Wall clock time and date at job start Tue Mar 31 2020 04:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86805 * 120.00014 * 2 1 4 4 H 1.48496 * 109.47160 * 270.00499 * 3 2 1 5 5 H 1.48503 * 109.47061 * 30.00521 * 3 2 1 6 6 H 1.48500 * 109.46598 * 150.00167 * 3 2 1 7 7 C 1.37873 * 119.99749 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00172 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99865 * 179.97438 * 7 2 1 10 10 N 1.46506 * 109.46928 * 179.97438 * 9 7 2 11 11 C 1.34103 * 125.14469 * 124.99973 * 10 9 7 12 12 C 1.38068 * 107.87855 * 179.97438 * 11 10 9 13 13 C 1.47110 * 126.82151 * 179.97438 * 12 11 10 14 14 O 1.21545 * 119.99883 * 180.02562 * 13 12 11 15 15 O 1.34785 * 120.00459 * 0.02562 * 13 12 11 16 16 C 1.46653 * 106.35390 * 0.02562 * 12 11 10 17 17 C 1.48253 * 126.51865 * 180.02562 * 16 12 11 18 18 C 1.39413 * 120.07719 * 324.99938 * 17 16 12 19 19 C 1.37924 * 119.98494 * 180.02562 * 18 17 16 20 20 C 1.38851 * 120.24005 * 359.97438 * 19 18 17 21 21 C 1.39112 * 120.01369 * 359.88051 * 20 19 18 22 22 C 1.38468 * 119.94469 * 359.93753 * 21 20 19 23 23 O 1.36137 * 120.77051 * 180.36417 * 21 20 19 24 24 C 1.43169 * 116.70101 * 342.55339 * 23 21 20 25 25 C 1.53464 * 108.23243 * 46.30325 * 24 23 21 26 26 O 1.36118 * 119.26310 * 179.65233 * 20 19 18 27 27 N 1.31365 * 106.96151 * 359.72153 * 16 12 11 28 28 H 0.97001 * 119.99269 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47103 * 59.99689 * 9 7 2 30 30 H 1.09000 * 109.47247 * 299.99566 * 9 7 2 31 31 H 1.07997 * 126.06012 * 359.97438 * 11 10 9 32 32 H 0.96694 * 117.00407 * 180.02562 * 15 13 12 33 33 H 1.08001 * 120.01034 * 0.05820 * 18 17 16 34 34 H 1.07994 * 119.87958 * 180.02562 * 19 18 17 35 35 H 1.08004 * 120.01479 * 180.13648 * 22 21 20 36 36 H 1.08999 * 109.71103 * 165.99237 * 24 23 21 37 37 H 1.09002 * 109.70867 * 286.61424 * 24 23 21 38 38 H 1.08998 * 109.70659 * 59.93636 * 25 24 23 39 39 H 1.08998 * 109.70902 * 180.55402 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6527 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9998 -2.5754 -0.0010 11 6 4.8497 -3.0938 -0.8995 12 6 5.0681 -4.4150 -0.5632 13 6 5.9313 -5.3736 -1.2704 14 8 6.0331 -6.5145 -0.8637 15 8 6.6093 -4.9869 -2.3692 16 6 4.2676 -4.6730 0.6382 17 6 4.1737 -5.9548 1.3772 18 6 4.2200 -7.1648 0.6861 19 6 4.1320 -8.3561 1.3755 20 6 3.9977 -8.3560 2.7575 21 6 3.9540 -7.1517 3.4523 22 6 4.0458 -5.9533 2.7647 23 8 3.8301 -7.1338 4.8079 24 6 3.3682 -8.3389 5.4277 25 6 4.1480 -9.5167 4.8277 26 8 3.9054 -9.5432 3.4171 27 7 3.6548 -3.5507 0.9387 28 1 -0.4849 0.8401 0.0004 29 1 3.8752 -0.6804 0.8888 30 1 3.8745 -0.6801 -0.8912 31 1 5.2860 -2.5706 -1.7375 32 1 7.1634 -5.6520 -2.7999 33 1 4.3253 -7.1693 -0.3887 34 1 4.1684 -9.2924 0.8385 35 1 4.0143 -5.0176 3.3033 36 1 3.5444 -8.2905 6.5023 37 1 2.3031 -8.4666 5.2347 38 1 5.2137 -9.3854 5.0150 39 1 3.8076 -10.4497 5.2768 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005000363.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:36 Heat of formation + Delta-G solvation = -53.221727 kcal Electronic energy + Delta-G solvation = -27273.838200 eV Core-core repulsion = 23149.292372 eV Total energy + Delta-G solvation = -4124.545828 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.21326 -40.74399 -39.32988 -37.63125 -37.21856 -35.74099 -33.89031 -32.36294 -31.05602 -30.74714 -29.96962 -28.77486 -27.44383 -24.90128 -23.77959 -23.31016 -22.23877 -21.07741 -20.41614 -19.41083 -18.52657 -17.59073 -17.30352 -17.20100 -17.06548 -16.76001 -15.60472 -15.41066 -15.14213 -15.05013 -14.63205 -14.55455 -14.39810 -14.05103 -13.76986 -13.70814 -13.35916 -13.09915 -12.81293 -12.54277 -12.29349 -11.94058 -11.86541 -11.45519 -11.23700 -11.15560 -11.00843 -10.90977 -10.52775 -10.36105 -10.33914 -10.05453 -9.76776 -9.17170 -8.87180 -8.46260 -8.24192 -7.68290 -6.33563 -4.38396 1.12895 1.53877 1.75195 2.57197 2.87149 3.04673 3.08305 3.13819 3.18413 3.19661 3.45351 3.48116 3.98270 4.13145 4.13637 4.64026 4.66378 4.70762 4.75759 4.84989 4.97611 5.09670 5.29909 5.37681 5.42216 5.52722 5.60572 5.73725 5.93090 5.99169 6.15151 6.22626 6.29936 6.42275 6.57327 6.71882 6.80058 6.86575 6.94406 7.13824 7.32833 7.46525 8.05179 8.20223 8.24505 8.74503 9.19129 10.78687 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.012057 B = 0.003472 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.721460 B = 8062.328682 C = 9895.634959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.080 3.920 3 Si 0.872 3.128 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.542 4.542 8 H 0.088 0.912 9 C 0.222 3.778 10 N -0.309 5.309 11 C 0.130 3.870 12 C -0.304 4.304 13 C 0.563 3.437 14 O -0.525 6.525 15 O -0.520 6.520 16 C 0.151 3.849 17 C -0.010 4.010 18 C -0.053 4.053 19 C -0.123 4.123 20 C 0.056 3.944 21 C 0.036 3.964 22 C -0.079 4.079 23 O -0.307 6.307 24 C 0.021 3.979 25 C 0.021 3.979 26 O -0.309 6.309 27 N -0.250 5.250 28 H 0.270 0.730 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.188 0.812 32 H 0.407 0.593 33 H 0.151 0.849 34 H 0.135 0.865 35 H 0.139 0.861 36 H 0.119 0.881 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.846 -14.595 3.470 19.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.125 4.125 3 Si 0.698 3.302 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.580 4.580 8 H 0.106 0.894 9 C 0.104 3.896 10 N -0.084 5.084 11 C -0.024 4.024 12 C -0.317 4.317 13 C 0.410 3.590 14 O -0.416 6.416 15 O -0.331 6.331 16 C -0.017 4.017 17 C -0.012 4.012 18 C -0.072 4.072 19 C -0.141 4.141 20 C 0.011 3.989 21 C -0.008 4.008 22 C -0.099 4.099 23 O -0.222 6.222 24 C -0.055 4.055 25 C -0.055 4.055 26 O -0.224 6.224 27 N -0.069 5.069 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.205 0.795 32 H 0.265 0.735 33 H 0.168 0.832 34 H 0.152 0.848 35 H 0.157 0.843 36 H 0.137 0.863 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 10.550 -13.680 4.651 17.891 hybrid contribution 1.167 0.172 -0.668 1.355 sum 11.717 -13.508 3.983 18.320 Atomic orbital electron populations 1.69867 1.06168 1.27513 1.48241 1.24810 0.94877 0.98786 0.94014 0.86921 0.80435 0.83831 0.79007 1.19577 1.20362 1.18835 1.21017 0.87265 0.95992 1.53731 0.89396 1.20308 0.98094 0.72213 0.98967 1.48885 1.30195 1.11670 1.17621 1.23140 0.91449 0.93434 0.94383 1.19993 1.13658 0.94016 1.04073 1.19681 0.76605 0.85708 0.77013 1.90832 1.63585 1.20755 1.66454 1.84592 1.58960 1.47993 1.41563 1.21569 0.94710 0.92543 0.92846 1.17314 1.03446 0.89570 0.90911 1.21310 0.94874 0.89534 1.01483 1.20280 1.04506 0.99178 0.90181 1.19014 1.03690 0.83631 0.92594 1.18592 1.06184 0.93067 0.82954 1.20432 1.00532 0.96301 0.92590 1.86322 1.82998 1.36064 1.16813 1.23580 0.98958 0.84104 0.98852 1.23588 1.00894 1.00722 0.80289 1.86285 1.86753 1.28258 1.21067 1.77594 1.20411 0.96021 1.12898 0.91966 0.93191 0.92811 0.79540 0.73529 0.83212 0.84759 0.84289 0.86331 0.90566 0.90645 0.86365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.61 13.96 55.43 0.77 -24.83 16 2 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 3 Si 0.87 19.15 27.47 -169.99 -4.67 14.48 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 6 H -0.26 -5.43 6.54 56.52 0.37 -5.06 16 7 C -0.54 -14.52 9.77 -34.44 -0.34 -14.86 16 8 H 0.09 2.69 8.06 -52.48 -0.42 2.27 16 9 C 0.22 4.83 5.27 -5.19 -0.03 4.81 16 10 N -0.31 -6.36 3.62 -62.02 -0.22 -6.58 16 11 C 0.13 2.20 11.23 -16.62 -0.19 2.01 16 12 C -0.30 -5.25 6.26 -102.97 -0.64 -5.90 16 13 C 0.56 8.44 8.19 34.33 0.28 8.72 16 14 O -0.52 -8.52 13.22 -19.30 -0.26 -8.77 16 15 O -0.52 -5.83 13.27 -40.72 -0.54 -6.38 16 16 C 0.15 2.93 6.94 -80.55 -0.56 2.37 16 17 C -0.01 -0.18 5.73 -104.93 -0.60 -0.78 16 18 C -0.05 -0.86 7.77 -39.26 -0.31 -1.16 16 19 C -0.12 -1.81 9.94 -39.47 -0.39 -2.21 16 20 C 0.06 0.84 6.50 -39.03 -0.25 0.58 16 21 C 0.04 0.58 6.49 -39.17 -0.25 0.32 16 22 C -0.08 -1.36 9.67 -39.08 -0.38 -1.74 16 23 O -0.31 -4.38 10.42 -32.95 -0.34 -4.73 16 24 C 0.02 0.20 7.26 37.40 0.27 0.47 16 25 C 0.02 0.19 7.26 37.40 0.27 0.46 16 26 O -0.31 -4.03 10.41 -32.89 -0.34 -4.37 16 27 N -0.25 -5.45 12.28 34.58 0.42 -5.02 16 28 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.05 1.08 7.20 -51.93 -0.37 0.71 16 30 H 0.05 1.03 7.47 -51.93 -0.39 0.64 16 31 H 0.19 2.37 8.06 -52.49 -0.42 1.95 16 32 H 0.41 2.57 9.11 45.56 0.42 2.98 16 33 H 0.15 2.42 5.62 -52.49 -0.30 2.12 16 34 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 35 H 0.14 2.42 8.06 -52.48 -0.42 2.00 16 36 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 341.65 15.07 5.15 5.15 Total: -1.00 -33.71 341.65 -6.43 -40.14 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -3.19 Total: 5.75 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -3.21 Total: -4.84 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.97 Total: -36.44 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -1.48 Total: -24.24 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.67 Total: 14.48 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.71 -6.43 -40.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005000363.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.082 kcal (2) G-P(sol) polarization free energy of solvation -33.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds