Wall clock time and date at job start Tue Mar 31 2020 04:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38284 * 119.94171 * 2 1 4 4 C 1.38093 * 120.08363 * 180.26167 * 3 2 1 5 5 C 1.38899 * 119.95652 * 359.44147 * 4 3 2 6 6 N 1.39928 * 120.06588 * 180.30137 * 5 4 3 7 7 C 1.34776 * 120.00118 * 213.26615 * 6 5 4 8 8 O 1.21578 * 120.00080 * 4.96187 * 7 6 5 9 9 N 1.34775 * 119.99786 * 184.96357 * 7 6 5 10 10 C 1.39232 * 120.00064 * 185.35676 * 9 7 6 11 11 C 1.39478 * 119.83470 * 213.80957 * 10 9 7 12 12 C 1.36377 * 120.16659 * 179.75904 * 11 10 9 13 13 C 1.40869 * 119.82854 * 0.53107 * 12 11 10 14 14 C 1.41153 * 120.16576 * 179.69810 * 13 12 11 15 15 H 1.08001 * 120.00404 * 211.23452 * 14 13 12 16 16 C 1.39896 * 119.99805 * 31.22345 * 14 13 12 17 17 N 1.30881 * 119.99725 * 8.10992 * 16 14 13 18 18 Si 1.86801 * 119.99950 * 188.09966 * 16 14 13 19 19 H 1.48503 * 109.47018 * 60.00838 * 18 16 14 20 20 H 1.48506 * 109.46733 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47297 * 300.00351 * 18 16 14 22 22 C 1.40870 * 119.67440 * 359.72340 * 13 12 11 23 23 C 1.36375 * 119.82670 * 359.97438 * 22 13 12 24 24 C 1.38833 * 119.87249 * 0.28258 * 5 4 3 25 25 C 1.38244 * 119.91550 * 359.97438 * 24 5 4 26 26 Cl 1.73605 * 119.97597 * 180.02562 * 25 24 5 27 27 H 1.09004 * 109.46870 * 270.29921 * 1 2 3 28 28 H 1.09000 * 109.46910 * 30.29299 * 1 2 3 29 29 H 1.08997 * 109.47497 * 150.29954 * 1 2 3 30 30 H 1.07999 * 119.95348 * 359.97438 * 3 2 1 31 31 H 1.08002 * 120.02089 * 179.71782 * 4 3 2 32 32 H 0.96997 * 119.99681 * 33.26193 * 6 5 4 33 33 H 0.96997 * 120.00528 * 5.35687 * 9 7 6 34 34 H 1.08002 * 119.91717 * 0.02562 * 11 10 9 35 35 H 1.07998 * 120.08589 * 180.25155 * 12 11 10 36 36 H 0.97001 * 119.99438 * 179.97438 * 17 16 14 37 37 H 1.08002 * 120.08569 * 179.97438 * 22 13 12 38 38 H 1.07999 * 119.91840 * 180.02562 * 23 22 13 39 39 H 1.07998 * 120.03640 * 179.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1983 0.0000 4 6 3.5781 1.2017 -0.0055 5 6 4.2747 0.0000 0.0008 6 7 5.6740 0.0009 0.0016 7 6 6.3488 -0.9777 -0.6335 8 8 5.7453 -1.8100 -1.2824 9 7 7.6928 -1.0337 -0.5491 10 6 8.3985 -1.9752 -1.2935 11 6 9.5634 -2.5392 -0.7737 12 6 10.2572 -3.4656 -1.4949 13 6 9.8007 -3.8442 -2.7727 14 6 10.5168 -4.7977 -3.5280 15 1 10.5183 -4.7417 -4.6066 16 6 11.2249 -5.8151 -2.8795 17 7 11.0970 -5.9803 -1.5874 18 14 12.3527 -6.9379 -3.8576 19 1 13.4098 -6.1276 -4.5142 20 1 12.9813 -7.9257 -2.9441 21 1 11.5632 -7.6534 -4.8920 22 6 8.6263 -3.2662 -3.2932 23 6 7.9397 -2.3456 -2.5576 24 6 3.5799 -1.2019 0.0066 25 6 2.1975 -1.1993 0.0066 26 17 1.3272 -2.7014 0.0145 27 1 -0.3633 0.0054 1.0277 28 1 -0.3633 0.8874 -0.5184 29 1 -0.3634 -0.8926 -0.5091 30 1 1.6555 2.1326 -0.0004 31 1 4.1161 2.1382 -0.0101 32 1 6.1582 0.7058 0.4593 33 1 8.1685 -0.4181 0.0302 34 1 9.9145 -2.2448 0.2043 35 1 11.1568 -3.9045 -1.0894 36 1 11.5877 -6.6860 -1.1379 37 1 8.2705 -3.5513 -4.2723 38 1 7.0389 -1.9018 -2.9551 39 1 4.1189 -2.1378 0.0110 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000151571.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:24 Heat of formation + Delta-G solvation = 12.367312 kcal Electronic energy + Delta-G solvation = -24072.945403 eV Core-core repulsion = 20391.952894 eV Total energy + Delta-G solvation = -3680.992509 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.70780 -39.19430 -37.52419 -36.51510 -35.04664 -34.44436 -33.03780 -31.58161 -30.87306 -29.60659 -28.86623 -26.58069 -24.81889 -23.21089 -22.25832 -21.41502 -20.79692 -20.15552 -18.28894 -17.87052 -17.28534 -16.20106 -15.86837 -15.56039 -15.21756 -14.90795 -14.50565 -14.27146 -14.12126 -13.94095 -13.69702 -13.11705 -12.72462 -12.64971 -12.48062 -12.16487 -12.04390 -11.90102 -11.76633 -11.46658 -11.37084 -11.13531 -11.07417 -10.89761 -10.75484 -10.18107 -10.10339 -9.61917 -9.54421 -9.28209 -8.98022 -8.86206 -8.10366 -7.57214 -6.92260 -6.68498 -4.32928 1.00502 1.17088 2.07127 2.58831 2.80226 3.06661 3.08305 3.09550 3.11114 3.37253 3.70666 3.95695 4.40437 4.60710 4.67091 4.75036 4.89433 5.10396 5.23139 5.41748 5.49557 5.62993 5.67268 5.76375 5.98607 6.11472 6.16993 6.28468 6.29783 6.38183 6.69622 6.70946 6.84470 7.00567 7.10186 7.20515 7.30961 7.59835 7.78151 7.89759 8.03582 8.26317 8.31646 8.59709 8.80332 8.89566 8.98880 10.25115 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.021606 B = 0.002393 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.616034 B =11695.812823 C =12497.015903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.103 4.103 3 C -0.089 4.089 4 C -0.146 4.146 5 C 0.185 3.815 6 N -0.691 5.691 7 C 0.690 3.310 8 O -0.556 6.556 9 N -0.658 5.658 10 C 0.013 3.987 11 C -0.116 4.116 12 C -0.143 4.143 13 C 0.105 3.895 14 C -0.460 4.460 15 H 0.077 0.923 16 C 0.071 3.929 17 N -0.805 5.805 18 Si 0.913 3.087 19 H -0.265 1.265 20 H -0.279 1.279 21 H -0.266 1.266 22 C -0.208 4.208 23 C -0.079 4.079 24 C -0.110 4.110 25 C -0.014 4.014 26 Cl -0.066 7.066 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.133 0.867 31 H 0.130 0.870 32 H 0.406 0.594 33 H 0.393 0.607 34 H 0.091 0.909 35 H 0.124 0.876 36 H 0.280 0.720 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.619 13.856 6.990 20.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.105 4.105 3 C -0.108 4.108 4 C -0.167 4.167 5 C 0.089 3.911 6 N -0.339 5.339 7 C 0.391 3.609 8 O -0.431 6.431 9 N -0.303 5.303 10 C -0.079 4.079 11 C -0.137 4.137 12 C -0.163 4.163 13 C 0.102 3.898 14 C -0.490 4.490 15 H 0.095 0.905 16 C -0.145 4.145 17 N -0.431 5.431 18 Si 0.737 3.263 19 H -0.189 1.189 20 H -0.204 1.204 21 H -0.191 1.191 22 C -0.228 4.228 23 C -0.100 4.100 24 C -0.131 4.131 25 C -0.042 4.042 26 Cl -0.037 7.037 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.151 0.849 31 H 0.148 0.852 32 H 0.241 0.759 33 H 0.227 0.773 34 H 0.109 0.891 35 H 0.141 0.859 36 H 0.091 0.909 37 H 0.114 0.886 38 H 0.120 0.880 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -14.067 12.759 6.568 20.095 hybrid contribution 0.981 -0.106 0.216 1.010 sum -13.086 12.653 6.784 19.426 Atomic orbital electron populations 1.20805 0.90448 1.03271 1.02572 1.19694 0.96668 0.91348 1.02809 1.20685 0.93157 0.97043 0.99931 1.20923 0.94428 0.96580 1.04789 1.17278 0.82009 0.93179 0.98646 1.42697 1.04256 1.29484 1.57431 1.16021 0.82387 0.81842 0.80624 1.90967 1.67295 1.40292 1.44553 1.42105 1.03720 1.37116 1.47370 1.16975 0.97450 1.00700 0.92805 1.20207 0.96309 0.98896 0.98264 1.20937 1.01067 0.97532 0.96786 1.17680 0.89681 0.90242 0.92169 1.19495 1.25905 1.08992 0.94649 0.90522 1.25891 0.95624 0.97927 0.95036 1.69793 1.34874 1.28859 1.09572 0.86296 0.80369 0.79510 0.80076 1.18947 1.20403 1.19062 1.20728 0.97452 1.03750 1.00844 1.20265 0.98730 0.98563 0.92397 1.21136 0.91932 0.99390 1.00677 1.20584 0.91899 0.86751 1.04944 1.98359 1.76335 1.32255 1.96798 0.91010 0.91332 0.90978 0.84922 0.85201 0.75887 0.77318 0.89094 0.85867 0.90943 0.88582 0.87960 0.83188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 9.61 36.00 0.35 -0.58 16 2 C -0.10 -1.10 5.89 -104.55 -0.62 -1.72 16 3 C -0.09 -0.82 9.69 -39.62 -0.38 -1.21 16 4 C -0.15 -1.45 9.96 -39.39 -0.39 -1.84 16 5 C 0.19 2.39 6.28 -83.70 -0.53 1.86 16 6 N -0.69 -8.62 5.35 -14.23 -0.08 -8.70 16 7 C 0.69 11.90 8.02 -86.92 -0.70 11.20 16 8 O -0.56 -12.01 11.71 5.30 0.06 -11.95 16 9 N -0.66 -11.13 5.31 -14.10 -0.07 -11.20 16 10 C 0.01 0.29 6.28 -83.57 -0.52 -0.24 16 11 C -0.12 -2.60 9.89 -39.79 -0.39 -3.00 16 12 C -0.14 -3.64 8.59 -39.26 -0.34 -3.97 16 13 C 0.10 2.80 5.53 -106.80 -0.59 2.21 16 14 C -0.46 -12.22 9.04 -37.86 -0.34 -12.56 16 15 H 0.08 1.95 7.86 -52.49 -0.41 1.54 16 16 C 0.07 1.80 5.28 -17.34 -0.09 1.71 16 17 N -0.80 -20.89 10.86 55.55 0.60 -20.29 16 18 Si 0.91 18.82 29.57 -169.99 -5.03 13.80 16 19 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 20 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 21 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 22 C -0.21 -5.26 9.74 -39.26 -0.38 -5.64 16 23 C -0.08 -1.89 8.57 -39.79 -0.34 -2.23 16 24 C -0.11 -1.63 8.44 -39.36 -0.33 -1.97 16 25 C -0.01 -0.19 6.31 -39.52 -0.25 -0.44 16 26 Cl -0.07 -0.85 27.28 -51.86 -1.41 -2.26 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 29 H 0.07 0.62 6.89 -51.93 -0.36 0.26 16 30 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 31 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 32 H 0.41 3.41 8.84 -40.82 -0.36 3.05 16 33 H 0.39 4.99 8.84 -40.82 -0.36 4.63 16 34 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 35 H 0.12 3.21 6.30 -52.49 -0.33 2.88 16 36 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 37 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 38 H 0.10 2.43 6.44 -52.49 -0.34 2.09 16 39 H 0.15 2.64 6.40 -52.49 -0.34 2.30 16 LS Contribution 346.87 15.07 5.23 5.23 Total: -1.00 -30.96 346.87 -10.72 -41.68 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -4.17 Total: 12.10 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: -5.85 Total: -18.40 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 0.45 Total: -40.19 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.06 Total: -11.95 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.80 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.41 Total: -2.26 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.96 -10.72 -41.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000151571.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.047 kcal (2) G-P(sol) polarization free energy of solvation -30.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds