Wall clock time and date at job start Tue Mar 31 2020 05:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46506 * 109.46860 * 153.84546 * 3 2 1 5 5 C 1.34771 * 119.99808 * 180.02562 * 4 3 2 6 6 O 1.21282 * 119.99951 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.00263 * 179.97438 * 5 4 3 8 8 O 1.45195 * 109.47593 * 179.97438 * 7 5 4 9 9 C 1.34752 * 117.00253 * 179.97438 * 8 7 5 10 10 O 1.21510 * 119.99813 * 0.02562 * 9 8 7 11 11 C 1.47460 * 119.99938 * 180.02562 * 9 8 7 12 12 C 1.39839 * 120.06259 * 180.02562 * 11 9 8 13 13 C 1.37614 * 119.92694 * 180.29959 * 12 11 9 14 14 C 1.39272 * 120.06806 * 359.44512 * 13 12 11 15 15 N 1.39071 * 119.93249 * 180.25894 * 14 13 12 16 16 C 1.34771 * 119.99977 * 213.94198 * 15 14 13 17 17 O 1.21726 * 120.00405 * 5.27935 * 16 15 14 18 18 C 1.46202 * 120.00170 * 185.27935 * 16 15 14 19 19 H 1.07998 * 119.99946 * 359.97438 * 18 16 15 20 20 C 1.40121 * 120.00108 * 179.97438 * 18 16 15 21 21 N 1.30640 * 120.00103 * 359.97438 * 20 18 16 22 22 Si 1.86803 * 120.00046 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46905 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47321 * 119.99761 * 22 20 18 25 25 H 1.48494 * 109.47303 * 240.00054 * 22 20 18 26 26 C 1.39269 * 120.13235 * 0.55252 * 14 13 12 27 27 C 1.37607 * 120.07078 * 359.73074 * 26 14 13 28 28 H 4.40643 * 5.51424 * 180.02562 * 4 1 2 29 29 H 1.08997 * 109.46873 * 33.84915 * 3 2 1 30 30 H 1.08997 * 109.47204 * 273.84112 * 3 2 1 31 31 H 0.96996 * 119.99843 * 359.97438 * 4 3 2 32 32 H 1.09004 * 109.47062 * 59.99533 * 7 5 4 33 33 H 1.09002 * 109.46888 * 299.99848 * 7 5 4 34 34 H 1.07993 * 120.04073 * 0.02610 * 12 11 9 35 35 H 1.08001 * 119.96523 * 179.70162 * 13 12 11 36 36 H 0.97001 * 119.99876 * 33.94416 * 15 14 13 37 37 H 0.96998 * 119.99977 * 180.02562 * 21 20 18 38 38 H 1.08003 * 119.96184 * 179.69770 * 26 14 13 39 39 H 1.08004 * 120.03417 * 179.97438 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2407 -0.6089 5 6 4.4586 1.4622 -0.7179 6 8 5.2471 0.6351 -0.3116 7 6 4.9604 2.7374 -1.3447 8 8 6.4124 2.7382 -1.3446 9 6 7.0237 3.8158 -1.8748 10 8 6.3614 4.7299 -2.3244 11 6 8.4962 3.8854 -1.9092 12 6 9.1319 5.0033 -2.4586 13 6 10.5063 5.0627 -2.4950 14 6 11.2640 4.0162 -1.9749 15 7 12.6527 4.0815 -2.0082 16 6 13.3764 2.9572 -2.1773 17 8 12.8154 1.8995 -2.3967 18 6 14.8353 3.0079 -2.0971 19 1 15.3332 3.9464 -1.9028 20 6 15.5877 1.8389 -2.2723 21 7 14.9855 0.7035 -2.5068 22 14 17.4518 1.9038 -2.1706 23 1 17.8844 3.2980 -1.8980 24 1 17.9190 1.0169 -1.0749 25 1 18.0340 1.4482 -3.4584 26 6 10.6336 2.9016 -1.4271 27 6 9.2597 2.8338 -1.3931 28 1 -1.0502 -0.0003 0.0003 29 1 3.0096 -0.8527 -0.5724 30 1 3.0093 -0.0680 1.0253 31 1 2.5031 1.9020 -0.9342 32 1 4.5970 3.5911 -0.7725 33 1 4.5968 2.8059 -2.3700 34 1 8.5450 5.8171 -2.8579 35 1 10.9979 5.9235 -2.9235 36 1 13.1005 4.9363 -1.9097 37 1 15.5063 -0.1058 -2.6278 38 1 11.2239 2.0895 -1.0289 39 1 8.7715 1.9690 -0.9685 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007323069.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:00 Heat of formation + Delta-G solvation = -70.748291 kcal Electronic energy + Delta-G solvation = -25608.896434 eV Core-core repulsion = 21483.590598 eV Total energy + Delta-G solvation = -4125.305837 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.67568 -39.80425 -39.07434 -37.04311 -36.31672 -35.78196 -33.66079 -33.12434 -32.57964 -30.62751 -30.14757 -29.18074 -26.89542 -26.34362 -23.56683 -22.31585 -21.24318 -20.96725 -19.80101 -19.29647 -18.06129 -17.74238 -17.25982 -16.84512 -16.74520 -16.31766 -15.98937 -15.61786 -15.57621 -14.56226 -14.40305 -14.22745 -14.03214 -13.90871 -13.72580 -13.22483 -13.01118 -12.98031 -12.68402 -12.63036 -12.03754 -11.90859 -11.35222 -11.34575 -11.17760 -11.01729 -10.88998 -10.81753 -10.68467 -10.47791 -10.37147 -10.15583 -9.58417 -9.50293 -9.00097 -8.61599 -7.88705 -7.31505 -6.43929 -4.92014 1.10738 1.70796 1.87400 2.16609 2.26620 2.45880 2.79029 3.02309 3.10515 3.14846 3.26991 3.72522 3.91557 4.12920 4.26070 4.42236 4.46566 4.74577 4.77752 4.99003 5.04483 5.08713 5.25901 5.32615 5.36494 5.52551 5.77435 5.79823 5.90727 6.08228 6.20224 6.45322 6.66583 6.79498 6.89820 6.92130 6.97495 7.17020 7.22302 7.59018 7.72802 7.85487 7.88002 8.03352 8.75789 9.04784 10.25374 10.46175 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.020678 B = 0.001946 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.760672 B =14384.218749 C =15620.452398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.211 4.211 3 C 0.232 3.768 4 N -0.729 5.729 5 C 0.517 3.483 6 O -0.506 6.506 7 C 0.051 3.949 8 O -0.329 6.329 9 C 0.522 3.478 10 O -0.524 6.524 11 C -0.189 4.189 12 C -0.025 4.025 13 C -0.195 4.195 14 C 0.238 3.762 15 N -0.694 5.694 16 C 0.537 3.463 17 O -0.554 6.554 18 C -0.535 4.535 19 H 0.074 0.926 20 C 0.085 3.915 21 N -0.755 5.755 22 Si 0.915 3.085 23 H -0.262 1.262 24 H -0.274 1.274 25 H -0.274 1.274 26 C -0.149 4.149 27 C -0.034 4.034 28 H 0.223 0.777 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.406 0.594 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.397 0.603 37 H 0.273 0.727 38 H 0.147 0.853 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.185 4.267 3.733 22.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.211 4.211 3 C 0.111 3.889 4 N -0.385 5.385 5 C 0.302 3.698 6 O -0.379 6.379 7 C -0.027 4.027 8 O -0.245 6.245 9 C 0.370 3.630 10 O -0.415 6.415 11 C -0.192 4.192 12 C -0.044 4.044 13 C -0.217 4.217 14 C 0.136 3.864 15 N -0.335 5.335 16 C 0.344 3.656 17 O -0.435 6.435 18 C -0.571 4.571 19 H 0.092 0.908 20 C -0.136 4.136 21 N -0.383 5.383 22 Si 0.739 3.261 23 H -0.186 1.186 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.170 4.170 27 C -0.053 4.053 28 H 0.239 0.761 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.240 0.760 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.231 0.769 37 H 0.084 0.916 38 H 0.165 0.835 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -22.004 2.879 3.723 22.502 hybrid contribution 0.369 0.820 -0.198 0.921 sum -21.635 3.700 3.525 22.231 Atomic orbital electron populations 1.25064 0.95972 0.97601 0.99914 1.22875 0.94201 1.02637 1.01407 1.18079 0.83128 0.87583 1.00155 1.45777 1.06753 1.21994 1.63955 1.20135 0.82080 0.88087 0.79454 1.90811 1.54753 1.45881 1.46475 1.22522 0.80332 0.96658 1.03151 1.86655 1.19716 1.43424 1.74709 1.21350 0.89436 0.78723 0.73503 1.90790 1.66813 1.38298 1.45584 1.18698 0.87498 0.99438 1.13565 1.20808 0.93754 0.95586 0.94285 1.20821 0.93254 1.01291 1.06294 1.18319 0.85330 0.93631 0.89104 1.44321 1.02554 1.12829 1.73785 1.18488 0.88205 0.81272 0.77595 1.90664 1.72102 1.28650 1.52078 1.20908 0.89024 0.95829 1.51307 0.90751 1.25764 1.00649 0.94675 0.92556 1.69983 1.37003 0.99240 1.32087 0.86194 0.82098 0.79347 0.78505 1.18580 1.19904 1.19944 1.21350 0.93888 0.99931 1.01800 1.21318 0.93508 0.96406 0.94073 0.76067 0.88639 0.88659 0.75986 0.88014 0.87989 0.85180 0.85422 0.76885 0.91578 0.83525 0.84781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.86 19.25 29.55 0.57 -0.29 16 2 C -0.21 -1.37 13.46 -37.12 -0.50 -1.87 16 3 C 0.23 1.65 6.15 -6.82 -0.04 1.61 16 4 N -0.73 -5.22 5.54 -63.16 -0.35 -5.57 16 5 C 0.52 5.54 7.91 -10.99 -0.09 5.45 16 6 O -0.51 -7.73 16.50 -14.10 -0.23 -7.97 16 7 C 0.05 0.52 5.95 36.01 0.21 0.74 16 8 O -0.33 -4.85 8.99 -47.31 -0.43 -5.27 16 9 C 0.52 8.26 7.89 34.49 0.27 8.53 16 10 O -0.52 -8.59 16.13 -19.27 -0.31 -8.90 16 11 C -0.19 -3.19 5.88 -104.95 -0.62 -3.80 16 12 C -0.03 -0.40 9.58 -39.21 -0.38 -0.78 16 13 C -0.20 -3.21 9.94 -39.42 -0.39 -3.60 16 14 C 0.24 4.73 6.27 -83.81 -0.53 4.21 16 15 N -0.69 -14.68 5.30 -11.19 -0.06 -14.74 16 16 C 0.54 14.27 7.46 -13.07 -0.10 14.17 16 17 O -0.55 -16.68 12.69 5.17 0.07 -16.62 16 18 C -0.54 -14.05 9.54 -35.68 -0.34 -14.39 16 19 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 20 C 0.09 2.23 5.50 -17.35 -0.10 2.14 16 21 N -0.76 -21.37 11.82 55.55 0.66 -20.72 16 22 Si 0.91 18.95 29.56 -169.99 -5.02 13.92 16 23 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 24 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 25 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 26 C -0.15 -3.07 8.62 -39.43 -0.34 -3.41 16 27 C -0.03 -0.61 9.60 -39.22 -0.38 -0.99 16 28 H 0.22 0.38 7.80 -54.08 -0.42 -0.04 16 29 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.41 1.81 8.45 -40.82 -0.34 1.46 16 32 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.13 1.82 7.64 -52.49 -0.40 1.41 16 35 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 36 H 0.40 7.02 8.79 -40.82 -0.36 6.67 16 37 H 0.27 6.99 8.29 -40.82 -0.34 6.65 16 38 H 0.15 3.43 6.41 -52.48 -0.34 3.10 16 39 H 0.13 2.28 7.60 -52.48 -0.40 1.88 16 LS Contribution 364.32 15.07 5.49 5.49 Total: -1.00 -35.83 364.32 -6.84 -42.67 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -3.92 Total: 9.98 kcal Atomic # 6 Polarization: 10.45 SS G_CDS: -2.73 Total: 7.72 kcal Atomic # 7 Polarization: -41.27 SS G_CDS: 0.25 Total: -41.03 kcal Atomic # 8 Polarization: -37.85 SS G_CDS: -0.90 Total: -38.75 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.02 Total: 13.92 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.83 -6.84 -42.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007323069.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.078 kcal (2) G-P(sol) polarization free energy of solvation -35.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds