Wall clock time and date at job start Tue Mar 31 2020 05:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30497 * 125.65357 * 2 1 4 4 C 1.34127 * 109.26073 * 179.97438 * 3 2 1 5 5 C 1.34669 * 108.01624 * 359.73645 * 4 3 2 6 6 N 1.48035 * 126.59059 * 180.26411 * 5 4 3 7 7 O 1.21804 * 120.00133 * 180.19054 * 6 5 4 8 8 O 1.21800 * 119.99981 * 0.18123 * 6 5 4 9 9 N 1.35045 * 125.64787 * 180.02562 * 2 1 3 10 10 C 1.46494 * 126.39700 * 359.97438 * 9 2 1 11 11 C 1.50700 * 109.47142 * 90.00122 * 10 9 2 12 12 O 1.21290 * 119.99846 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00426 * 180.27443 * 11 10 9 14 14 C 1.39239 * 120.00570 * 175.43070 * 13 11 10 15 15 C 1.39477 * 119.83614 * 215.01610 * 14 13 11 16 16 C 1.36373 * 120.17006 * 179.71638 * 15 14 13 17 17 C 1.40880 * 119.82631 * 0.57915 * 16 15 14 18 18 C 1.41150 * 120.16389 * 179.67723 * 17 16 15 19 19 H 1.07996 * 119.99589 * 214.80171 * 18 17 16 20 20 C 1.39908 * 119.99877 * 34.79882 * 18 17 16 21 21 N 1.30865 * 120.00091 * 355.55844 * 20 18 17 22 22 Si 1.86804 * 119.99594 * 175.56112 * 20 18 17 23 23 H 1.48499 * 109.47026 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47132 * 120.00182 * 22 20 18 25 25 H 1.48502 * 109.46965 * 239.99837 * 22 20 18 26 26 C 1.40870 * 119.66740 * 359.69618 * 17 16 15 27 27 C 1.36368 * 119.83276 * 359.97438 * 26 17 16 28 28 H 1.09008 * 109.46891 * 270.00145 * 1 2 3 29 29 H 1.09008 * 109.47163 * 29.99603 * 1 2 3 30 30 H 1.09000 * 109.47263 * 149.99820 * 1 2 3 31 31 H 1.07997 * 125.98896 * 179.97438 * 4 3 2 32 32 H 1.08997 * 109.47675 * 329.99833 * 10 9 2 33 33 H 1.09000 * 109.47374 * 210.00105 * 10 9 2 34 34 H 0.97006 * 119.99556 * 355.43441 * 13 11 10 35 35 H 1.07997 * 119.91354 * 359.97438 * 15 14 13 36 36 H 1.08000 * 120.08964 * 180.24990 * 16 15 14 37 37 H 0.97003 * 119.99530 * 179.97438 * 21 20 18 38 38 H 1.08005 * 120.08156 * 179.97438 * 26 17 16 39 39 H 1.07997 * 119.91596 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5544 0.6818 0.0006 5 6 3.5925 -0.6643 0.0068 6 7 4.8056 -1.5127 0.0151 7 8 4.7002 -2.7262 0.0167 8 8 5.9092 -0.9973 0.0202 9 7 2.2940 -1.0974 -0.0005 10 6 1.8424 -2.4910 -0.0006 11 6 1.6871 -2.9686 -1.4214 12 8 1.9293 -2.2185 -2.3433 13 7 1.2732 -4.2273 -1.6679 14 6 1.0382 -4.6393 -2.9770 15 6 0.0057 -5.5372 -3.2471 16 6 -0.2342 -5.9408 -4.5275 17 6 0.5719 -5.4578 -5.5771 18 6 0.3343 -5.8760 -6.9041 19 1 1.1621 -6.0088 -7.5848 20 6 -0.9737 -6.1187 -7.3374 21 7 -1.9684 -6.0426 -6.4904 22 14 -1.3001 -6.5516 -9.1251 23 1 -0.0165 -6.5725 -9.8716 24 1 -1.9397 -7.8895 -9.2015 25 1 -2.2036 -5.5361 -9.7232 26 6 1.6165 -4.5555 -5.2955 27 6 1.8399 -4.1559 -4.0110 28 1 -0.3633 0.0000 1.0278 29 1 -0.3634 0.8901 -0.5138 30 1 -0.3634 -0.8900 -0.5139 31 1 4.4098 1.3410 0.0003 32 1 0.8840 -2.5625 0.5136 33 1 2.5772 -3.1111 0.5129 34 1 1.1390 -4.8463 -0.9331 35 1 -0.6080 -5.9107 -2.4408 36 1 -1.0366 -6.6330 -4.7357 37 1 -2.8752 -6.2105 -6.7910 38 1 2.2388 -4.1813 -6.0950 39 1 2.6406 -3.4646 -3.7936 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004625874.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:42 Heat of formation + Delta-G solvation = 57.173086 kcal Electronic energy + Delta-G solvation = -27394.460542 eV Core-core repulsion = 23306.994544 eV Total energy + Delta-G solvation = -4087.465998 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.116 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.32116 -41.85946 -39.93286 -37.50194 -36.79969 -34.82166 -34.50398 -33.09326 -32.71136 -29.86994 -29.56753 -28.99153 -27.96437 -25.61779 -24.96160 -22.28343 -22.04485 -21.28463 -20.78731 -20.10247 -19.08268 -18.67654 -18.09488 -17.52767 -17.25068 -17.01762 -16.33095 -15.66049 -15.44523 -15.26747 -14.51965 -14.07843 -14.00769 -13.94426 -13.40647 -13.18048 -12.97455 -12.78223 -12.75871 -12.25628 -11.83500 -11.78531 -11.56038 -11.49264 -11.35744 -11.27121 -11.09877 -10.89358 -10.84348 -10.76288 -10.13892 -9.67387 -9.60979 -9.42676 -9.25487 -9.06204 -7.68126 -7.02459 -6.73009 -4.45707 -0.13384 0.74720 1.48404 1.99920 2.24038 2.33056 2.80695 2.97705 3.04220 3.09178 3.14431 3.32970 3.71509 3.90396 4.07298 4.09854 4.51803 4.57675 4.63715 4.66533 4.91472 5.00152 5.29469 5.38340 5.50495 5.53373 6.04205 6.05197 6.29129 6.32135 6.53729 6.73615 6.93837 7.05104 7.09512 7.16240 7.46911 7.51007 7.54342 7.67367 7.93484 8.04860 8.18716 8.36464 8.54079 8.81684 8.86449 10.17952 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.020237 B = 0.002716 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.266895 B =10307.144211 C =10719.133298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.295 3.705 3 N -0.481 5.481 4 C 0.109 3.891 5 C 0.005 3.995 6 N 0.071 4.929 7 O -0.172 6.172 8 O -0.138 6.138 9 N -0.416 5.416 10 C 0.068 3.932 11 C 0.486 3.514 12 O -0.517 6.517 13 N -0.636 5.636 14 C -0.006 4.006 15 C -0.115 4.115 16 C -0.142 4.142 17 C 0.104 3.896 18 C -0.458 4.458 19 H 0.078 0.922 20 C 0.069 3.931 21 N -0.809 5.809 22 Si 0.917 3.083 23 H -0.261 1.261 24 H -0.274 1.274 25 H -0.274 1.274 26 C -0.206 4.206 27 C -0.080 4.080 28 H 0.096 0.904 29 H 0.107 0.893 30 H 0.086 0.914 31 H 0.201 0.799 32 H 0.132 0.868 33 H 0.138 0.862 34 H 0.399 0.601 35 H 0.093 0.907 36 H 0.134 0.866 37 H 0.278 0.722 38 H 0.097 0.903 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.705 6.840 15.731 17.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.032 3.968 3 N -0.200 5.200 4 C -0.047 4.047 5 C -0.191 4.191 6 N 0.589 4.411 7 O -0.382 6.382 8 O -0.354 6.354 9 N -0.100 5.100 10 C -0.058 4.058 11 C 0.269 3.731 12 O -0.392 6.392 13 N -0.278 5.278 14 C -0.098 4.098 15 C -0.135 4.135 16 C -0.162 4.162 17 C 0.101 3.899 18 C -0.489 4.489 19 H 0.096 0.904 20 C -0.146 4.146 21 N -0.436 5.436 22 Si 0.741 3.259 23 H -0.185 1.185 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.226 4.226 27 C -0.100 4.100 28 H 0.114 0.886 29 H 0.125 0.875 30 H 0.105 0.895 31 H 0.218 0.782 32 H 0.150 0.850 33 H 0.155 0.845 34 H 0.233 0.767 35 H 0.111 0.889 36 H 0.151 0.849 37 H 0.089 0.911 38 H 0.115 0.885 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.723 8.323 15.069 17.230 hybrid contribution 0.315 -1.587 -0.457 1.681 sum 1.038 6.736 14.612 16.123 Atomic orbital electron populations 1.20520 0.82710 1.06073 1.04602 1.23758 0.96313 0.79803 0.96901 1.70739 1.00401 1.27130 1.21772 1.22509 0.96470 0.89130 0.96633 1.21571 0.79937 0.91190 1.26431 1.42241 1.00708 1.00651 0.97538 1.94551 1.93298 0.95691 1.54678 1.94576 1.09932 1.77311 1.53602 1.44523 1.03684 1.08315 1.53459 1.22169 1.05126 0.79765 0.98743 1.20236 0.79938 0.83078 0.89803 1.90785 1.48958 1.54765 1.44736 1.42779 1.65419 1.10945 1.08700 1.17193 1.02345 1.08195 0.82094 1.20281 0.95963 0.99997 0.97260 1.21203 1.02465 1.02428 0.90121 1.17754 0.90193 0.88514 0.93429 1.19584 0.92998 1.39659 0.96614 0.90403 1.25904 0.95956 0.92654 1.00077 1.69758 1.00623 1.37530 1.35698 0.86120 0.79347 0.78588 0.81816 1.18498 1.19885 1.19908 1.20814 1.04045 1.02814 0.94962 1.20363 0.97756 0.99291 0.92593 0.88558 0.87458 0.89474 0.78198 0.84976 0.84461 0.76698 0.88921 0.84878 0.91074 0.88522 0.87788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 9.98 36.01 0.36 -0.24 16 2 C 0.29 3.34 7.90 -155.42 -1.23 2.11 16 3 N -0.48 -5.98 11.25 -10.82 -0.12 -6.10 16 4 C 0.11 1.31 11.57 -17.81 -0.21 1.10 16 5 C 0.00 0.06 7.96 -143.11 -1.14 -1.08 16 6 N 0.07 1.05 4.46 33.10 0.15 1.20 16 7 O -0.17 -2.66 16.96 -29.46 -0.50 -3.16 16 8 O -0.14 -2.01 19.04 -29.46 -0.56 -2.58 16 9 N -0.42 -5.09 2.24 -111.61 -0.25 -5.34 16 10 C 0.07 0.71 5.73 -5.20 -0.03 0.68 16 11 C 0.49 7.58 7.73 -10.99 -0.08 7.49 16 12 O -0.52 -10.62 13.85 5.55 0.08 -10.54 16 13 N -0.64 -9.93 5.30 -9.74 -0.05 -9.98 16 14 C -0.01 -0.13 6.31 -83.57 -0.53 -0.66 16 15 C -0.11 -2.45 9.90 -39.79 -0.39 -2.85 16 16 C -0.14 -3.50 8.62 -39.25 -0.34 -3.84 16 17 C 0.10 2.71 5.55 -106.80 -0.59 2.12 16 18 C -0.46 -11.97 9.02 -37.85 -0.34 -12.31 16 19 H 0.08 1.97 7.85 -52.49 -0.41 1.56 16 20 C 0.07 1.71 5.42 -17.34 -0.09 1.62 16 21 N -0.81 -20.35 10.60 55.55 0.59 -19.76 16 22 Si 0.92 18.56 29.56 -169.99 -5.03 13.54 16 23 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 24 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 25 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 26 C -0.21 -5.16 9.74 -39.26 -0.38 -5.54 16 27 C -0.08 -1.89 8.61 -39.79 -0.34 -2.23 16 28 H 0.10 0.43 8.14 -51.92 -0.42 0.01 16 29 H 0.11 0.75 8.14 -51.92 -0.42 0.33 16 30 H 0.09 0.67 7.70 -51.93 -0.40 0.27 16 31 H 0.20 1.77 8.06 -52.49 -0.42 1.35 16 32 H 0.13 0.79 7.66 -51.93 -0.40 0.39 16 33 H 0.14 1.28 6.41 -51.93 -0.33 0.95 16 34 H 0.40 4.49 8.82 -40.82 -0.36 4.13 16 35 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 36 H 0.13 3.39 6.13 -52.49 -0.32 3.07 16 37 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 38 H 0.10 2.33 8.06 -52.48 -0.42 1.90 16 39 H 0.10 2.49 6.22 -52.49 -0.33 2.17 16 LS Contribution 348.17 15.07 5.25 5.25 Total: -1.00 -33.07 348.17 -9.59 -42.66 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -3.80 Total: 8.45 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -5.34 Total: -13.63 kcal Atomic # 7 Polarization: -40.30 SS G_CDS: 0.31 Total: -39.99 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.98 Total: -16.28 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.07 -9.59 -42.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004625874.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.830 kcal (2) G-P(sol) polarization free energy of solvation -33.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds