Wall clock time and date at job start Tue Mar 31 2020 04:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47193 * 2 1 4 4 N 1.46496 * 109.47201 * 179.97438 * 3 2 1 5 5 C 1.38237 * 119.50946 * 270.25069 * 4 3 2 6 6 N 1.31507 * 131.73268 * 359.94110 * 5 4 3 7 7 N 1.28502 * 110.11182 * 180.29495 * 6 5 4 8 8 C 1.31348 * 110.04855 * 359.97438 * 7 6 5 9 9 S 1.76196 * 126.54090 * 180.02562 * 8 7 6 10 10 C 1.76203 * 99.99850 * 359.97438 * 9 8 7 11 11 H 1.07997 * 120.00023 * 0.02562 * 10 9 8 12 12 C 1.38561 * 119.99916 * 179.97438 * 10 9 8 13 13 N 1.31706 * 120.00220 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00011 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47073 * 90.00149 * 14 12 10 16 16 H 1.48497 * 109.47320 * 210.00593 * 14 12 10 17 17 H 1.48500 * 109.47123 * 330.00457 * 14 12 10 18 18 N 1.36800 * 121.36916 * 180.26756 * 5 4 3 19 19 C 1.38877 * 120.93234 * 359.74553 * 18 5 4 20 20 C 1.38662 * 121.31060 * 180.02562 * 19 18 5 21 21 C 1.38069 * 119.87828 * 179.97438 * 20 19 18 22 22 C 1.38613 * 120.58939 * 0.02562 * 21 20 19 23 23 C 1.37895 * 120.35059 * 359.97438 * 22 21 20 24 24 C 1.39355 * 119.61313 * 359.97438 * 23 22 21 25 25 C 1.34928 * 119.50502 * 89.99754 * 4 3 2 26 26 O 1.21633 * 120.54705 * 0.02562 * 25 4 3 27 27 H 1.09007 * 109.47429 * 300.00489 * 1 2 3 28 28 H 1.09005 * 109.47494 * 60.00063 * 1 2 3 29 29 H 1.09001 * 109.47448 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47168 * 239.99856 * 2 1 3 31 31 H 1.09002 * 109.47080 * 119.99311 * 2 1 3 32 32 H 1.08996 * 109.47181 * 59.99863 * 3 2 1 33 33 H 1.09002 * 109.46545 * 299.99639 * 3 2 1 34 34 H 0.96997 * 120.00211 * 179.97438 * 13 12 10 35 35 H 1.08007 * 120.06422 * 359.95476 * 20 19 18 36 36 H 1.07996 * 119.70517 * 180.02562 * 21 20 19 37 37 H 1.08000 * 119.82084 * 179.97438 * 22 21 20 38 38 H 1.08004 * 120.19176 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1854 1.4375 1.2039 6 7 3.7619 1.4332 2.4490 7 7 4.7621 1.4355 3.2558 8 6 5.8873 1.4408 2.5782 9 16 7.5163 1.4451 3.2497 10 6 7.1378 1.4409 4.9706 11 1 6.1084 1.4366 5.2971 12 6 8.1610 1.4422 5.9050 13 7 9.4164 1.4470 5.5068 14 14 7.7598 1.4385 7.7294 15 1 7.6571 0.0375 8.2108 16 1 8.8357 2.1404 8.4743 17 1 6.4674 2.1348 7.9534 18 7 5.5526 1.4427 1.2489 19 6 6.3053 1.4481 0.0818 20 6 7.6914 1.4529 0.1183 21 6 8.4104 1.4577 -1.0604 22 6 7.7591 1.4582 -2.2840 23 6 6.3813 1.4535 -2.3399 24 6 5.6441 1.4476 -1.1573 25 6 4.1700 1.4423 -1.1734 26 8 3.5632 1.4426 -2.2276 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 1.6767 1.9564 0.8899 33 1 1.6767 1.9563 -0.8901 34 1 10.1326 1.4483 6.1609 35 1 8.2077 1.4533 1.0669 36 1 9.4899 1.4610 -1.0287 37 1 8.3339 1.4624 -3.1983 38 1 5.8765 1.4543 -3.2947 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003375604.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:48 Heat of formation + Delta-G solvation = 76.220590 kcal Electronic energy + Delta-G solvation = -25390.721323 eV Core-core repulsion = 21746.834157 eV Total energy + Delta-G solvation = -3643.887166 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 330.089 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.00241 -40.42266 -38.86160 -36.46466 -35.05935 -33.35468 -32.80940 -31.42818 -29.87529 -29.49832 -27.01904 -25.85578 -24.28748 -23.96127 -22.79226 -21.72307 -21.34410 -19.55852 -19.06118 -18.20415 -16.88883 -16.77065 -16.62639 -15.84433 -15.31590 -15.07176 -15.04767 -14.89821 -14.63230 -14.29373 -14.05061 -13.69379 -13.17184 -13.04064 -12.40580 -12.27862 -12.20569 -11.79281 -11.67901 -11.49048 -11.25226 -11.17368 -11.15291 -10.96014 -10.83328 -10.68182 -10.62681 -10.31517 -10.08478 -9.53070 -9.31176 -9.02821 -8.75747 -8.43112 -6.91696 -6.62157 -4.38092 0.47702 0.85853 1.84007 1.99338 2.39759 2.58169 2.91660 3.11668 3.16231 3.24166 3.26893 3.68931 3.84296 4.01410 4.29820 4.63586 4.70391 4.80685 4.83010 4.87677 4.93282 5.02548 5.06897 5.20462 5.30813 5.33153 5.50889 5.60344 5.63226 5.71892 5.80782 5.90800 6.02377 6.06033 6.18264 6.23858 6.27383 6.34371 6.48903 6.72794 7.19375 7.42772 7.68835 8.21610 8.89782 9.05644 10.45415 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.012776 B = 0.004416 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.137920 B = 6338.766235 C = 8397.096638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.139 4.139 3 C 0.116 3.884 4 N -0.502 5.502 5 C 0.366 3.634 6 N -0.280 5.280 7 N -0.276 5.276 8 C 0.175 3.825 9 S 0.166 5.834 10 C -0.541 4.541 11 H 0.108 0.892 12 C 0.079 3.921 13 N -0.875 5.875 14 Si 0.934 3.066 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.264 1.264 18 N -0.436 5.436 19 C 0.188 3.812 20 C -0.139 4.139 21 C -0.054 4.054 22 C -0.144 4.144 23 C -0.029 4.029 24 C -0.171 4.171 25 C 0.569 3.431 26 O -0.513 6.513 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.277 0.723 35 H 0.154 0.846 36 H 0.142 0.858 37 H 0.138 0.862 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.662 -0.615 -14.385 15.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.178 4.178 3 C -0.005 4.005 4 N -0.230 5.230 5 C 0.009 3.991 6 N -0.125 5.125 7 N -0.120 5.120 8 C -0.193 4.193 9 S 0.402 5.598 10 C -0.689 4.689 11 H 0.126 0.874 12 C -0.131 4.131 13 N -0.510 5.510 14 Si 0.759 3.241 15 H -0.198 1.198 16 H -0.205 1.205 17 H -0.189 1.189 18 N -0.131 5.131 19 C 0.089 3.911 20 C -0.160 4.160 21 C -0.073 4.073 22 C -0.163 4.163 23 C -0.048 4.048 24 C -0.177 4.177 25 C 0.359 3.641 26 O -0.388 6.388 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.087 0.913 35 H 0.171 0.829 36 H 0.160 0.840 37 H 0.156 0.844 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.728 -0.598 -14.052 14.838 hybrid contribution -0.443 -0.040 0.731 0.856 sum -5.171 -0.638 -13.321 14.304 Atomic orbital electron populations 1.21649 0.94418 1.02131 1.02095 1.21855 0.96740 0.96167 1.02990 1.21852 0.75069 0.98785 1.04792 1.44331 1.08310 1.69204 1.01201 1.21299 0.79533 1.08540 0.89720 1.74403 1.23137 1.21193 0.93797 1.74794 0.93045 1.22295 1.21844 1.28264 1.06319 1.05723 0.79035 1.83262 0.86341 1.84493 1.05714 1.23356 0.98077 1.58981 0.88518 0.87384 1.25079 0.94078 0.93066 1.00906 1.69949 0.98910 1.46115 1.35992 0.85882 0.78740 0.78870 0.80579 1.19770 1.20536 1.18860 1.43534 1.06009 1.57896 1.05630 1.17890 0.91982 0.97933 0.83249 1.21245 0.90727 1.02823 1.01236 1.21334 1.00869 0.93967 0.91095 1.21223 0.93877 1.02734 0.98468 1.20997 0.93656 0.93584 0.96601 1.19472 0.92525 1.12904 0.92809 1.18026 0.87260 0.76259 0.82525 1.90808 1.69621 1.49724 1.28620 0.92165 0.92489 0.92272 0.91595 0.91073 0.88478 0.88507 0.91346 0.82869 0.84002 0.84422 0.83679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.91 37.16 0.37 -1.02 16 2 C -0.14 -1.72 6.26 -26.73 -0.17 -1.88 16 3 C 0.12 1.57 5.32 -4.04 -0.02 1.55 16 4 N -0.50 -8.35 2.66 -117.77 -0.31 -8.66 16 5 C 0.37 7.19 8.29 -318.53 -2.64 4.55 16 6 N -0.28 -6.11 11.98 30.36 0.36 -5.74 16 7 N -0.28 -6.67 11.03 30.79 0.34 -6.33 16 8 C 0.17 3.98 8.12 -87.78 -0.71 3.26 16 9 S 0.17 3.90 18.90 -107.50 -2.03 1.87 16 10 C -0.54 -14.35 9.37 30.85 0.29 -14.06 16 11 H 0.11 2.96 6.93 -52.49 -0.36 2.59 16 12 C 0.08 2.03 5.49 -17.49 -0.10 1.93 16 13 N -0.88 -23.06 13.22 55.48 0.73 -22.33 16 14 Si 0.93 20.30 29.55 -169.99 -5.02 15.28 16 15 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 16 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 17 H -0.26 -5.77 7.11 56.52 0.40 -5.37 16 18 N -0.44 -8.75 3.03 -61.17 -0.19 -8.94 16 19 C 0.19 3.20 6.65 -83.68 -0.56 2.64 16 20 C -0.14 -2.07 9.57 -39.49 -0.38 -2.45 16 21 C -0.05 -0.59 10.02 -39.50 -0.40 -0.98 16 22 C -0.14 -1.39 10.03 -39.57 -0.40 -1.79 16 23 C -0.03 -0.34 9.64 -39.29 -0.38 -0.72 16 24 C -0.17 -2.61 5.88 -104.91 -0.62 -3.22 16 25 C 0.57 9.26 7.64 -12.45 -0.10 9.16 16 26 O -0.51 -8.53 16.09 5.25 0.08 -8.45 16 27 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.10 1.29 7.88 -51.93 -0.41 0.89 16 33 H 0.10 1.19 7.41 -51.93 -0.38 0.81 16 34 H 0.28 6.80 8.31 -40.82 -0.34 6.46 16 35 H 0.15 2.52 5.00 -45.14 -0.23 2.29 16 36 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 37 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 38 H 0.15 1.47 7.76 -52.48 -0.41 1.06 16 LS Contribution 340.08 15.07 5.12 5.12 Total: -1.00 -30.36 340.08 -10.59 -40.95 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -3.88 Total: 0.24 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -5.80 Total: -3.02 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: 0.94 Total: -52.00 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.08 Total: -8.45 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 16 Polarization: 3.90 SS G_CDS: -2.03 Total: 1.87 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.36 -10.59 -40.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003375604.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.175 kcal (2) G-P(sol) polarization free energy of solvation -30.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds