Wall clock time and date at job start Tue Mar 31 2020 06:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 120.00176 * 2 1 4 4 H 1.48497 * 109.47174 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46803 * 300.00407 * 3 2 1 6 6 H 1.48497 * 109.46802 * 60.00126 * 3 2 1 7 7 C 1.38809 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99840 * 179.97438 * 7 2 1 9 9 S 1.76197 * 119.99811 * 359.97438 * 7 2 1 10 10 C 1.76204 * 99.99767 * 179.97438 * 9 7 2 11 11 N 1.30956 * 118.46284 * 0.02562 * 10 9 7 12 12 C 1.34771 * 121.65329 * 180.02562 * 11 10 9 13 13 C 1.39834 * 121.54518 * 180.02562 * 12 11 10 14 14 C 1.36601 * 119.80017 * 179.97438 * 13 12 11 15 15 C 1.38913 * 120.98001 * 0.02562 * 14 13 12 16 16 C 1.37787 * 120.59027 * 359.97438 * 15 14 13 17 17 C 1.39381 * 119.41026 * 0.02562 * 16 15 14 18 18 C 1.46959 * 121.87437 * 180.02562 * 17 16 15 19 19 O 1.21726 * 121.26103 * 359.95491 * 18 17 16 20 20 N 1.35351 * 117.48268 * 179.97438 * 18 17 16 21 21 C 1.46504 * 119.78590 * 179.97438 * 20 18 17 22 22 C 1.52993 * 109.46954 * 95.87425 * 21 20 18 23 23 C 1.54263 * 110.03759 * 292.50720 * 22 21 20 24 24 C 1.54887 * 104.20069 * 217.10683 * 23 22 21 25 25 C 1.54884 * 102.74779 * 37.93920 * 24 23 22 26 26 C 1.53877 * 110.03121 * 175.34142 * 22 21 20 27 27 H 0.96996 * 120.00052 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.09796 * 359.97438 * 13 12 11 29 29 H 1.08004 * 119.50838 * 180.27644 * 14 13 12 30 30 H 1.07998 * 119.71124 * 179.97438 * 15 14 13 31 31 H 1.08001 * 120.30012 * 180.02562 * 16 15 14 32 32 H 1.08997 * 109.47497 * 215.87562 * 21 20 18 33 33 H 1.09009 * 109.46916 * 335.87564 * 21 20 18 34 34 H 1.09004 * 110.01978 * 53.94983 * 22 21 20 35 35 H 1.09002 * 110.48518 * 335.78926 * 23 22 21 36 36 H 1.08999 * 110.48639 * 98.42343 * 23 22 21 37 37 H 1.09001 * 110.75685 * 279.62666 * 24 23 22 38 38 H 1.08999 * 110.75987 * 156.25446 * 24 23 22 39 39 H 1.09005 * 110.49127 * 203.38151 * 25 24 23 40 40 H 1.09008 * 110.59957 * 80.79117 * 25 24 23 41 41 H 1.09004 * 110.03198 * 238.56867 * 26 22 21 42 42 H 1.08997 * 110.03485 * 359.95135 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0092 -1.2021 -0.0005 8 1 3.0892 -1.2021 -0.0010 9 16 1.1282 -2.7280 -0.0005 10 6 2.4780 -3.8606 -0.0021 11 7 3.6961 -3.3799 -0.0023 12 6 4.7751 -4.1874 -0.0040 13 6 6.0749 -3.6716 -0.0037 14 6 7.1431 -4.5230 -0.0049 15 6 6.9600 -5.9000 -0.0070 16 6 5.6918 -6.4387 -0.0073 17 6 4.5871 -5.5888 -0.0061 18 6 3.2110 -6.1047 -0.0059 19 8 2.9848 -7.3007 -0.0075 20 7 2.2046 -5.1996 -0.0041 21 6 0.8133 -5.6583 -0.0044 22 6 0.2832 -5.6800 1.4307 23 6 1.0081 -6.7711 2.2454 24 6 -0.0927 -7.3504 3.1683 25 6 -1.3418 -7.3497 2.2526 26 6 -1.2109 -6.0479 1.4352 27 1 -0.4850 0.8400 0.0004 28 1 6.2336 -2.6034 -0.0025 29 1 8.1449 -4.1195 -0.0001 30 1 7.8192 -6.5542 -0.0083 31 1 5.5548 -7.5100 -0.0085 32 1 0.2072 -4.9804 -0.6053 33 1 0.7618 -6.6623 -0.4259 34 1 0.4293 -4.7058 1.8972 35 1 1.3980 -7.5451 1.5843 36 1 1.8118 -6.3340 2.8380 37 1 -0.2484 -6.7074 4.0346 38 1 0.1580 -8.3647 3.4789 39 1 -2.2532 -7.3348 2.8503 40 1 -1.3338 -8.2170 1.5923 41 1 -1.7898 -5.2525 1.9046 42 1 -1.5586 -6.2101 0.4150 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002179070.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:02 Heat of formation + Delta-G solvation = -10.159305 kcal Electronic energy + Delta-G solvation = -25991.421768 eV Core-core repulsion = 22447.329233 eV Total energy + Delta-G solvation = -3544.092536 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.114 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.01715 -38.60674 -37.51771 -36.72479 -33.87385 -32.85995 -31.06531 -29.79683 -29.37581 -28.51546 -25.88247 -25.36562 -24.37971 -22.91035 -21.46312 -20.55610 -19.60074 -19.03949 -18.19753 -17.60662 -16.88599 -15.78860 -15.53496 -15.24299 -15.12680 -14.90242 -14.52049 -14.34601 -13.97936 -13.51685 -13.47422 -13.22777 -13.11413 -12.81747 -12.26706 -11.96704 -11.75793 -11.51970 -11.31220 -11.28013 -11.20876 -11.11584 -10.99720 -10.91209 -10.77286 -10.55118 -10.37412 -10.27014 -9.67179 -9.55134 -9.40403 -9.10441 -8.99134 -8.78966 -8.01594 -6.92080 -6.68001 -4.42391 1.01897 1.26622 2.29717 2.72802 3.06295 3.09138 3.12959 3.20610 3.21874 3.83557 4.46617 4.62918 4.69931 4.74606 4.80001 4.80848 4.87342 5.08324 5.16874 5.28550 5.30538 5.43576 5.57830 5.58799 5.62337 5.71575 5.77552 5.80018 5.89105 5.92815 5.96421 6.01312 6.10752 6.19346 6.29299 6.38837 6.43431 6.51077 6.51555 6.64546 6.75465 6.77700 7.10200 7.23743 7.40915 8.18109 8.28012 8.58659 8.86311 10.39195 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.008264 B = 0.006071 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3387.209998 B = 4610.859463 C = 7576.302283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.077 3.923 3 Si 0.933 3.067 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.539 4.539 8 H 0.119 0.881 9 S 0.177 5.823 10 C 0.330 3.670 11 N -0.543 5.543 12 C 0.203 3.797 13 C -0.135 4.135 14 C -0.069 4.069 15 C -0.180 4.180 16 C -0.030 4.030 17 C -0.236 4.236 18 C 0.557 3.443 19 O -0.533 6.533 20 N -0.531 5.531 21 C 0.099 3.901 22 C -0.109 4.109 23 C -0.124 4.124 24 C -0.123 4.123 25 C -0.122 4.122 26 C -0.114 4.114 27 H 0.277 0.723 28 H 0.131 0.869 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.126 0.874 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.288 -9.562 2.133 10.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.133 4.133 3 Si 0.758 3.242 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.687 4.687 8 H 0.136 0.864 9 S 0.421 5.579 10 C -0.035 4.035 11 N -0.271 5.271 12 C 0.082 3.918 13 C -0.157 4.157 14 C -0.089 4.089 15 C -0.200 4.200 16 C -0.049 4.049 17 C -0.246 4.246 18 C 0.351 3.649 19 O -0.411 6.411 20 N -0.255 5.255 21 C -0.023 4.023 22 C -0.128 4.128 23 C -0.162 4.162 24 C -0.160 4.160 25 C -0.160 4.160 26 C -0.152 4.152 27 H 0.087 0.913 28 H 0.149 0.851 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.144 0.856 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.810 -9.441 2.117 9.710 hybrid contribution 1.758 0.470 -0.023 1.820 sum 2.568 -8.972 2.094 9.564 Atomic orbital electron populations 1.69901 1.06263 1.28882 1.45306 1.25196 0.95170 1.00005 0.92961 0.85855 0.80231 0.80043 0.78069 1.18677 1.20249 1.20248 1.23699 0.98163 0.89024 1.57846 0.86372 1.83631 0.99160 0.96548 1.78580 1.26267 1.00022 0.85264 0.91970 1.69098 0.95183 1.33101 1.29723 1.18924 0.93580 0.88310 0.90990 1.20531 0.89950 1.00382 1.04833 1.20851 0.98500 0.93366 0.96166 1.20877 0.96451 0.95103 1.07578 1.20854 0.91173 0.99181 0.93737 1.20484 0.93077 0.94803 1.16215 1.18338 0.85091 0.85582 0.75928 1.90741 1.84870 1.14292 1.51165 1.46419 1.08834 1.05864 1.64340 1.22120 0.79616 1.02221 0.98379 1.22165 0.95247 1.00692 0.94714 1.22550 0.97299 0.98200 0.98141 1.22469 0.95225 1.00416 0.97928 1.22342 0.97825 0.97786 0.98050 1.22097 0.94954 0.97587 1.00601 0.91317 0.85100 0.86021 0.86172 0.85607 0.88637 0.88463 0.89485 0.89999 0.92579 0.91737 0.91972 0.91904 0.91788 0.91057 0.91452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.42 13.22 55.49 0.73 -21.69 16 2 C 0.08 1.93 5.49 -17.47 -0.10 1.84 16 3 Si 0.93 19.72 29.55 -169.99 -5.02 14.69 16 4 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.54 -13.72 9.23 30.94 0.29 -13.43 16 8 H 0.12 3.09 6.48 -52.49 -0.34 2.75 16 9 S 0.18 3.95 18.84 -107.50 -2.03 1.93 16 10 C 0.33 7.05 7.73 -88.50 -0.68 6.37 16 11 N -0.54 -12.11 8.28 -10.89 -0.09 -12.20 16 12 C 0.20 4.08 6.62 -84.78 -0.56 3.52 16 13 C -0.14 -2.33 9.98 -39.58 -0.40 -2.72 16 14 C -0.07 -0.97 9.95 -39.92 -0.40 -1.37 16 15 C -0.18 -2.50 10.02 -39.50 -0.40 -2.90 16 16 C -0.03 -0.49 9.68 -39.32 -0.38 -0.87 16 17 C -0.24 -4.55 5.90 -104.74 -0.62 -5.17 16 18 C 0.56 10.99 7.14 -12.47 -0.09 10.90 16 19 O -0.53 -10.69 14.38 5.17 0.07 -10.62 16 20 N -0.53 -10.16 2.54 -117.38 -0.30 -10.45 16 21 C 0.10 1.60 4.05 -4.04 -0.02 1.58 16 22 C -0.11 -1.62 3.01 -89.51 -0.27 -1.89 16 23 C -0.12 -1.84 5.63 -25.08 -0.14 -1.98 16 24 C -0.12 -1.49 6.91 -24.74 -0.17 -1.66 16 25 C -0.12 -1.35 6.83 -25.07 -0.17 -1.53 16 26 C -0.11 -1.40 6.46 -25.61 -0.17 -1.57 16 27 H 0.28 6.66 8.31 -40.82 -0.34 6.32 16 28 H 0.13 2.15 8.06 -52.49 -0.42 1.73 16 29 H 0.12 1.31 8.06 -52.48 -0.42 0.88 16 30 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 31 H 0.13 1.91 7.83 -52.49 -0.41 1.49 16 32 H 0.10 1.49 6.77 -51.93 -0.35 1.14 16 33 H 0.10 1.51 7.17 -51.92 -0.37 1.13 16 34 H 0.09 1.46 7.45 -51.93 -0.39 1.07 16 35 H 0.08 1.33 5.93 -51.93 -0.31 1.02 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.07 0.76 7.67 -51.93 -0.40 0.36 16 LS Contribution 353.39 15.07 5.33 5.33 Total: -1.00 -27.92 353.39 -11.08 -38.99 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -5.51 Total: 4.89 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -4.27 Total: -10.87 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: 0.35 Total: -44.34 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.07 Total: -10.62 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.69 kcal Atomic # 16 Polarization: 3.95 SS G_CDS: -2.03 Total: 1.93 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -27.92 -11.08 -38.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002179070.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.835 kcal (2) G-P(sol) polarization free energy of solvation -27.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds