Wall clock time and date at job start Tue Mar 31 2020 04:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38284 * 119.94171 * 2 1 4 4 C 1.38093 * 120.08363 * 180.26167 * 3 2 1 5 5 C 1.38899 * 119.95652 * 359.44147 * 4 3 2 6 6 N 1.39928 * 120.06588 * 180.30137 * 5 4 3 7 7 C 1.34776 * 120.00118 * 213.26615 * 6 5 4 8 8 O 1.21578 * 120.00080 * 4.96187 * 7 6 5 9 9 N 1.34775 * 119.99786 * 184.96357 * 7 6 5 10 10 C 1.39232 * 120.00064 * 185.35676 * 9 7 6 11 11 C 1.39478 * 119.83470 * 213.80957 * 10 9 7 12 12 C 1.36377 * 120.16659 * 179.75904 * 11 10 9 13 13 C 1.40869 * 119.82854 * 0.53107 * 12 11 10 14 14 C 1.41153 * 120.16576 * 179.69810 * 13 12 11 15 15 H 1.08001 * 120.00404 * 211.23452 * 14 13 12 16 16 C 1.39896 * 119.99805 * 31.22345 * 14 13 12 17 17 N 1.30881 * 119.99725 * 8.10992 * 16 14 13 18 18 Si 1.86801 * 119.99950 * 188.09966 * 16 14 13 19 19 H 1.48503 * 109.47018 * 60.00838 * 18 16 14 20 20 H 1.48506 * 109.46733 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47297 * 300.00351 * 18 16 14 22 22 C 1.40870 * 119.67440 * 359.72340 * 13 12 11 23 23 C 1.36375 * 119.82670 * 359.97438 * 22 13 12 24 24 C 1.38833 * 119.87249 * 0.28258 * 5 4 3 25 25 C 1.38244 * 119.91550 * 359.97438 * 24 5 4 26 26 Cl 1.73605 * 119.97597 * 180.02562 * 25 24 5 27 27 H 1.09004 * 109.46870 * 270.29921 * 1 2 3 28 28 H 1.09000 * 109.46910 * 30.29299 * 1 2 3 29 29 H 1.08997 * 109.47497 * 150.29954 * 1 2 3 30 30 H 1.07999 * 119.95348 * 359.97438 * 3 2 1 31 31 H 1.08002 * 120.02089 * 179.71782 * 4 3 2 32 32 H 0.96997 * 119.99681 * 33.26193 * 6 5 4 33 33 H 0.96997 * 120.00528 * 5.35687 * 9 7 6 34 34 H 1.08002 * 119.91717 * 0.02562 * 11 10 9 35 35 H 1.07998 * 120.08589 * 180.25155 * 12 11 10 36 36 H 0.97001 * 119.99438 * 179.97438 * 17 16 14 37 37 H 1.08002 * 120.08569 * 179.97438 * 22 13 12 38 38 H 1.07999 * 119.91840 * 180.02562 * 23 22 13 39 39 H 1.07998 * 120.03640 * 179.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1983 0.0000 4 6 3.5781 1.2017 -0.0055 5 6 4.2747 0.0000 0.0008 6 7 5.6740 0.0009 0.0016 7 6 6.3488 -0.9777 -0.6335 8 8 5.7453 -1.8100 -1.2824 9 7 7.6928 -1.0337 -0.5491 10 6 8.3985 -1.9752 -1.2935 11 6 9.5634 -2.5392 -0.7737 12 6 10.2572 -3.4656 -1.4949 13 6 9.8007 -3.8442 -2.7727 14 6 10.5168 -4.7977 -3.5280 15 1 10.5183 -4.7417 -4.6066 16 6 11.2249 -5.8151 -2.8795 17 7 11.0970 -5.9803 -1.5874 18 14 12.3527 -6.9379 -3.8576 19 1 13.4098 -6.1276 -4.5142 20 1 12.9813 -7.9257 -2.9441 21 1 11.5632 -7.6534 -4.8920 22 6 8.6263 -3.2662 -3.2932 23 6 7.9397 -2.3456 -2.5576 24 6 3.5799 -1.2019 0.0066 25 6 2.1975 -1.1993 0.0066 26 17 1.3272 -2.7014 0.0145 27 1 -0.3633 0.0054 1.0277 28 1 -0.3633 0.8874 -0.5184 29 1 -0.3634 -0.8926 -0.5091 30 1 1.6555 2.1326 -0.0004 31 1 4.1161 2.1382 -0.0101 32 1 6.1582 0.7058 0.4593 33 1 8.1685 -0.4181 0.0302 34 1 9.9145 -2.2448 0.2043 35 1 11.1568 -3.9045 -1.0894 36 1 11.5877 -6.6860 -1.1379 37 1 8.2705 -3.5513 -4.2723 38 1 7.0389 -1.9018 -2.9551 39 1 4.1189 -2.1378 0.0110 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000151571.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:23 Heat of formation + Delta-G solvation = -5.190973 kcal Electronic energy + Delta-G solvation = -24073.706787 eV Core-core repulsion = 20391.952894 eV Total energy + Delta-G solvation = -3681.753893 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.96256 -40.35551 -39.17747 -37.53469 -36.38726 -35.92797 -34.77416 -32.58064 -31.75618 -31.48058 -30.65346 -27.65185 -26.45075 -24.20201 -23.67832 -22.92823 -22.23775 -21.63060 -19.63721 -19.17290 -19.06148 -17.70597 -17.04792 -16.91167 -16.44467 -16.26430 -15.71300 -15.64408 -15.31397 -15.10997 -14.88631 -14.57093 -14.43807 -14.01384 -13.67910 -13.45088 -13.26494 -13.24968 -12.97442 -12.87141 -12.77654 -12.72525 -12.48999 -12.26413 -11.88269 -11.76022 -11.41055 -11.33639 -11.21689 -11.00789 -10.72208 -9.79867 -9.48569 -9.09334 -8.73965 -8.54996 -6.30456 0.11337 0.25878 0.82783 1.11986 1.12846 1.39407 1.46869 1.51277 1.59837 2.03551 2.23496 2.66991 2.79924 3.20998 3.70056 3.83220 3.93954 4.12188 4.26768 4.38030 4.41599 4.47967 4.71803 4.77696 4.84683 4.89847 5.04807 5.08728 5.12350 5.16934 5.27674 5.29741 5.40548 5.41932 5.47526 5.63963 5.77070 5.90151 6.00197 6.07539 6.17718 6.37427 6.65844 6.94585 6.97874 7.01278 7.49856 8.39528 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.021606 B = 0.002393 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.616034 B =11695.812823 C =12497.015903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.101 4.101 3 C -0.081 4.081 4 C -0.129 4.129 5 C 0.161 3.839 6 N -0.667 5.667 7 C 0.691 3.309 8 O -0.603 6.603 9 N -0.649 5.649 10 C 0.035 3.965 11 C -0.114 4.114 12 C -0.160 4.160 13 C 0.073 3.927 14 C -0.498 4.498 15 H 0.073 0.927 16 C 0.030 3.970 17 N -0.836 5.836 18 Si 0.986 3.014 19 H -0.257 1.257 20 H -0.268 1.268 21 H -0.265 1.265 22 C -0.225 4.225 23 C -0.090 4.090 24 C -0.138 4.138 25 C -0.035 4.035 26 Cl -0.077 7.077 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.061 0.939 30 H 0.175 0.825 31 H 0.167 0.833 32 H 0.428 0.572 33 H 0.418 0.582 34 H 0.127 0.873 35 H 0.112 0.888 36 H 0.287 0.713 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.469 16.757 8.096 23.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.103 4.103 3 C -0.099 4.099 4 C -0.149 4.149 5 C 0.065 3.935 6 N -0.317 5.317 7 C 0.392 3.608 8 O -0.481 6.481 9 N -0.297 5.297 10 C -0.059 4.059 11 C -0.134 4.134 12 C -0.180 4.180 13 C 0.070 3.930 14 C -0.528 4.528 15 H 0.092 0.908 16 C -0.183 4.183 17 N -0.464 5.464 18 Si 0.807 3.193 19 H -0.182 1.182 20 H -0.192 1.192 21 H -0.189 1.189 22 C -0.245 4.245 23 C -0.111 4.111 24 C -0.160 4.160 25 C -0.062 4.062 26 Cl -0.048 7.048 27 H 0.103 0.897 28 H 0.112 0.888 29 H 0.080 0.920 30 H 0.193 0.807 31 H 0.185 0.815 32 H 0.268 0.732 33 H 0.256 0.744 34 H 0.145 0.855 35 H 0.130 0.870 36 H 0.097 0.903 37 H 0.112 0.888 38 H 0.119 0.881 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -14.936 15.741 7.731 23.035 hybrid contribution 1.023 -0.828 -0.030 1.316 sum -13.913 14.914 7.700 21.801 Atomic orbital electron populations 1.20883 0.88553 1.04024 1.03625 1.20117 0.98155 0.90860 1.01142 1.21213 0.93039 0.97944 0.97704 1.21320 0.94882 0.96523 1.02195 1.17507 0.81819 0.93759 1.00366 1.42312 1.04317 1.28581 1.56453 1.16157 0.82198 0.82124 0.80332 1.90956 1.68209 1.42358 1.46583 1.41829 1.03825 1.36750 1.47269 1.16971 0.96845 0.99994 0.92103 1.20467 0.95971 0.97683 0.99287 1.20944 1.01379 0.98757 0.96924 1.17992 0.90489 0.91205 0.93293 1.19727 1.27952 1.10420 0.94735 0.90846 1.26733 0.96553 0.98939 0.96053 1.69852 1.35734 1.29785 1.10987 0.85194 0.78167 0.77436 0.78517 1.18153 1.19203 1.18933 1.20844 0.97746 1.04663 1.01234 1.20349 0.98585 0.98709 0.93435 1.20963 0.92862 0.98846 1.03310 1.20763 0.91500 0.87479 1.06426 1.98345 1.76319 1.33201 1.96928 0.89714 0.88836 0.91989 0.80750 0.81512 0.73221 0.74450 0.85530 0.87007 0.90294 0.88838 0.88147 0.87103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.52 9.61 71.23 0.68 -0.84 16 2 C -0.10 -1.90 5.89 -19.82 -0.12 -2.02 16 3 C -0.08 -1.12 9.69 22.25 0.22 -0.91 16 4 C -0.13 -2.02 9.96 22.39 0.22 -1.80 16 5 C 0.16 3.89 6.28 38.15 0.24 4.13 16 6 N -0.67 -15.35 5.35 -317.20 -1.70 -17.05 16 7 C 0.69 23.37 8.02 179.06 1.44 24.81 16 8 O -0.60 -26.73 11.71 -3.96 -0.05 -26.78 16 9 N -0.65 -20.99 5.31 -316.79 -1.68 -22.68 16 10 C 0.03 1.51 6.28 38.57 0.24 1.75 16 11 C -0.11 -5.04 9.89 22.13 0.22 -4.83 16 12 C -0.16 -8.34 8.59 22.48 0.19 -8.14 16 13 C 0.07 4.05 5.53 -21.28 -0.12 3.93 16 14 C -0.50 -27.60 9.04 23.39 0.21 -27.39 16 15 H 0.07 3.93 7.86 -2.91 -0.02 3.91 16 16 C 0.03 1.55 5.28 85.24 0.45 2.01 16 17 N -0.84 -44.55 10.86 21.82 0.24 -44.31 16 18 Si 0.99 39.17 29.57 68.60 2.03 41.20 16 19 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 20 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 21 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 22 C -0.22 -11.92 9.74 22.48 0.22 -11.70 16 23 C -0.09 -4.42 8.57 22.14 0.19 -4.24 16 24 C -0.14 -4.18 8.44 22.41 0.19 -3.99 16 25 C -0.03 -0.90 6.31 22.31 0.14 -0.76 16 26 Cl -0.08 -2.02 27.28 -2.72 -0.07 -2.10 16 27 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 28 H 0.09 0.79 8.09 -2.39 -0.02 0.77 16 29 H 0.06 0.97 6.89 -2.39 -0.02 0.96 16 30 H 0.18 1.04 8.06 -2.91 -0.02 1.02 16 31 H 0.17 1.40 8.06 -2.91 -0.02 1.37 16 32 H 0.43 5.76 8.84 -92.71 -0.82 4.94 16 33 H 0.42 9.42 8.84 -92.71 -0.82 8.60 16 34 H 0.13 4.63 8.06 -2.91 -0.02 4.61 16 35 H 0.11 6.02 6.30 -2.91 -0.02 6.00 16 36 H 0.29 13.85 8.30 -92.71 -0.77 13.08 16 37 H 0.09 4.81 8.06 -2.91 -0.02 4.79 16 38 H 0.10 4.91 6.44 -2.91 -0.02 4.89 16 39 H 0.11 4.20 6.40 -2.91 -0.02 4.18 16 Total: -1.00 -72.62 346.87 2.87 -69.75 By element: Atomic # 1 Polarization: 32.45 SS G_CDS: -0.52 Total: 31.93 kcal Atomic # 6 Polarization: -34.60 SS G_CDS: 4.62 Total: -29.98 kcal Atomic # 7 Polarization: -80.89 SS G_CDS: -3.14 Total: -84.04 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: -0.05 Total: -26.78 kcal Atomic # 14 Polarization: 39.17 SS G_CDS: 2.03 Total: 41.20 kcal Atomic # 17 Polarization: -2.02 SS G_CDS: -0.07 Total: -2.10 kcal Total: -72.62 2.87 -69.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000151571.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.562 kcal (2) G-P(sol) polarization free energy of solvation -72.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds