Wall clock time and date at job start Tue Mar 31 2020 04:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38311 * 119.91882 * 2 1 4 4 C 1.38080 * 120.07528 * 180.29612 * 3 2 1 5 5 C 1.38965 * 119.92179 * 359.45238 * 4 3 2 6 6 N 1.39745 * 120.08152 * 180.29460 * 5 4 3 7 7 C 1.37177 * 120.00408 * 172.18444 * 6 5 4 8 8 H 1.07995 * 119.99916 * 305.49151 * 7 6 5 9 9 C 1.38838 * 119.99934 * 125.48106 * 7 6 5 10 10 N 1.31481 * 119.99509 * 166.66458 * 9 7 6 11 11 Si 1.86794 * 120.00047 * 346.66961 * 9 7 6 12 12 H 1.48499 * 109.47122 * 95.33362 * 11 9 7 13 13 H 1.48505 * 109.47068 * 215.33410 * 11 9 7 14 14 H 1.48502 * 109.47152 * 335.33195 * 11 9 7 15 15 C 1.34774 * 119.99964 * 352.18676 * 6 5 4 16 16 O 1.21575 * 120.00257 * 3.03446 * 15 6 5 17 17 N 1.34781 * 120.00176 * 183.03196 * 15 6 5 18 18 C 1.39948 * 119.99916 * 187.06962 * 17 15 6 19 19 C 1.38875 * 120.05618 * 35.87184 * 18 17 15 20 20 C 1.38117 * 119.93576 * 179.74274 * 19 18 17 21 21 C 1.38378 * 120.06234 * 0.50273 * 20 19 18 22 22 Cl 1.73598 * 119.94531 * 179.74565 * 21 20 19 23 23 C 1.38393 * 120.11267 * 359.77072 * 21 20 19 24 24 C 1.38106 * 120.06155 * 359.97367 * 23 21 20 25 25 C 1.38976 * 119.84419 * 0.27469 * 5 4 3 26 26 C 1.38079 * 119.91837 * 359.97438 * 25 5 4 27 27 H 1.08998 * 109.47381 * 270.25306 * 1 2 3 28 28 H 1.08999 * 109.46995 * 30.25486 * 1 2 3 29 29 H 1.09000 * 109.46920 * 150.25258 * 1 2 3 30 30 H 1.07997 * 119.96334 * 0.02613 * 3 2 1 31 31 H 1.08008 * 120.03684 * 179.72139 * 4 3 2 32 32 H 0.96998 * 119.99054 * 180.02562 * 10 9 7 33 33 H 0.96998 * 119.99653 * 7.07064 * 17 15 6 34 34 H 1.07996 * 120.03583 * 359.96962 * 19 18 17 35 35 H 1.07999 * 119.96726 * 180.25126 * 20 19 18 36 36 H 1.08002 * 119.96628 * 179.97438 * 23 21 20 37 37 H 1.07990 * 120.02976 * 179.97438 * 24 23 21 38 38 H 1.08001 * 120.04430 * 180.02562 * 25 5 4 39 39 H 1.08000 * 119.96442 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1969 1.1988 0.0000 4 6 3.5777 1.2026 -0.0062 5 6 4.2742 0.0001 -0.0009 6 7 5.6717 0.0000 -0.0009 7 6 6.3576 -1.1762 0.1658 8 1 6.1574 -1.8011 1.0235 9 6 7.3091 -1.5633 -0.7682 10 7 8.1461 -2.5379 -0.4886 11 14 7.4001 -0.6993 -2.4219 12 1 8.4217 0.3768 -2.3626 13 1 7.7743 -1.6798 -3.4726 14 1 6.0767 -0.1083 -2.7451 15 6 6.3455 1.1557 -0.1647 16 8 5.7390 2.2052 -0.2571 17 7 7.6919 1.1478 -0.2259 18 6 8.3985 2.3557 -0.2469 19 6 7.9420 3.4414 0.4890 20 6 8.6441 4.6306 0.4707 21 6 9.7957 4.7441 -0.2881 22 17 10.6722 6.2423 -0.3141 23 6 10.2496 3.6654 -1.0268 24 6 9.5542 2.4723 -1.0079 25 6 3.5777 -1.2026 0.0048 26 6 2.1970 -1.1988 0.0058 27 1 -0.3634 0.0045 1.0276 28 1 -0.3633 0.8877 -0.5178 29 1 -0.3633 -0.8923 -0.5099 30 1 1.6550 2.1330 0.0004 31 1 4.1158 2.1391 -0.0107 32 1 8.8111 -2.8080 -1.1411 33 1 8.1711 0.3050 -0.2555 34 1 7.0409 3.3548 1.0779 35 1 8.2918 5.4740 1.0460 36 1 11.1485 3.7567 -1.6185 37 1 9.9087 1.6310 -1.5848 38 1 4.1158 -2.1390 0.0094 39 1 1.6550 -2.1329 0.0106 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003269748.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:27 Heat of formation + Delta-G solvation = 45.536931 kcal Electronic energy + Delta-G solvation = -25410.027747 eV Core-core repulsion = 21730.473581 eV Total energy + Delta-G solvation = -3679.554166 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.78638 -39.15319 -37.94513 -36.40727 -35.43222 -34.46316 -32.54643 -31.11721 -30.92824 -30.16071 -28.87862 -26.19749 -25.02358 -22.98294 -22.61322 -21.95696 -20.80882 -19.89328 -18.73427 -17.65973 -16.85070 -16.38432 -15.86069 -15.50480 -14.98516 -14.56530 -14.40980 -14.25754 -14.01610 -13.58840 -13.34314 -13.30842 -13.25947 -13.05254 -12.80559 -12.55137 -12.16843 -12.00794 -11.74346 -11.60872 -11.44405 -11.26498 -11.09219 -10.96181 -10.73128 -10.43197 -10.39079 -9.72750 -9.53013 -9.05759 -8.96789 -8.72258 -8.20765 -7.79096 -7.03096 -6.81932 -4.70411 1.27968 1.45728 2.04311 2.16071 2.24592 2.82384 2.97416 3.09759 3.27737 3.53721 3.77120 3.97732 4.37886 4.64666 4.78460 4.95728 5.01182 5.42355 5.43340 5.44901 5.54136 5.67400 5.72641 5.78212 5.88585 6.05985 6.09419 6.14846 6.27776 6.39529 6.42394 6.47248 6.52399 6.67012 6.77392 7.04493 7.10854 7.19710 7.34728 7.36703 7.50220 7.67776 7.97677 8.10296 8.58338 8.96799 9.30630 10.22313 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.013907 B = 0.003967 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.849907 B = 7056.830427 C = 8631.325035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.143 4.143 3 C -0.105 4.105 4 C -0.182 4.182 5 C 0.175 3.825 6 N -0.422 5.422 7 C -0.359 4.359 8 H 0.113 0.887 9 C 0.060 3.940 10 N -0.846 5.846 11 Si 0.855 3.145 12 H -0.257 1.257 13 H -0.277 1.277 14 H -0.258 1.258 15 C 0.689 3.311 16 O -0.583 6.583 17 N -0.678 5.678 18 C 0.192 3.808 19 C -0.111 4.111 20 C -0.089 4.089 21 C -0.064 4.064 22 Cl -0.085 7.085 23 C -0.089 4.089 24 C -0.144 4.144 25 C -0.142 4.142 26 C -0.105 4.105 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.111 0.889 31 H 0.179 0.821 32 H 0.283 0.717 33 H 0.423 0.577 34 H 0.144 0.856 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.478 7.875 -0.032 7.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.144 4.144 3 C -0.124 4.124 4 C -0.202 4.202 5 C 0.078 3.922 6 N -0.133 5.133 7 C -0.487 4.487 8 H 0.130 0.870 9 C -0.149 4.149 10 N -0.479 5.479 11 Si 0.679 3.321 12 H -0.182 1.182 13 H -0.203 1.203 14 H -0.181 1.181 15 C 0.395 3.605 16 O -0.465 6.465 17 N -0.330 5.330 18 C 0.094 3.906 19 C -0.132 4.132 20 C -0.109 4.109 21 C -0.091 4.091 22 Cl -0.057 7.057 23 C -0.108 4.108 24 C -0.165 4.165 25 C -0.163 4.163 26 C -0.124 4.124 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.129 0.871 31 H 0.195 0.805 32 H 0.093 0.907 33 H 0.267 0.733 34 H 0.162 0.838 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.584 8.455 -0.124 8.476 hybrid contribution 0.458 -0.382 -0.991 1.156 sum -0.126 8.073 -1.114 8.151 Atomic orbital electron populations 1.20627 0.92330 1.01643 1.01204 1.19722 0.95214 0.93591 1.05901 1.20858 0.94025 0.96604 1.00912 1.22731 0.94200 1.00415 1.02887 1.18305 0.82894 0.94015 0.97016 1.40593 1.02568 1.06094 1.64049 1.19116 1.19600 0.99514 1.10443 0.87003 1.25679 0.95674 0.95922 0.97619 1.69692 1.16080 1.26467 1.35656 0.87181 0.81079 0.79923 0.83868 1.18184 1.20250 1.18124 1.16073 0.81383 0.84200 0.78885 1.90466 1.65713 1.31360 1.58962 1.43384 1.05833 1.08317 1.75454 1.17720 0.91963 0.86755 0.94148 1.21156 1.00918 0.91922 0.99226 1.20862 0.93312 0.98089 0.98600 1.20766 0.96452 0.87855 1.04026 1.98334 1.76055 1.33362 1.97925 1.20731 1.00032 0.91156 0.98877 1.20967 0.96962 0.98476 1.00132 1.20915 0.93458 0.97686 1.04244 1.20685 0.93480 0.96845 1.01345 0.92291 0.92469 0.92450 0.87088 0.80480 0.90661 0.73299 0.83841 0.84946 0.84950 0.84843 0.84878 0.86868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.28 10.01 36.01 0.36 -0.92 16 2 C -0.14 -2.39 5.88 -104.56 -0.62 -3.00 16 3 C -0.11 -1.88 9.69 -39.61 -0.38 -2.27 16 4 C -0.18 -3.81 9.03 -39.37 -0.36 -4.17 16 5 C 0.17 3.91 6.46 -83.71 -0.54 3.37 16 6 N -0.42 -9.89 2.17 -63.91 -0.14 -10.03 16 7 C -0.36 -8.76 7.80 -14.94 -0.12 -8.88 16 8 H 0.11 2.90 8.03 -52.49 -0.42 2.48 16 9 C 0.06 1.45 4.11 -17.48 -0.07 1.38 16 10 N -0.85 -20.99 13.96 55.49 0.77 -20.21 16 11 Si 0.86 19.01 24.61 -169.99 -4.18 14.83 16 12 H -0.26 -5.25 5.16 56.52 0.29 -4.96 16 13 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 14 H -0.26 -6.29 7.11 56.52 0.40 -5.89 16 15 C 0.69 15.71 6.22 -86.92 -0.54 15.17 16 16 O -0.58 -13.40 10.69 5.30 0.06 -13.34 16 17 N -0.68 -14.20 3.23 -14.22 -0.05 -14.24 16 18 C 0.19 3.53 6.22 -83.68 -0.52 3.01 16 19 C -0.11 -1.90 8.65 -39.39 -0.34 -2.24 16 20 C -0.09 -1.29 9.82 -39.57 -0.39 -1.68 16 21 C -0.06 -0.89 6.32 -39.47 -0.25 -1.14 16 22 Cl -0.09 -1.04 28.95 -51.86 -1.50 -2.54 16 23 C -0.09 -1.24 9.82 -39.57 -0.39 -1.62 16 24 C -0.14 -2.32 9.63 -39.40 -0.38 -2.70 16 25 C -0.14 -2.91 9.31 -39.37 -0.37 -3.28 16 26 C -0.10 -1.84 9.69 -39.61 -0.38 -2.22 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 29 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 30 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 31 H 0.18 3.88 4.56 -56.09 -0.26 3.62 16 32 H 0.28 6.52 8.31 -40.82 -0.34 6.18 16 33 H 0.42 9.04 4.72 -40.82 -0.19 8.85 16 34 H 0.14 2.56 6.66 -52.49 -0.35 2.21 16 35 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 36 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 37 H 0.13 2.06 7.04 -52.49 -0.37 1.69 16 38 H 0.13 2.77 7.01 -52.49 -0.37 2.40 16 39 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 334.51 15.07 5.04 5.04 Total: -1.00 -25.82 334.51 -9.43 -35.25 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: -4.16 Total: 16.43 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: -5.28 Total: -11.19 kcal Atomic # 7 Polarization: -45.07 SS G_CDS: 0.59 Total: -44.48 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.06 Total: -13.34 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -4.18 Total: 14.83 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -1.50 Total: -2.54 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -25.82 -9.43 -35.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003269748.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.789 kcal (2) G-P(sol) polarization free energy of solvation -25.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds