732 41 1 1.8742 -4.8135 -4.1181 42 1 3.3283 -5.2165 -3.1739 43 1 3.1900 -7.2439 -1.7389 44 1 1.9899 -7.0375 -5.1538 45 1 3.3661 -7.5648 -4.1557 46 1 -0.3086 -8.5053 -4.6293 47 1 0.6145 -9.4179 -5.8592 48 1 -0.6111 -10.4056 -3.2660 49 1 -0.4024 -11.2713 -4.8250 50 1 1.3195 -11.6239 -2.6649 51 1 1.8466 -11.8055 -4.3663 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771748106.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:09 Heat of formation + Delta-G solvation = -128.570923 kcal Electronic energy + Delta-G solvation = -28146.383247 eV Core-core repulsion = 24080.645965 eV Total energy + Delta-G solvation = -4065.737283 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.80040 -38.64878 -37.81427 -36.68237 -35.73528 -34.55940 -33.28635 -32.50208 -30.63561 -29.08895 -28.00446 -27.13335 -26.35076 -24.81997 -23.15360 -22.37930 -22.01602 -21.20984 -20.15004 -19.87751 -17.51410 -17.25900 -16.71490 -16.45429 -16.27924 -16.07441 -15.83283 -15.30141 -14.93782 -14.82264 -14.68415 -14.29021 -14.14840 -14.03169 -13.82309 -13.57035 -13.33403 -13.09500 -12.91787 -12.74883 -12.45019 -12.25297 -11.96312 -11.93298 -11.84534 -11.55684 -11.38381 -11.30336 -11.09489 -10.86893 -10.74187 -10.64737 -10.63604 -10.26177 -10.12769 -9.97825 -9.60546 -9.14106 -9.00885 -8.58609 -8.41401 -7.17244 -6.00942 -4.01882 2.24370 2.54042 3.35894 3.39162 3.43069 3.76136 3.88091 3.97849 4.14450 4.31140 4.43231 4.53804 4.55205 4.65208 4.66953 4.75453 4.81924 4.92794 4.99956 5.00556 5.12363 5.20292 5.21798 5.26457 5.32732 5.33074 5.37530 5.47746 5.52541 5.64532 5.69875 5.76305 6.04932 6.07487 6.22545 6.34804 6.43614 6.70760 6.80063 6.80854 7.26796 7.28927 7.34526 7.39426 7.82110 7.82702 7.99195 8.12396 8.22880 8.57711 9.05998 9.62272 11.09987 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.036633 B = 0.001611 C = 0.001607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.154197 B =17373.090161 C =17415.246545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.529 5.529 3 C 0.193 3.807 4 C -0.505 4.505 5 H 0.064 0.936 6 C 0.054 3.946 7 N -0.901 5.901 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.025 3.975 13 C 0.114 3.886 14 H 0.103 0.897 15 O -0.545 6.545 16 C 0.028 3.972 17 N -0.680 5.680 18 C 0.029 3.971 19 C 0.093 3.907 20 H 0.107 0.893 21 O -0.548 6.548 22 C 0.094 3.906 23 N -0.615 5.615 24 C 0.101 3.899 25 C -0.132 4.132 26 C -0.156 4.156 27 C 0.521 3.479 28 O -0.529 6.529 29 H 0.009 0.991 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.028 0.972 33 H -0.011 1.011 34 H 0.261 0.739 35 H 0.028 0.972 36 H 0.068 0.932 37 H 0.367 0.633 38 H 0.077 0.923 39 H 0.031 0.969 40 H 0.356 0.644 41 H 0.079 0.921 42 H 0.032 0.968 43 H 0.374 0.626 44 H 0.088 0.912 45 H 0.085 0.915 46 H 0.080 0.920 47 H 0.071 0.929 48 H 0.084 0.916 49 H 0.090 0.910 50 H 0.102 0.898 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.549 -29.084 -16.066 33.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.253 5.253 3 C 0.068 3.932 4 C -0.544 4.544 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.541 5.541 8 Si 0.727 3.273 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.203 1.203 12 C -0.105 4.105 13 C 0.054 3.946 14 H 0.121 0.879 15 O -0.348 6.348 16 C -0.102 4.102 17 N -0.313 5.313 18 C -0.102 4.102 19 C 0.032 3.968 20 H 0.125 0.875 21 O -0.353 6.353 22 C -0.029 4.029 23 N -0.349 5.349 24 C -0.022 4.022 25 C -0.170 4.170 26 C -0.196 4.196 27 C 0.309 3.691 28 O -0.405 6.405 29 H 0.027 0.973 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.046 0.954 33 H 0.007 0.993 34 H 0.071 0.929 35 H 0.046 0.954 36 H 0.086 0.914 37 H 0.213 0.787 38 H 0.095 0.905 39 H 0.050 0.950 40 H 0.176 0.824 41 H 0.098 0.902 42 H 0.050 0.950 43 H 0.221 0.779 44 H 0.106 0.894 45 H 0.103 0.897 46 H 0.098 0.902 47 H 0.090 0.910 48 H 0.102 0.898 49 H 0.109 0.891 50 H 0.120 0.880 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.585 -29.078 -15.389 33.217 hybrid contribution 1.604 1.298 -0.288 2.084 sum -2.981 -27.779 -15.677 32.037 Atomic orbital electron populations 1.22238 0.88923 0.99298 1.00647 1.62022 1.06910 1.17349 1.39039 1.19748 0.95222 0.81657 0.96618 1.21140 1.34712 0.96856 1.01700 0.91827 1.24996 0.95328 0.97344 0.97034 1.69951 1.38519 1.11458 1.34160 0.86538 0.78699 0.78238 0.83798 1.20130 1.21405 1.20283 1.22698 1.00342 0.93907 0.93546 1.21978 0.99006 0.90866 0.82770 0.87914 1.86613 1.24835 1.84854 1.38544 1.22706 0.97577 0.89394 1.00531 1.60285 1.63313 1.01755 1.05962 1.22575 0.97370 0.93925 0.96336 1.22394 1.00324 0.89917 0.84143 0.87519 1.86636 1.26820 1.84664 1.37202 1.22097 0.99502 0.81713 0.99568 1.48109 1.24320 1.09675 1.52841 1.22107 0.85945 0.97233 0.96963 1.22591 0.96743 0.96081 1.01542 1.22323 0.95640 0.96943 1.04692 1.20843 0.85291 0.85554 0.77403 1.90709 1.23180 1.84537 1.42035 0.97280 0.93379 0.90863 0.95441 0.99316 0.92933 0.95362 0.91383 0.78701 0.90470 0.95038 0.82366 0.90220 0.95013 0.77857 0.89359 0.89675 0.90209 0.91045 0.89754 0.89146 0.87971 0.88026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 9.16 60.06 0.55 1.31 16 2 N -0.53 -11.64 4.62 -244.36 -1.13 -12.77 16 3 C 0.19 5.11 4.72 -4.97 -0.02 5.08 16 4 C -0.51 -14.50 8.52 -34.44 -0.29 -14.80 16 5 H 0.06 1.82 7.10 -52.48 -0.37 1.45 16 6 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 8 Si 0.90 22.01 29.54 -169.99 -5.02 16.98 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 C 0.02 0.43 4.62 -3.82 -0.02 0.42 16 13 C 0.11 1.66 3.08 -26.73 -0.08 1.58 16 14 H 0.10 1.62 6.47 -51.93 -0.34 1.29 16 15 O -0.54 -8.54 12.72 -35.23 -0.45 -8.99 16 16 C 0.03 0.32 5.36 -3.83 -0.02 0.30 16 17 N -0.68 -7.34 6.50 -113.78 -0.74 -8.08 16 18 C 0.03 0.23 5.39 -3.82 -0.02 0.21 16 19 C 0.09 0.73 3.48 -26.73 -0.09 0.64 16 20 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 21 O -0.55 -5.67 12.29 -35.23 -0.43 -6.11 16 22 C 0.09 0.60 5.58 -4.04 -0.02 0.58 16 23 N -0.62 -4.26 2.90 -172.41 -0.50 -4.76 16 24 C 0.10 0.39 7.35 -3.12 -0.02 0.37 16 25 C -0.13 -0.42 7.18 -25.09 -0.18 -0.60 16 26 C -0.16 -0.82 6.86 -26.74 -0.18 -1.01 16 27 C 0.52 4.80 7.74 -10.86 -0.08 4.71 16 28 O -0.53 -6.99 17.53 5.56 0.10 -6.89 16 29 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.05 0.86 6.30 -51.93 -0.33 0.53 16 31 H 0.07 1.59 6.86 -51.93 -0.36 1.24 16 32 H 0.03 0.77 7.93 -51.93 -0.41 0.36 16 33 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 36 H 0.07 1.17 7.93 -51.93 -0.41 0.76 16 37 H 0.37 4.73 9.04 45.56 0.41 5.14 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.36 4.24 7.68 -39.29 -0.30 3.93 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.37 3.30 9.04 45.56 0.41 3.72 16 44 H 0.09 0.37 8.14 -51.92 -0.42 -0.05 16 45 H 0.08 0.61 7.92 -51.93 -0.41 0.20 16 46 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 47 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 48 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 49 H 0.09 0.11 8.14 -51.93 -0.42 -0.32 16 50 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 51 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 411.89 15.07 6.21 6.21 Total: -1.00 -35.39 411.89 -9.40 -44.79 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -7.58 Total: 5.68 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -0.59 Total: 0.24 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: -1.63 Total: -51.92 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -0.78 Total: -21.99 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -35.39 -9.40 -44.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771748106.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.779 kcal (2) G-P(sol) polarization free energy of solvation -35.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds